Wall clock time and date at job start Tue Mar 31 2020 05:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47396 * 2 1 4 4 C 1.50701 * 109.47229 * 119.99737 * 2 1 3 5 5 O 1.21288 * 120.00357 * 120.00068 * 4 2 1 6 6 N 1.34778 * 119.99915 * 300.00027 * 4 2 1 7 7 C 1.39936 * 119.99703 * 175.95894 * 6 4 2 8 8 C 1.39290 * 119.94165 * 214.91800 * 7 6 4 9 9 C 1.38492 * 120.42467 * 179.72161 * 8 7 6 10 10 C 1.37683 * 120.32028 * 0.55859 * 9 8 7 11 11 C 1.40736 * 119.88544 * 359.72052 * 10 9 8 12 12 C 1.41409 * 120.21038 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00126 * 214.72643 * 12 11 10 14 14 C 1.39934 * 119.99857 * 34.72470 * 12 11 10 15 15 N 1.30822 * 120.00152 * 355.57083 * 14 12 11 16 16 Si 1.86802 * 119.99938 * 175.57139 * 14 12 11 17 17 H 1.48501 * 109.47170 * 59.99924 * 16 14 12 18 18 H 1.48495 * 109.47425 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47243 * 300.00140 * 16 14 12 20 20 C 1.38240 * 119.95261 * 35.19630 * 7 6 4 21 21 N 1.46503 * 109.47406 * 239.99982 * 2 1 3 22 22 C 1.34435 * 126.81779 * 324.99924 * 21 2 1 23 23 N 1.30830 * 108.07578 * 179.97438 * 22 21 2 24 24 C 1.33248 * 109.82920 * 359.97438 * 23 22 21 25 25 N 1.30711 * 108.94281 * 359.76133 * 24 23 22 26 26 H 1.09001 * 109.47280 * 60.00131 * 1 2 3 27 27 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47130 * 300.00096 * 1 2 3 29 29 H 0.96994 * 119.99745 * 355.68165 * 6 4 2 30 30 H 1.07999 * 119.79114 * 0.02562 * 8 7 6 31 31 H 1.08004 * 119.83851 * 180.27529 * 9 8 7 32 32 H 1.08001 * 120.05556 * 179.74995 * 10 9 8 33 33 H 0.97006 * 120.00349 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.15709 * 359.96878 * 20 7 6 35 35 H 1.08000 * 125.96059 * 359.92276 * 22 21 2 36 36 H 1.08001 * 125.52614 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1019 -0.9565 3.5959 8 6 1.2726 -0.9904 4.7145 9 6 1.6512 -1.6915 5.8473 10 6 2.8577 -2.3537 5.8840 11 6 3.7086 -2.3235 4.7633 12 6 4.9491 -3.0016 4.7934 13 1 5.8031 -2.5882 4.2774 14 6 5.0702 -4.2082 5.4916 15 7 4.0613 -4.6651 6.1880 16 14 6.6724 -5.1666 5.4294 17 1 7.7723 -4.3277 5.9694 18 1 6.5434 -6.4002 6.2460 19 1 6.9751 -5.5342 4.0228 20 6 3.3172 -1.6151 3.6135 21 7 2.0184 -0.6906 -1.1962 22 6 1.4558 -1.7519 -1.7998 23 7 2.1932 -2.0694 -2.8328 24 6 3.2300 -1.2371 -2.9210 25 7 3.1635 -0.3715 -1.9439 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.2020 0.5735 2.5445 30 1 0.3260 -0.4707 4.6966 31 1 0.9988 -1.7151 6.7077 32 1 3.1505 -2.8958 6.7710 33 1 4.1453 -5.5013 6.6723 34 1 3.9627 -1.5861 2.7481 35 1 0.5532 -2.2552 -1.4862 36 1 3.9985 -1.2700 -3.6791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313455759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:43 Heat of formation + Delta-G solvation = 85.090640 kcal Electronic energy + Delta-G solvation = -21722.433553 eV Core-core repulsion = 18401.768675 eV Total energy + Delta-G solvation = -3320.664878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.11828 -39.95150 -37.38490 -35.06358 -34.60457 -33.06561 -31.36128 -30.23271 -29.85613 -28.13237 -25.42579 -25.25104 -22.76391 -21.89302 -21.21753 -20.80106 -19.72993 -18.12226 -17.23348 -17.02207 -15.67253 -15.50625 -15.26593 -14.96205 -14.77231 -14.62842 -14.24238 -13.86363 -13.18896 -13.00347 -12.89031 -12.77075 -12.48636 -12.17439 -11.83601 -11.62536 -11.22292 -11.19094 -10.73566 -10.51040 -10.37021 -10.05179 -10.00626 -9.91776 -9.73628 -9.41633 -9.10813 -8.95466 -7.44087 -6.99016 -6.60609 -4.40583 1.58351 2.11030 2.38838 2.79696 3.00547 3.07957 3.10649 3.13504 3.23164 3.39534 4.00126 4.20752 4.30931 4.47005 4.60622 4.69728 4.79284 5.10132 5.11383 5.28938 5.55690 5.61263 6.14227 6.19294 6.27472 6.43540 6.58315 6.70155 6.89389 6.96040 7.05312 7.27408 7.44473 7.64880 7.87703 8.01901 8.05747 8.08300 8.20242 8.47946 8.65358 8.92924 8.94215 10.30233 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.004607 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.036118 B = 6076.020136 C = 7345.522191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 H 0.130 0.870 4 C 0.490 3.510 5 O -0.494 6.494 6 N -0.659 5.659 7 C 0.137 3.863 8 C -0.248 4.248 9 C -0.099 4.099 10 C -0.158 4.158 11 C 0.113 3.887 12 C -0.460 4.460 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.812 5.812 16 Si 0.915 3.085 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.198 4.198 21 N -0.360 5.360 22 C 0.271 3.729 23 N -0.548 5.548 24 C 0.198 3.802 25 N -0.314 5.314 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.399 0.601 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.278 0.722 34 H 0.110 0.890 35 H 0.214 0.786 36 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.158 8.834 -9.489 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.032 3.968 3 H 0.147 0.853 4 C 0.273 3.727 5 O -0.367 6.367 6 N -0.304 5.304 7 C 0.046 3.954 8 C -0.269 4.269 9 C -0.118 4.118 10 C -0.178 4.178 11 C 0.110 3.890 12 C -0.491 4.491 13 H 0.092 0.908 14 C -0.143 4.143 15 N -0.439 5.439 16 Si 0.740 3.260 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.191 1.191 20 C -0.220 4.220 21 N -0.150 5.150 22 C -0.026 4.026 23 N -0.275 5.275 24 C -0.105 4.105 25 N -0.141 5.141 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.234 0.766 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.231 0.769 36 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.271 8.245 -9.515 14.539 hybrid contribution 0.210 -0.221 0.234 0.384 sum -7.062 8.024 -9.281 14.155 Atomic orbital electron populations 1.22173 0.90174 1.04705 1.04845 1.21212 0.96259 0.97949 0.81373 0.85269 1.20535 0.82040 0.85666 0.84480 1.90852 1.34832 1.25266 1.85743 1.43286 1.55974 1.26505 1.04586 1.17427 0.94646 0.98188 0.85153 1.20095 0.99850 1.11328 0.95639 1.20555 0.97039 0.98091 0.96152 1.21663 0.94907 1.01501 0.99697 1.17560 0.93213 0.88965 0.89257 1.19473 0.96640 1.04858 1.28093 0.90758 1.25842 0.97769 0.97810 0.92908 1.69735 1.30746 1.19590 1.23813 0.86251 0.81694 0.78777 0.79268 1.19001 1.20344 1.19065 1.21217 0.95311 1.06701 0.98729 1.50019 1.19142 1.24493 1.21384 1.25878 0.99186 0.87880 0.89686 1.70556 1.07232 1.28590 1.21096 1.25957 0.97253 0.90114 0.97175 1.78029 1.02806 1.25389 1.07841 0.90110 0.90561 0.88861 0.76633 0.89115 0.88825 0.85227 0.91082 0.87171 0.76942 0.76726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.75 37.15 0.33 -0.79 16 2 C 0.14 1.58 3.77 -69.08 -0.26 1.32 16 3 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.49 8.08 7.06 -10.98 -0.08 8.00 16 5 O -0.49 -11.04 13.87 5.55 0.08 -10.96 16 6 N -0.66 -10.45 5.20 -9.91 -0.05 -10.50 16 7 C 0.14 2.93 6.29 -83.77 -0.53 2.41 16 8 C -0.25 -5.11 9.97 -39.10 -0.39 -5.50 16 9 C -0.10 -2.23 10.02 -39.69 -0.40 -2.63 16 10 C -0.16 -4.08 8.67 -38.84 -0.34 -4.41 16 11 C 0.11 3.08 5.55 -106.85 -0.59 2.49 16 12 C -0.46 -12.74 9.04 -37.74 -0.34 -13.09 16 13 H 0.07 2.01 7.85 -52.49 -0.41 1.60 16 14 C 0.07 1.87 5.42 -17.35 -0.09 1.78 16 15 N -0.81 -21.53 10.60 55.55 0.59 -20.94 16 16 Si 0.92 19.77 29.56 -169.99 -5.03 14.75 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 20 C -0.20 -5.06 8.43 -38.69 -0.33 -5.39 16 21 N -0.36 -4.99 3.04 -57.24 -0.17 -5.16 16 22 C 0.27 3.57 11.77 -90.65 -1.07 2.50 16 23 N -0.55 -8.04 11.19 -15.83 -0.18 -8.22 16 24 C 0.20 2.74 13.03 -91.81 -1.20 1.55 16 25 N -0.31 -4.83 12.70 29.29 0.37 -4.46 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.54 7.22 -51.93 -0.37 0.17 16 28 H 0.09 0.48 7.67 -51.93 -0.40 0.08 16 29 H 0.40 4.44 8.38 -40.82 -0.34 4.10 16 30 H 0.09 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 33 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 34 H 0.11 2.97 6.24 -52.49 -0.33 2.65 16 35 H 0.21 2.00 7.32 -52.49 -0.38 1.62 16 36 H 0.22 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 314.79 15.07 4.74 4.74 Total: -1.00 -34.95 314.79 -8.74 -43.69 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -3.81 Total: 8.83 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -5.28 Total: -11.76 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.56 Total: -49.29 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.95 -8.74 -43.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313455759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.780 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds