Wall clock time and date at job start Tue Mar 31 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37958 * 120.07354 * 2 1 4 4 C 1.38368 * 120.14265 * 180.25198 * 3 2 1 5 5 C 1.50703 * 119.85424 * 179.77083 * 4 3 2 6 6 O 1.42909 * 109.46886 * 270.02326 * 5 4 3 7 7 C 1.38404 * 120.29014 * 359.79260 * 4 3 2 8 8 C 1.37919 * 120.14264 * 359.97438 * 7 4 3 9 9 C 1.39571 * 120.07365 * 179.79540 * 2 1 3 10 10 C 1.48005 * 120.13959 * 359.97438 * 9 2 1 11 11 C 1.40014 * 119.86242 * 129.73026 * 10 9 2 12 12 C 1.36195 * 120.18895 * 179.97438 * 11 10 9 13 13 C 1.40939 * 119.89690 * 0.02635 * 12 11 10 14 14 C 1.40958 * 120.13244 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99475 * 154.30595 * 14 13 12 16 16 C 1.40004 * 120.00219 * 334.30521 * 14 13 12 17 17 N 1.30819 * 119.99552 * 343.27787 * 16 14 13 18 18 Si 1.86792 * 120.00263 * 163.28295 * 16 14 13 19 19 H 1.48506 * 109.47107 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47174 * 119.99481 * 18 16 14 21 21 H 1.48496 * 109.47390 * 239.99976 * 18 16 14 22 22 C 1.41165 * 119.73234 * 359.97438 * 13 12 11 23 23 F 1.35097 * 120.09728 * 179.97438 * 22 13 12 24 24 C 1.36580 * 119.80836 * 359.97438 * 22 13 12 25 25 H 1.08991 * 109.46843 * 270.20847 * 1 2 3 26 26 H 1.09005 * 109.46943 * 30.20876 * 1 2 3 27 27 H 1.09006 * 109.46989 * 150.20403 * 1 2 3 28 28 H 1.08000 * 119.92820 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.47009 * 30.01862 * 5 4 3 30 30 H 1.08995 * 109.47211 * 150.02504 * 5 4 3 31 31 H 0.96702 * 113.99345 * 180.02562 * 6 5 4 32 32 H 1.08000 * 119.92553 * 179.97438 * 7 4 3 33 33 H 1.08001 * 120.07061 * 179.97438 * 8 7 4 34 34 H 1.08009 * 119.90613 * 359.71424 * 11 10 9 35 35 H 1.07996 * 120.04931 * 179.97438 * 12 11 10 36 36 H 0.97000 * 119.99628 * 179.97438 * 17 16 14 37 37 H 1.07997 * 119.94946 * 179.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1939 0.0000 4 6 3.5820 1.1955 -0.0053 5 6 4.3306 2.5035 -0.0105 6 8 4.5616 2.9147 -1.3595 7 6 4.2815 0.0013 -0.0062 8 6 3.6025 -1.1991 -0.0014 9 6 2.2064 -1.2078 0.0043 10 6 1.4712 -2.4923 0.0095 11 6 1.7981 -3.4864 -0.9207 12 6 1.1261 -4.6711 -0.9216 13 6 0.0985 -4.8966 0.0162 14 6 -0.6005 -6.1206 0.0194 15 1 -1.0655 -6.4745 0.9278 16 6 -0.6920 -6.8776 -1.1548 17 7 -0.4291 -6.3253 -2.3111 18 14 -1.1898 -8.6760 -1.0703 19 1 -1.4308 -9.0570 0.3447 20 1 -2.4317 -8.8834 -1.8576 21 1 -0.1021 -9.5175 -1.6305 22 6 -0.2279 -3.8916 0.9523 23 9 -1.2120 -4.0997 1.8542 24 6 0.4541 -2.7083 0.9436 25 1 -0.3633 0.0037 1.0276 26 1 -0.3633 0.8882 -0.5171 27 1 -0.3633 -0.8919 -0.5107 28 1 1.6584 2.1292 0.0004 29 1 3.7408 3.2617 0.5045 30 1 5.2856 2.3776 0.4996 31 1 5.0405 3.7511 -1.4391 32 1 5.3615 0.0095 -0.0108 33 1 4.1495 -2.1303 -0.0026 34 1 2.5825 -3.3117 -1.6423 35 1 1.3799 -5.4362 -1.6403 36 1 -0.4921 -6.8498 -3.1246 37 1 0.2059 -1.9377 1.6584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244580708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:51 Heat of formation + Delta-G solvation = -85.002845 kcal Electronic energy + Delta-G solvation = -21370.040970 eV Core-core repulsion = 17989.787573 eV Total energy + Delta-G solvation = -3380.253398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.24594 -40.73732 -39.07817 -37.51393 -35.84189 -33.91421 -32.95028 -31.11802 -30.97252 -28.10483 -27.78744 -25.76777 -23.34469 -23.16334 -22.20761 -21.04585 -19.41505 -18.30306 -18.13354 -17.28933 -16.83161 -16.48257 -16.33837 -15.98994 -15.96370 -15.60475 -14.84360 -14.75717 -14.53542 -14.30865 -13.96041 -13.92249 -13.74658 -13.30932 -13.13009 -13.03431 -12.92258 -12.74183 -12.48459 -12.22043 -11.95190 -11.85363 -11.70178 -11.36792 -11.14092 -10.90728 -9.91007 -9.58349 -9.42079 -9.03034 -8.75348 -6.44654 0.14407 0.54184 0.84482 0.95662 1.35999 1.45978 1.51862 2.15788 2.53657 2.82460 3.47302 3.65376 3.86831 3.94409 4.05769 4.15600 4.20326 4.29013 4.43335 4.45463 4.50993 4.61524 4.68651 4.80733 4.85849 4.95072 5.00422 5.07880 5.15609 5.19667 5.33703 5.49461 5.55524 5.65095 5.68773 5.81822 5.96170 6.06397 6.11523 6.17559 6.49113 6.68552 6.81943 6.98725 8.17542 Molecular weight = 286.11amu Principal moments of inertia in cm(-1) A = 0.031182 B = 0.003716 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.729924 B = 7532.443695 C = 7981.908236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.102 4.102 4 C -0.116 4.116 5 C 0.123 3.877 6 O -0.591 6.591 7 C -0.106 4.106 8 C -0.129 4.129 9 C -0.020 4.020 10 C -0.159 4.159 11 C -0.085 4.085 12 C -0.165 4.165 13 C 0.064 3.936 14 C -0.484 4.484 15 H 0.073 0.927 16 C 0.039 3.961 17 N -0.808 5.808 18 Si 0.987 3.013 19 H -0.261 1.261 20 H -0.262 1.262 21 H -0.256 1.256 22 C -0.060 4.060 23 F -0.170 7.170 24 C -0.091 4.091 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.139 0.861 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.296 0.704 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.048 12.695 1.803 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.101 4.101 3 C -0.120 4.120 4 C -0.116 4.116 5 C 0.047 3.953 6 O -0.400 6.400 7 C -0.124 4.124 8 C -0.147 4.147 9 C -0.020 4.020 10 C -0.160 4.160 11 C -0.104 4.104 12 C -0.185 4.185 13 C 0.061 3.939 14 C -0.512 4.512 15 H 0.092 0.908 16 C -0.179 4.179 17 N -0.433 5.433 18 Si 0.807 3.193 19 H -0.185 1.185 20 H -0.186 1.186 21 H -0.180 1.180 22 C -0.080 4.080 23 F -0.150 7.150 24 C -0.110 4.110 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.157 0.843 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.249 0.751 32 H 0.159 0.841 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.690 12.106 1.451 14.415 hybrid contribution -0.378 -0.607 0.223 0.749 sum 7.311 11.499 1.674 13.729 Atomic orbital electron populations 1.20815 0.90991 1.02496 1.02320 1.20178 0.96524 0.92423 1.00956 1.21018 0.93828 0.97332 0.99787 1.19972 0.93695 0.95375 1.02590 1.20982 0.98727 0.92028 0.83609 1.86547 1.80771 1.45760 1.26945 1.21143 1.00512 0.91315 0.99386 1.21376 0.93037 0.98788 1.01524 1.18838 0.93229 0.91565 0.98401 1.18043 1.01784 0.95148 1.01051 1.20740 0.98991 0.93059 0.97575 1.20802 0.97213 0.98209 1.02256 1.18017 0.92271 0.92275 0.91311 1.19766 1.30236 1.03844 0.97366 0.90848 1.26805 0.92531 1.04949 0.93580 1.69826 1.34420 1.39341 0.99664 0.85077 0.79115 0.75350 0.79755 1.18513 1.18639 1.18029 1.17733 0.95095 0.97283 0.97928 1.91242 1.61329 1.95798 1.66583 1.20453 0.96089 0.94948 0.99462 0.90930 0.90174 0.93253 0.84293 0.91142 0.91022 0.75126 0.84088 0.85854 0.86789 0.86666 0.89334 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.45 8.45 71.24 0.60 -2.84 16 2 C -0.10 -3.34 5.87 -19.61 -0.12 -3.45 16 3 C -0.10 -2.82 9.34 22.23 0.21 -2.62 16 4 C -0.12 -3.00 5.52 -19.79 -0.11 -3.11 16 5 C 0.12 2.19 7.16 71.24 0.51 2.70 16 6 O -0.59 -11.33 13.64 -148.98 -2.03 -13.36 16 7 C -0.11 -2.88 9.68 22.23 0.22 -2.67 16 8 C -0.13 -4.22 9.51 22.52 0.21 -4.01 16 9 C -0.02 -0.75 5.46 -20.04 -0.11 -0.86 16 10 C -0.16 -6.91 4.74 -19.88 -0.09 -7.00 16 11 C -0.09 -3.91 9.43 22.22 0.21 -3.70 16 12 C -0.17 -8.53 8.62 22.46 0.19 -8.34 16 13 C 0.06 3.54 5.57 -21.23 -0.12 3.42 16 14 C -0.48 -26.53 8.75 23.36 0.20 -26.32 16 15 H 0.07 4.03 7.74 -2.91 -0.02 4.01 16 16 C 0.04 1.92 5.15 85.27 0.44 2.36 16 17 N -0.81 -40.90 10.95 21.84 0.24 -40.66 16 18 Si 0.99 37.50 29.59 68.60 2.03 39.53 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 21 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 22 C -0.06 -3.15 7.26 22.60 0.16 -2.99 16 23 F -0.17 -8.88 16.71 44.97 0.75 -8.13 16 24 C -0.09 -4.15 7.81 22.25 0.17 -3.97 16 25 H 0.07 2.13 7.50 -2.39 -0.02 2.11 16 26 H 0.08 2.07 8.09 -2.38 -0.02 2.05 16 27 H 0.05 1.84 6.47 -2.38 -0.02 1.82 16 28 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 29 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 31 H 0.40 3.20 9.12 -74.06 -0.68 2.53 16 32 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.12 3.87 8.04 -2.91 -0.02 3.85 16 34 H 0.11 4.70 8.04 -2.91 -0.02 4.68 16 35 H 0.12 6.09 6.19 -2.91 -0.02 6.07 16 36 H 0.30 13.27 8.30 -92.71 -0.77 12.50 16 37 H 0.12 4.94 6.86 -2.91 -0.02 4.92 16 Total: -1.00 -63.91 319.16 4.01 -59.90 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.43 Total: 26.13 kcal Atomic # 6 Polarization: -66.00 SS G_CDS: 2.59 Total: -63.41 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.24 Total: -40.66 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -2.03 Total: -13.36 kcal Atomic # 9 Polarization: -8.88 SS G_CDS: 0.75 Total: -8.13 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -63.91 4.01 -59.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244580708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.103 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds