Wall clock time and date at job start Tue Mar 31 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47297 * 2 1 4 4 C 1.50707 * 109.46759 * 119.99417 * 2 1 3 5 5 H 1.08006 * 119.99525 * 120.00048 * 4 2 1 6 6 C 1.37868 * 120.00039 * 300.00111 * 4 2 1 7 7 N 1.31515 * 120.00390 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99763 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47324 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46845 * 120.00119 * 8 6 4 11 11 H 1.48499 * 109.47301 * 240.00029 * 8 6 4 12 12 N 1.46498 * 109.47369 * 239.99306 * 2 1 3 13 13 C 1.34777 * 119.99729 * 85.00462 * 12 2 1 14 14 O 1.21556 * 119.99891 * 359.97438 * 13 12 2 15 15 C 1.47863 * 120.00018 * 179.97438 * 13 12 2 16 16 C 1.39609 * 120.11158 * 359.97438 * 15 13 12 17 17 C 1.37983 * 119.98463 * 179.97438 * 16 15 13 18 18 C 1.38269 * 120.21068 * 359.97438 * 17 16 15 19 19 C 1.38899 * 120.22999 * 0.02738 * 18 17 16 20 20 N 1.40275 * 119.99291 * 179.97438 * 19 18 17 21 21 C 1.36121 * 125.93949 * 4.71583 * 20 19 18 22 22 C 1.35367 * 106.04790 * 179.84587 * 21 20 19 23 23 N 1.33781 * 106.53644 * 0.40825 * 22 21 20 24 24 N 1.28600 * 109.06263 * 359.73592 * 23 22 21 25 25 C 1.38580 * 120.01585 * 0.23010 * 19 18 17 26 26 H 1.08997 * 109.47560 * 300.00381 * 1 2 3 27 27 H 1.09008 * 109.46878 * 60.00694 * 1 2 3 28 28 H 1.09004 * 109.47022 * 179.97438 * 1 2 3 29 29 H 0.96994 * 119.99966 * 179.97438 * 7 6 4 30 30 H 0.97001 * 120.00678 * 264.99591 * 12 2 1 31 31 H 1.08005 * 120.01016 * 359.97157 * 16 15 13 32 32 H 1.07993 * 119.89314 * 179.97438 * 17 16 15 33 33 H 1.08004 * 119.87656 * 180.02562 * 18 17 16 34 34 H 1.07997 * 126.97315 * 0.02562 * 21 20 19 35 35 H 1.08001 * 126.73169 * 180.14493 * 22 21 20 36 36 H 1.07999 * 120.10758 * 179.74822 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6991 -0.2392 2.4827 7 7 0.9426 0.8298 2.6034 8 14 2.3211 -1.1201 4.0080 9 1 3.1462 -2.2868 3.6040 10 1 3.1464 -0.1870 4.8166 11 1 1.1658 -1.5864 4.8162 12 7 2.0184 -0.6907 -1.1960 13 6 2.1472 -0.0184 -2.3570 14 8 1.8577 1.1609 -2.4118 15 6 2.6406 -0.7154 -3.5641 16 6 2.9743 -2.0697 -3.5037 17 6 3.4341 -2.7176 -4.6319 18 6 3.5654 -2.0300 -5.8243 19 6 3.2360 -0.6824 -5.8943 20 7 3.3716 0.0105 -7.1064 21 6 3.7258 -0.5340 -8.3027 22 6 3.7298 0.4866 -9.1919 23 7 3.3935 1.5873 -8.5097 24 7 3.1882 1.2728 -7.2798 25 6 2.7784 -0.0210 -4.7658 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7080 1.1610 3.4843 30 1 2.2492 -1.6319 -1.1525 31 1 2.8727 -2.6101 -2.5742 32 1 3.6921 -3.7651 -4.5834 33 1 3.9253 -2.5426 -6.7041 34 1 3.9542 -1.5705 -8.5024 35 1 3.9632 0.4253 -10.2446 36 1 2.5257 1.0277 -4.8176 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179389029.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:20 Heat of formation + Delta-G solvation = 72.686674 kcal Electronic energy + Delta-G solvation = -21206.417830 eV Core-core repulsion = 17885.215076 eV Total energy + Delta-G solvation = -3321.202754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 4.04 seconds Orbital eigenvalues (eV) -44.46825 -41.28572 -39.62391 -36.81626 -35.76752 -34.38405 -32.82669 -31.95761 -31.37151 -30.29882 -27.37569 -25.64933 -25.37199 -23.75516 -22.58193 -22.30638 -21.26836 -20.15382 -18.56761 -17.58941 -17.56024 -17.43856 -17.13321 -16.36719 -16.12700 -15.97789 -15.57747 -15.23684 -14.84641 -14.77405 -14.48189 -14.09324 -13.72543 -13.07326 -13.01159 -12.96843 -12.90945 -12.76553 -12.46258 -12.30737 -12.12606 -12.10380 -12.03809 -11.13367 -10.98534 -10.63164 -10.50324 -10.26731 -9.87867 -9.73405 -8.18885 -6.37265 -0.55450 -0.20779 0.89656 1.20744 1.45495 1.46371 1.53316 1.58625 1.84402 2.27116 2.49321 2.70425 3.12228 3.36819 3.55059 3.66590 3.82544 3.97325 4.01845 4.20444 4.24478 4.30908 4.60820 4.69593 4.76193 4.87806 5.03040 5.04995 5.12098 5.17303 5.25305 5.38384 5.43363 5.55190 5.64102 5.79272 5.86076 6.05410 6.69584 6.83465 7.27716 7.37709 7.43484 8.88078 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.035190 B = 0.003215 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.482701 B = 8707.956914 C = 9231.535922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.080 0.920 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.976 3.024 9 H -0.254 1.254 10 H -0.287 1.287 11 H -0.279 1.279 12 N -0.690 5.690 13 C 0.535 3.465 14 O -0.600 6.600 15 C -0.124 4.124 16 C -0.070 4.070 17 C -0.083 4.083 18 C -0.073 4.073 19 C 0.095 3.905 20 N -0.246 5.246 21 C -0.028 4.028 22 C -0.054 4.054 23 N -0.304 5.304 24 N -0.139 5.139 25 C -0.072 4.072 26 H 0.068 0.932 27 H 0.008 0.992 28 H 0.046 0.954 29 H 0.265 0.735 30 H 0.408 0.592 31 H 0.159 0.841 32 H 0.197 0.803 33 H 0.191 0.809 34 H 0.252 0.748 35 H 0.233 0.767 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.912 -16.391 -20.081 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.166 3.834 3 H 0.014 0.986 4 C -0.583 4.583 5 H 0.098 0.902 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.801 3.199 9 H -0.178 1.178 10 H -0.213 1.213 11 H -0.205 1.205 12 N -0.339 5.339 13 C 0.323 3.677 14 O -0.483 6.483 15 C -0.128 4.128 16 C -0.090 4.090 17 C -0.100 4.100 18 C -0.093 4.093 19 C 0.004 3.996 20 N -0.034 5.034 21 C -0.176 4.176 22 C -0.211 4.211 23 N -0.169 5.169 24 N -0.117 5.117 25 C -0.093 4.093 26 H 0.087 0.913 27 H 0.027 0.973 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.245 0.755 31 H 0.177 0.823 32 H 0.215 0.785 33 H 0.208 0.792 34 H 0.268 0.732 35 H 0.249 0.751 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.236 -14.057 -19.316 24.961 hybrid contribution 0.137 -0.409 0.700 0.822 sum 7.373 -14.465 -18.616 24.701 Atomic orbital electron populations 1.21918 0.98165 0.99791 0.99519 1.18423 0.91251 0.91978 0.81780 0.98562 1.21561 1.32674 1.13698 0.90392 0.90180 1.25861 0.94824 0.95568 1.02547 1.70072 1.37012 1.24072 1.24640 0.85233 0.78069 0.78548 0.78094 1.17783 1.21280 1.20454 1.46150 1.64298 1.14304 1.09169 1.18876 0.78020 0.86365 0.84457 1.90733 1.53420 1.18241 1.85905 1.19765 1.04793 0.96032 0.92185 1.21919 0.94127 0.91242 1.01667 1.21559 0.96554 1.02488 0.89448 1.21639 0.96879 0.88981 1.01804 1.17730 1.06607 0.93092 0.82132 1.44968 1.42872 1.06679 1.08835 1.24795 1.05592 1.04699 0.82564 1.24477 1.05331 0.87664 1.03598 1.75090 1.15979 1.28037 0.97823 1.78517 1.22497 0.96167 1.14475 1.20822 0.96949 1.00381 0.91174 0.91324 0.97313 0.93502 0.92538 0.75456 0.82331 0.78550 0.79233 0.73190 0.75061 0.86989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.93 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.03 2.56 44.25 0.11 14.15 16 3 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 4 C -0.55 -28.28 8.73 25.60 0.22 -28.05 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.63 5.30 84.65 0.45 1.08 16 7 N -0.92 -52.87 11.32 21.44 0.24 -52.63 16 8 Si 0.98 41.12 29.54 68.60 2.03 43.15 16 9 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 10 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 12 N -0.69 -28.51 5.02 -448.96 -2.25 -30.77 16 13 C 0.54 22.68 7.74 86.79 0.67 23.35 16 14 O -0.60 -32.03 16.01 -3.89 -0.06 -32.09 16 15 C -0.12 -3.78 5.87 -20.10 -0.12 -3.90 16 16 C -0.07 -1.31 9.54 22.54 0.21 -1.09 16 17 C -0.08 -0.80 10.03 22.22 0.22 -0.58 16 18 C -0.07 -0.79 9.45 22.44 0.21 -0.58 16 19 C 0.10 2.12 6.67 38.03 0.25 2.37 16 20 N -0.25 -5.81 3.56 -187.15 -0.67 -6.48 16 21 C -0.03 -0.38 10.91 83.36 0.91 0.53 16 22 C -0.05 -0.91 12.05 83.73 1.01 0.10 16 23 N -0.30 -8.82 12.39 -58.24 -0.72 -9.54 16 24 N -0.14 -4.51 12.42 37.02 0.46 -4.06 16 25 C -0.07 -2.26 9.16 22.65 0.21 -2.05 16 26 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 27 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.41 13.21 6.57 -92.71 -0.61 12.60 16 31 H 0.16 2.31 6.40 -2.91 -0.02 2.29 16 32 H 0.20 0.02 8.06 -2.91 -0.02 -0.01 16 33 H 0.19 0.07 6.77 -2.91 -0.02 0.05 16 34 H 0.25 -0.01 7.12 -2.91 -0.02 -0.03 16 35 H 0.23 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.11 4.41 7.29 -2.91 -0.02 4.39 16 Total: -1.00 -84.99 315.08 4.58 -80.40 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.52 Total: 12.94 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.04 Total: -0.94 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -2.94 Total: -103.47 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.06 Total: -32.09 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -84.99 4.58 -80.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179389029.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.092 kcal (2) G-P(sol) polarization free energy of solvation -84.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds