Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99704 * 2 1 4 4 C 1.50699 * 109.47520 * 270.00149 * 3 2 1 5 5 H 1.08000 * 119.99592 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99940 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00160 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47127 * 89.99972 * 8 6 4 10 10 H 1.48498 * 109.47045 * 210.00352 * 8 6 4 11 11 H 1.48500 * 109.46951 * 330.00228 * 8 6 4 12 12 C 1.34775 * 120.00101 * 180.02562 * 2 1 3 13 13 O 1.21579 * 119.99927 * 184.51624 * 12 2 1 14 14 C 1.47629 * 119.99768 * 4.51330 * 12 2 1 15 15 C 1.39623 * 120.18768 * 304.43463 * 14 12 2 16 16 C 1.37862 * 119.90934 * 179.97438 * 15 14 12 17 17 C 1.38499 * 120.30834 * 0.02562 * 16 15 14 18 18 C 1.38102 * 120.38146 * 359.71978 * 17 16 15 19 19 C 1.38721 * 120.07699 * 0.56022 * 18 17 16 20 20 N 1.39804 * 120.15519 * 179.72355 * 19 18 17 21 21 C 1.36328 * 126.86701 * 353.54310 * 20 19 18 22 22 C 1.34962 * 106.78085 * 180.22366 * 21 20 19 23 23 N 1.33377 * 109.01214 * 359.60647 * 22 21 20 24 24 N 1.28765 * 109.93179 * 0.40813 * 23 22 21 25 25 H 1.08998 * 109.47156 * 264.78440 * 1 2 3 26 26 H 1.09001 * 109.47013 * 24.78257 * 1 2 3 27 27 H 1.08999 * 109.46876 * 144.78392 * 1 2 3 28 28 H 1.09001 * 109.47298 * 30.00575 * 3 2 1 29 29 H 1.09008 * 109.47092 * 150.00281 * 3 2 1 30 30 H 0.96998 * 119.99771 * 179.97438 * 7 6 4 31 31 H 1.07994 * 120.04433 * 359.95612 * 15 14 12 32 32 H 1.08003 * 119.84573 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.81091 * 180.02562 * 17 16 15 34 34 H 1.08004 * 119.96459 * 180.30113 * 18 17 16 35 35 H 1.08004 * 126.60936 * 359.96590 * 21 20 19 36 36 H 1.07998 * 125.49405 * 179.76463 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1268 2.8776 -1.6726 7 7 3.3464 3.2571 -2.9126 8 14 3.7337 3.9288 -0.2528 9 1 5.1068 3.5070 0.1239 10 1 3.7495 5.3555 -0.6646 11 1 2.8271 3.7596 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3519 -1.1688 0.0824 14 6 1.4042 -2.4436 -0.1017 15 6 0.3968 -2.7485 0.8158 16 6 -0.2860 -3.9419 0.7156 17 6 0.0227 -4.8415 -0.2912 18 6 1.0132 -4.5502 -1.2085 19 6 1.7143 -3.3566 -1.1191 20 7 2.7213 -3.0627 -2.0434 21 6 3.2130 -3.8908 -3.0082 22 6 4.1708 -3.2011 -3.6627 23 7 4.2680 -1.9817 -3.1312 24 7 3.4277 -1.8562 -2.1636 25 1 -0.3633 -0.0934 1.0234 26 1 -0.3633 0.9330 -0.4308 27 1 -0.3633 -0.8396 -0.5926 28 1 1.6084 2.0284 0.5139 29 1 3.1500 1.1384 0.5138 30 1 3.8232 4.0830 -3.0897 31 1 0.1531 -2.0505 1.6030 32 1 -1.0648 -4.1769 1.4261 33 1 -0.5176 -5.7739 -0.3625 34 1 1.2451 -5.2545 -1.9939 35 1 2.8996 -4.9050 -3.2075 36 1 4.7613 -3.5753 -4.4858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182361932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = 126.392718 kcal Electronic energy + Delta-G solvation = -22702.258860 eV Core-core repulsion = 19383.384974 eV Total energy + Delta-G solvation = -3318.873885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.88241 -39.89677 -38.05995 -34.96710 -34.22083 -32.51402 -31.49707 -30.42500 -29.56850 -28.25768 -26.03126 -24.41650 -23.80608 -22.40688 -21.24455 -20.99954 -19.21675 -18.05137 -16.85261 -16.77369 -15.79259 -15.48924 -15.37805 -15.21985 -14.83645 -14.31743 -14.11536 -13.83246 -13.74909 -13.08286 -12.96333 -12.47781 -12.30567 -12.06555 -11.95765 -11.60298 -11.39288 -11.04454 -10.92023 -10.76025 -10.67166 -10.43141 -10.06168 -9.44284 -9.24076 -9.15681 -8.94903 -8.44227 -8.37855 -7.60568 -5.93170 -3.90405 0.53505 0.93226 2.02603 2.38371 2.94507 3.26607 3.37797 3.43178 3.46074 3.54553 3.96281 4.36122 4.51698 4.54358 4.70242 4.82269 4.88099 5.08671 5.18566 5.26972 5.38729 5.40291 5.53152 5.61661 5.67950 5.83047 5.98474 6.14606 6.16127 6.18394 6.37957 6.47506 6.76214 6.96890 7.05008 7.41065 7.73985 8.26863 8.57578 8.62146 9.00242 9.14259 9.66650 11.20574 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.006597 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.744571 B = 4243.250032 C = 5435.847675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.589 5.589 3 C 0.219 3.781 4 C -0.518 4.518 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.267 1.267 12 C 0.554 3.446 13 O -0.506 6.506 14 C -0.108 4.108 15 C -0.071 4.071 16 C -0.127 4.127 17 C -0.086 4.086 18 C -0.138 4.138 19 C 0.185 3.815 20 N -0.337 5.337 21 C -0.002 4.002 22 C -0.075 4.075 23 N -0.232 5.232 24 N 0.026 4.974 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.262 0.738 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.189 0.811 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 -18.775 4.951 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.321 5.321 3 C 0.098 3.902 4 C -0.556 4.556 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.535 5.535 8 Si 0.700 3.300 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.192 1.192 12 C 0.338 3.662 13 O -0.381 6.381 14 C -0.114 4.114 15 C -0.090 4.090 16 C -0.146 4.146 17 C -0.105 4.105 18 C -0.159 4.159 19 C 0.091 3.909 20 N -0.119 5.119 21 C -0.150 4.150 22 C -0.227 4.227 23 N -0.104 5.104 24 N 0.048 4.952 25 H 0.063 0.937 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.206 0.794 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.776 -17.150 5.374 20.001 hybrid contribution 0.101 -0.535 0.077 0.550 sum -8.675 -17.685 5.451 20.438 Atomic orbital electron populations 1.21723 0.81194 1.03216 0.99949 1.47683 1.06053 1.06745 1.71598 1.19689 0.92381 0.79421 0.98665 1.21269 1.36547 1.06747 0.91066 0.90642 1.24820 0.95348 0.97384 0.95347 1.69906 1.41666 1.23422 1.18528 0.86916 0.80201 0.79766 0.83130 1.19972 1.21231 1.19218 1.17716 0.87158 0.82857 0.78427 1.90795 1.12883 1.86426 1.47954 1.20070 0.98575 0.96606 0.96156 1.21292 0.92877 0.97228 0.97614 1.21165 1.00534 0.93868 0.99061 1.21056 0.96093 0.99557 0.93782 1.20809 0.97924 0.95365 1.01785 1.17466 0.89108 0.94778 0.89551 1.48273 1.27144 1.13128 1.23362 1.23373 0.99442 0.99040 0.93099 1.23258 1.02631 0.91517 1.05326 1.74574 1.14979 1.16926 1.03878 1.83046 1.02350 0.97949 1.11871 0.93657 0.90358 0.92541 0.95295 0.94460 0.92780 0.84315 0.84821 0.84688 0.84726 0.79436 0.79781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 9.19 59.85 0.55 1.90 16 2 N -0.59 -12.83 2.86 -184.16 -0.53 -13.35 16 3 C 0.22 5.59 4.24 -5.19 -0.02 5.57 16 4 C -0.52 -15.55 9.94 -34.44 -0.34 -15.90 16 5 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 6 C 0.07 2.22 5.47 -17.82 -0.10 2.12 16 7 N -0.90 -28.87 13.96 55.43 0.77 -28.09 16 8 Si 0.87 22.49 27.47 -169.99 -4.67 17.82 16 9 H -0.27 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 12 C 0.55 12.19 5.79 -12.43 -0.07 12.12 16 13 O -0.51 -13.33 14.20 5.30 0.08 -13.26 16 14 C -0.11 -1.83 4.66 -104.82 -0.49 -2.32 16 15 C -0.07 -0.86 8.00 -39.20 -0.31 -1.17 16 16 C -0.13 -1.12 10.02 -39.62 -0.40 -1.52 16 17 C -0.09 -0.72 10.03 -39.53 -0.40 -1.11 16 18 C -0.14 -1.46 9.47 -39.45 -0.37 -1.84 16 19 C 0.19 2.93 6.70 -83.32 -0.56 2.37 16 20 N -0.34 -6.17 3.82 -10.32 -0.04 -6.21 16 21 C 0.00 -0.03 10.91 -16.72 -0.18 -0.21 16 22 C -0.07 -1.19 11.86 -18.04 -0.21 -1.41 16 23 N -0.23 -5.25 12.33 30.09 0.37 -4.87 16 24 N 0.03 0.63 9.60 60.35 0.58 1.21 16 25 H 0.04 0.57 7.38 -51.93 -0.38 0.19 16 26 H 0.08 1.31 8.03 -51.93 -0.42 0.89 16 27 H 0.06 0.84 6.51 -51.93 -0.34 0.50 16 28 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 29 H 0.04 1.02 6.79 -51.92 -0.35 0.67 16 30 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 31 H 0.14 1.47 6.98 -52.49 -0.37 1.10 16 32 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 33 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.13 1.02 6.88 -52.48 -0.36 0.66 16 35 H 0.19 1.50 7.22 -52.48 -0.38 1.12 16 36 H 0.19 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -40.25 308.74 -5.52 -45.77 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: -3.83 Total: -2.28 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.91 Total: -1.39 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 1.16 Total: -51.32 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.26 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -40.25 -5.52 -45.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182361932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.161 kcal (2) G-P(sol) polarization free energy of solvation -40.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds