Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 119.99704 * 2 1 4 4 C 1.50699 * 109.47520 * 270.00149 * 3 2 1 5 5 H 1.08000 * 119.99592 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99940 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00160 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47127 * 89.99972 * 8 6 4 10 10 H 1.48498 * 109.47045 * 210.00352 * 8 6 4 11 11 H 1.48500 * 109.46951 * 330.00228 * 8 6 4 12 12 C 1.34775 * 120.00101 * 180.02562 * 2 1 3 13 13 O 1.21579 * 119.99927 * 184.51624 * 12 2 1 14 14 C 1.47629 * 119.99768 * 4.51330 * 12 2 1 15 15 C 1.39623 * 120.18768 * 304.43463 * 14 12 2 16 16 C 1.37862 * 119.90934 * 179.97438 * 15 14 12 17 17 C 1.38499 * 120.30834 * 0.02562 * 16 15 14 18 18 C 1.38102 * 120.38146 * 359.71978 * 17 16 15 19 19 C 1.38721 * 120.07699 * 0.56022 * 18 17 16 20 20 N 1.39804 * 120.15519 * 179.72355 * 19 18 17 21 21 C 1.36328 * 126.86701 * 353.54310 * 20 19 18 22 22 C 1.34962 * 106.78085 * 180.22366 * 21 20 19 23 23 N 1.33377 * 109.01214 * 359.60647 * 22 21 20 24 24 N 1.28765 * 109.93179 * 0.40813 * 23 22 21 25 25 H 1.08998 * 109.47156 * 264.78440 * 1 2 3 26 26 H 1.09001 * 109.47013 * 24.78257 * 1 2 3 27 27 H 1.08999 * 109.46876 * 144.78392 * 1 2 3 28 28 H 1.09001 * 109.47298 * 30.00575 * 3 2 1 29 29 H 1.09008 * 109.47092 * 150.00281 * 3 2 1 30 30 H 0.96998 * 119.99771 * 179.97438 * 7 6 4 31 31 H 1.07994 * 120.04433 * 359.95612 * 15 14 12 32 32 H 1.08003 * 119.84573 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.81091 * 180.02562 * 17 16 15 34 34 H 1.08004 * 119.96459 * 180.30113 * 18 17 16 35 35 H 1.08004 * 126.60936 * 359.96590 * 21 20 19 36 36 H 1.07998 * 125.49405 * 179.76463 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2416 6 6 3.1268 2.8776 -1.6726 7 7 3.3464 3.2571 -2.9126 8 14 3.7337 3.9288 -0.2528 9 1 5.1068 3.5070 0.1239 10 1 3.7495 5.3555 -0.6646 11 1 2.8271 3.7596 0.9112 12 6 2.1389 -1.1672 -0.0005 13 8 3.3519 -1.1688 0.0824 14 6 1.4042 -2.4436 -0.1017 15 6 0.3968 -2.7485 0.8158 16 6 -0.2860 -3.9419 0.7156 17 6 0.0227 -4.8415 -0.2912 18 6 1.0132 -4.5502 -1.2085 19 6 1.7143 -3.3566 -1.1191 20 7 2.7213 -3.0627 -2.0434 21 6 3.2130 -3.8908 -3.0082 22 6 4.1708 -3.2011 -3.6627 23 7 4.2680 -1.9817 -3.1312 24 7 3.4277 -1.8562 -2.1636 25 1 -0.3633 -0.0934 1.0234 26 1 -0.3633 0.9330 -0.4308 27 1 -0.3633 -0.8396 -0.5926 28 1 1.6084 2.0284 0.5139 29 1 3.1500 1.1384 0.5138 30 1 3.8232 4.0830 -3.0897 31 1 0.1531 -2.0505 1.6030 32 1 -1.0648 -4.1769 1.4261 33 1 -0.5176 -5.7739 -0.3625 34 1 1.2451 -5.2545 -1.9939 35 1 2.8996 -4.9050 -3.2075 36 1 4.7613 -3.5753 -4.4858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182361932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = 94.415567 kcal Electronic energy + Delta-G solvation = -22703.645493 eV Core-core repulsion = 19383.384974 eV Total energy + Delta-G solvation = -3320.260519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.15014 -41.16390 -39.37003 -36.66428 -35.45176 -34.68326 -32.69275 -31.62172 -30.70499 -30.12778 -27.50749 -25.82513 -24.92445 -24.10374 -22.47342 -22.24060 -20.59594 -19.20192 -19.10865 -18.16602 -17.31386 -16.75572 -16.68461 -16.36324 -16.11322 -15.79118 -15.63607 -15.07752 -14.88867 -14.73409 -14.29872 -14.04118 -13.78355 -13.67662 -13.24575 -13.03261 -12.84597 -12.54701 -12.46556 -12.16403 -12.08104 -12.01061 -12.00888 -11.72244 -10.81756 -10.77748 -10.33754 -10.03122 -9.46840 -9.36626 -8.30581 -6.33962 -0.51716 0.08245 0.94544 1.27477 1.29204 1.34697 1.41711 1.63959 1.82578 2.30752 2.33205 2.73167 3.03028 3.35831 3.57524 3.64349 3.91056 4.08869 4.14993 4.26164 4.30865 4.33445 4.39046 4.58100 4.62960 4.71077 4.85726 4.87235 4.94333 5.12217 5.24654 5.31212 5.38244 5.47848 5.62183 5.66475 5.97074 6.27976 6.65284 6.67336 7.22137 7.25988 7.43963 8.87472 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.006597 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.744571 B = 4243.250032 C = 5435.847675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.602 5.602 3 C 0.229 3.771 4 C -0.519 4.519 5 H 0.019 0.981 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.949 3.051 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.234 1.234 12 C 0.548 3.452 13 O -0.567 6.567 14 C -0.145 4.145 15 C -0.074 4.074 16 C -0.106 4.106 17 C -0.066 4.066 18 C -0.124 4.124 19 C 0.138 3.862 20 N -0.335 5.335 21 C 0.028 3.972 22 C -0.091 4.091 23 N -0.297 5.297 24 N -0.066 5.066 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.013 0.987 30 H 0.266 0.734 31 H 0.150 0.850 32 H 0.180 0.820 33 H 0.188 0.812 34 H 0.172 0.828 35 H 0.257 0.743 36 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 -22.542 7.042 27.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.333 5.333 3 C 0.107 3.893 4 C -0.558 4.558 5 H 0.038 0.962 6 C -0.190 4.190 7 N -0.588 5.588 8 Si 0.771 3.229 9 H -0.208 1.208 10 H -0.197 1.197 11 H -0.157 1.157 12 C 0.335 3.665 13 O -0.445 6.445 14 C -0.151 4.151 15 C -0.093 4.093 16 C -0.124 4.124 17 C -0.084 4.084 18 C -0.144 4.144 19 C 0.045 3.955 20 N -0.118 5.118 21 C -0.121 4.121 22 C -0.246 4.246 23 N -0.167 5.167 24 N -0.043 5.043 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.167 0.833 32 H 0.197 0.803 33 H 0.205 0.795 34 H 0.190 0.810 35 H 0.273 0.727 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -12.214 -20.901 7.504 25.344 hybrid contribution 0.989 0.325 -0.637 1.220 sum -11.225 -20.576 6.867 24.424 Atomic orbital electron populations 1.21979 0.77945 1.03257 1.02913 1.47772 1.08165 1.05635 1.71758 1.19298 0.92485 0.82124 0.95375 1.21424 1.36265 1.06033 0.92061 0.96223 1.25872 0.95403 0.99105 0.98648 1.70082 1.43023 1.24377 1.21351 0.85716 0.79372 0.77782 0.79991 1.20833 1.19653 1.15704 1.18593 0.86854 0.84574 0.76434 1.90732 1.15823 1.87632 1.50327 1.19854 1.01085 0.94665 0.99479 1.21510 0.91870 0.99188 0.96714 1.21724 0.99695 0.91730 0.99227 1.21738 0.94250 1.00785 0.91599 1.21334 0.96867 0.93320 1.02913 1.18134 0.90371 0.97016 0.89991 1.48528 1.26843 1.12393 1.23992 1.24439 0.97003 1.00500 0.90158 1.24080 1.04000 0.90039 1.06500 1.74475 1.16415 1.20597 1.05173 1.82982 1.05495 1.01547 1.14230 0.89159 0.91453 0.91199 0.92846 0.96856 0.92529 0.83258 0.80295 0.79515 0.81039 0.72736 0.76072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 9.19 127.77 1.17 3.78 16 2 N -0.60 -27.42 2.86 -854.82 -2.44 -29.86 16 3 C 0.23 12.31 4.24 85.63 0.36 12.67 16 4 C -0.52 -33.52 9.94 25.60 0.25 -33.27 16 5 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 6 C 0.01 0.43 5.47 84.65 0.46 0.90 16 7 N -0.95 -64.87 13.96 21.45 0.30 -64.57 16 8 Si 0.95 48.25 27.47 68.60 1.88 50.13 16 9 H -0.28 -14.66 7.11 99.48 0.71 -13.95 16 10 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.23 -10.55 6.54 99.48 0.65 -9.90 16 12 C 0.55 25.54 5.79 86.72 0.50 26.05 16 13 O -0.57 -32.55 14.20 -3.97 -0.06 -32.61 16 14 C -0.15 -4.89 4.66 -19.99 -0.09 -4.98 16 15 C -0.07 -1.56 8.00 22.52 0.18 -1.38 16 16 C -0.11 -1.20 10.02 22.24 0.22 -0.97 16 17 C -0.07 -0.62 10.03 22.30 0.22 -0.40 16 18 C -0.12 -2.00 9.47 22.35 0.21 -1.79 16 19 C 0.14 4.20 6.70 38.46 0.26 4.46 16 20 N -0.34 -12.55 3.82 -186.57 -0.71 -13.26 16 21 C 0.03 0.74 10.91 83.24 0.91 1.65 16 22 C -0.09 -3.00 11.86 83.70 0.99 -2.00 16 23 N -0.30 -14.73 12.33 -58.72 -0.72 -15.46 16 24 N -0.07 -3.44 9.60 37.02 0.36 -3.09 16 25 H 0.09 2.07 7.38 -2.39 -0.02 2.05 16 26 H 0.07 2.28 8.03 -2.39 -0.02 2.26 16 27 H 0.07 2.03 6.51 -2.39 -0.02 2.02 16 28 H 0.05 2.57 7.13 -2.39 -0.02 2.56 16 29 H 0.01 0.78 6.79 -2.38 -0.02 0.76 16 30 H 0.27 16.87 8.31 -92.71 -0.77 16.10 16 31 H 0.15 2.69 6.98 -2.91 -0.02 2.67 16 32 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 33 H 0.19 0.02 8.06 -2.91 -0.02 0.00 16 34 H 0.17 1.40 6.88 -2.91 -0.02 1.38 16 35 H 0.26 2.68 7.22 -2.91 -0.02 2.66 16 36 H 0.22 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -106.20 308.74 5.32 -100.88 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.05 Total: 3.12 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 5.66 Total: 4.71 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -3.22 Total: -126.24 kcal Atomic # 8 Polarization: -32.55 SS G_CDS: -0.06 Total: -32.61 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 1.88 Total: 50.13 kcal Total: -106.20 5.32 -100.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182361932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.293 kcal (2) G-P(sol) polarization free energy of solvation -106.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds