Wall clock time and date at job start Tue Mar 31 2020 05:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47297 * 2 1 4 4 C 1.50707 * 109.46759 * 119.99417 * 2 1 3 5 5 H 1.08006 * 119.99525 * 120.00048 * 4 2 1 6 6 C 1.37868 * 120.00039 * 300.00111 * 4 2 1 7 7 N 1.31515 * 120.00390 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99763 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47324 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46845 * 120.00119 * 8 6 4 11 11 H 1.48499 * 109.47301 * 240.00029 * 8 6 4 12 12 N 1.46498 * 109.47369 * 239.99306 * 2 1 3 13 13 C 1.34777 * 119.99729 * 85.00462 * 12 2 1 14 14 O 1.21556 * 119.99891 * 359.97438 * 13 12 2 15 15 C 1.47863 * 120.00018 * 179.97438 * 13 12 2 16 16 C 1.39609 * 120.11158 * 359.97438 * 15 13 12 17 17 C 1.37983 * 119.98463 * 179.97438 * 16 15 13 18 18 C 1.38269 * 120.21068 * 359.97438 * 17 16 15 19 19 C 1.38899 * 120.22999 * 0.02738 * 18 17 16 20 20 N 1.40275 * 119.99291 * 179.97438 * 19 18 17 21 21 C 1.36121 * 125.93949 * 4.71583 * 20 19 18 22 22 C 1.35367 * 106.04790 * 179.84587 * 21 20 19 23 23 N 1.33781 * 106.53644 * 0.40825 * 22 21 20 24 24 N 1.28600 * 109.06263 * 359.73592 * 23 22 21 25 25 C 1.38580 * 120.01585 * 0.23010 * 19 18 17 26 26 H 1.08997 * 109.47560 * 300.00381 * 1 2 3 27 27 H 1.09008 * 109.46878 * 60.00694 * 1 2 3 28 28 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 29 29 H 0.96994 * 119.99966 * 179.97438 * 7 6 4 30 30 H 0.97001 * 120.00678 * 264.99591 * 12 2 1 31 31 H 1.08005 * 120.01016 * 359.97157 * 16 15 13 32 32 H 1.07993 * 119.89314 * 179.97438 * 17 16 15 33 33 H 1.08004 * 119.87656 * 180.02562 * 18 17 16 34 34 H 1.07997 * 126.97315 * 0.02562 * 21 20 19 35 35 H 1.08001 * 126.73169 * 180.14493 * 22 21 20 36 36 H 1.07999 * 120.10758 * 179.74822 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4827 7 7 0.9426 0.8298 2.6034 8 14 2.3211 -1.1201 4.0080 9 1 3.1462 -2.2868 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1658 -1.5864 4.8162 12 7 2.0184 -0.6907 -1.1960 13 6 2.1472 -0.0184 -2.3570 14 8 1.8577 1.1609 -2.4118 15 6 2.6406 -0.7154 -3.5641 16 6 2.9743 -2.0697 -3.5037 17 6 3.4341 -2.7176 -4.6319 18 6 3.5654 -2.0300 -5.8243 19 6 3.2360 -0.6824 -5.8943 20 7 3.3716 0.0105 -7.1064 21 6 3.7258 -0.5340 -8.3027 22 6 3.7298 0.4866 -9.1919 23 7 3.3935 1.5873 -8.5097 24 7 3.1882 1.2728 -7.2798 25 6 2.7784 -0.0210 -4.7658 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7080 1.1610 3.4843 30 1 2.2492 -1.6319 -1.1525 31 1 2.8727 -2.6101 -2.5742 32 1 3.6921 -3.7651 -4.5834 33 1 3.9253 -2.5426 -6.7041 34 1 3.9542 -1.5705 -8.5024 35 1 3.9632 0.4253 -10.2446 36 1 2.5257 1.0277 -4.8176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179389029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:21 Heat of formation + Delta-G solvation = 97.072878 kcal Electronic energy + Delta-G solvation = -21205.360365 eV Core-core repulsion = 17885.215076 eV Total energy + Delta-G solvation = -3320.145289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.63495 -40.06673 -38.31000 -34.94431 -34.84107 -32.54534 -31.89550 -30.99608 -30.28992 -28.70631 -25.33264 -24.63915 -24.37273 -22.67892 -21.54675 -20.98368 -19.77587 -18.94205 -17.11240 -16.69391 -16.58827 -16.00630 -15.59905 -15.22197 -14.96952 -14.41944 -14.35483 -14.24136 -13.98848 -13.24731 -13.04373 -12.55435 -12.25076 -12.09830 -11.79967 -11.55229 -11.24404 -11.19900 -11.14402 -11.01188 -10.81251 -10.36592 -10.29860 -9.72631 -9.33107 -9.31918 -9.10482 -8.90971 -8.62248 -8.03942 -6.17882 -4.27928 0.28187 0.76078 1.68749 1.98633 2.31881 3.00915 3.20145 3.27908 3.30096 3.76844 3.90056 4.06716 4.27325 4.35422 4.47845 4.67089 4.80453 4.85834 4.90410 4.96395 5.14714 5.26501 5.36600 5.57746 5.77755 5.93901 6.01459 6.04697 6.23868 6.59217 6.76397 6.89609 7.07534 7.32850 7.46626 7.61780 7.83758 8.07994 8.22254 8.51104 8.68778 8.95006 9.39577 10.88182 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.035190 B = 0.003215 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.482701 B = 8707.956914 C = 9231.535922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.697 5.697 13 C 0.539 3.461 14 O -0.541 6.541 15 C -0.098 4.098 16 C -0.078 4.078 17 C -0.105 4.105 18 C -0.103 4.103 19 C 0.106 3.894 20 N -0.238 5.238 21 C -0.052 4.052 22 C -0.047 4.047 23 N -0.266 5.266 24 N -0.071 5.071 25 C -0.046 4.046 26 H 0.092 0.908 27 H 0.016 0.984 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.388 0.612 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.194 0.806 35 H 0.195 0.805 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.878 -10.858 -18.283 22.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.345 5.345 13 C 0.324 3.676 14 O -0.420 6.420 15 C -0.102 4.102 16 C -0.097 4.097 17 C -0.123 4.123 18 C -0.124 4.124 19 C 0.015 3.985 20 N -0.025 5.025 21 C -0.200 4.200 22 C -0.202 4.202 23 N -0.132 5.132 24 N -0.050 5.050 25 C -0.067 4.067 26 H 0.110 0.890 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.210 0.790 35 H 0.211 0.789 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.192 -8.496 -17.505 20.139 hybrid contribution 0.724 -2.078 0.319 2.224 sum 5.916 -10.574 -17.187 21.029 Atomic orbital electron populations 1.22091 0.98200 0.99250 1.01122 1.18838 0.91199 0.94125 0.79636 0.93052 1.21219 1.32650 1.13335 0.90217 0.91960 1.24890 0.94751 0.94936 0.99107 1.69907 1.35678 1.22387 1.23918 0.86377 0.78610 0.79502 0.82502 1.19723 1.20831 1.20831 1.46505 1.64207 1.13548 1.10266 1.18067 0.79444 0.86889 0.83223 1.90775 1.50978 1.15399 1.84830 1.20283 1.01084 0.94139 0.94680 1.21652 0.95217 0.93493 0.99381 1.20963 0.99504 1.00523 0.91336 1.20984 1.00401 0.91273 0.99742 1.17515 1.06168 0.91665 0.83102 1.44793 1.42963 1.07100 1.07688 1.23824 1.08835 1.02616 0.84749 1.23668 1.06165 0.88659 1.01753 1.75163 1.15018 1.25526 0.97464 1.78500 1.18940 0.93993 1.13563 1.21097 0.94535 1.01797 0.89296 0.88954 0.96520 0.95358 0.92515 0.77785 0.84115 0.83918 0.84595 0.78950 0.78854 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 2 C 0.26 6.55 2.56 -69.08 -0.18 6.37 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.46 11.32 55.43 0.63 -23.83 16 8 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.70 -13.97 5.02 -55.87 -0.28 -14.25 16 13 C 0.54 10.69 7.74 -12.32 -0.10 10.60 16 14 O -0.54 -13.01 16.01 5.32 0.09 -12.93 16 15 C -0.10 -1.46 5.87 -104.99 -0.62 -2.08 16 16 C -0.08 -0.85 9.54 -39.16 -0.37 -1.22 16 17 C -0.10 -0.84 10.03 -39.66 -0.40 -1.24 16 18 C -0.10 -0.87 9.45 -39.33 -0.37 -1.24 16 19 C 0.11 1.28 6.67 -83.62 -0.56 0.72 16 20 N -0.24 -2.96 3.56 -10.50 -0.04 -3.00 16 21 C -0.05 -0.45 10.91 -16.67 -0.18 -0.64 16 22 C -0.05 -0.45 12.05 -17.73 -0.21 -0.66 16 23 N -0.27 -3.77 12.39 30.24 0.37 -3.39 16 24 N -0.07 -1.10 12.42 60.35 0.75 -0.35 16 25 C -0.05 -0.69 9.16 -39.00 -0.36 -1.05 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 6.44 6.57 -40.82 -0.27 6.18 16 31 H 0.14 1.30 6.40 -52.48 -0.34 0.97 16 32 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 33 H 0.14 0.66 6.77 -52.48 -0.36 0.31 16 34 H 0.19 0.76 7.12 -52.49 -0.37 0.39 16 35 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.16 2.63 7.29 -52.49 -0.38 2.25 16 LS Contribution 315.08 15.07 4.75 4.75 Total: -1.00 -33.45 315.08 -5.80 -39.25 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -3.66 Total: 4.75 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.39 Total: -6.14 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 1.43 Total: -44.82 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.45 -5.80 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179389029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.328 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds