Wall clock time and date at job start Tue Mar 31 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47396 * 2 1 4 4 C 1.50701 * 109.47229 * 119.99737 * 2 1 3 5 5 O 1.21288 * 120.00357 * 120.00068 * 4 2 1 6 6 N 1.34778 * 119.99915 * 300.00027 * 4 2 1 7 7 C 1.39936 * 119.99703 * 175.95894 * 6 4 2 8 8 C 1.39290 * 119.94165 * 214.91800 * 7 6 4 9 9 C 1.38492 * 120.42467 * 179.72161 * 8 7 6 10 10 C 1.37683 * 120.32028 * 0.55859 * 9 8 7 11 11 C 1.40736 * 119.88544 * 359.72052 * 10 9 8 12 12 C 1.41409 * 120.21038 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00126 * 214.72643 * 12 11 10 14 14 C 1.39934 * 119.99857 * 34.72470 * 12 11 10 15 15 N 1.30822 * 120.00152 * 355.57083 * 14 12 11 16 16 Si 1.86802 * 119.99938 * 175.57139 * 14 12 11 17 17 H 1.48501 * 109.47170 * 59.99924 * 16 14 12 18 18 H 1.48495 * 109.47425 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47243 * 300.00140 * 16 14 12 20 20 C 1.38240 * 119.95261 * 35.19630 * 7 6 4 21 21 N 1.46503 * 109.47406 * 239.99982 * 2 1 3 22 22 C 1.34435 * 126.81779 * 324.99924 * 21 2 1 23 23 N 1.30830 * 108.07578 * 179.97438 * 22 21 2 24 24 C 1.33248 * 109.82920 * 359.97438 * 23 22 21 25 25 N 1.30711 * 108.94281 * 359.76133 * 24 23 22 26 26 H 1.09001 * 109.47280 * 60.00131 * 1 2 3 27 27 H 1.09001 * 109.47396 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47130 * 300.00096 * 1 2 3 29 29 H 0.96994 * 119.99745 * 355.68165 * 6 4 2 30 30 H 1.07999 * 119.79114 * 0.02562 * 8 7 6 31 31 H 1.08004 * 119.83851 * 180.27529 * 9 8 7 32 32 H 1.08001 * 120.05556 * 179.74995 * 10 9 8 33 33 H 0.97006 * 120.00349 * 180.02562 * 15 14 12 34 34 H 1.07999 * 120.15709 * 359.96878 * 20 7 6 35 35 H 1.08000 * 125.96059 * 359.92276 * 22 21 2 36 36 H 1.08001 * 125.52614 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1019 -0.9565 3.5959 8 6 1.2726 -0.9904 4.7145 9 6 1.6512 -1.6915 5.8473 10 6 2.8577 -2.3537 5.8840 11 6 3.7086 -2.3235 4.7633 12 6 4.9491 -3.0016 4.7934 13 1 5.8031 -2.5882 4.2774 14 6 5.0702 -4.2082 5.4916 15 7 4.0613 -4.6651 6.1880 16 14 6.6724 -5.1666 5.4294 17 1 7.7723 -4.3277 5.9694 18 1 6.5434 -6.4002 6.2460 19 1 6.9751 -5.5342 4.0228 20 6 3.3172 -1.6151 3.6135 21 7 2.0184 -0.6906 -1.1962 22 6 1.4558 -1.7519 -1.7998 23 7 2.1932 -2.0694 -2.8328 24 6 3.2300 -1.2371 -2.9210 25 7 3.1635 -0.3715 -1.9439 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.2020 0.5735 2.5445 30 1 0.3260 -0.4707 4.6966 31 1 0.9988 -1.7151 6.7077 32 1 3.1505 -2.8958 6.7710 33 1 4.1453 -5.5013 6.6723 34 1 3.9627 -1.5861 2.7481 35 1 0.5532 -2.2552 -1.4862 36 1 3.9985 -1.2700 -3.6791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313455759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:42 Heat of formation + Delta-G solvation = 62.828067 kcal Electronic energy + Delta-G solvation = -21723.398930 eV Core-core repulsion = 18401.768675 eV Total energy + Delta-G solvation = -3321.630255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.117 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.14910 -41.37409 -39.11389 -36.28721 -36.11400 -34.83509 -32.40245 -31.75564 -31.29931 -29.68161 -27.28729 -26.24682 -24.09426 -22.97038 -22.85381 -22.35088 -21.11014 -19.70499 -18.70707 -18.09866 -17.36928 -16.91104 -16.60753 -16.42847 -16.24156 -15.97126 -15.35458 -15.10138 -14.81071 -14.67341 -14.09709 -13.86326 -13.61230 -13.39493 -13.31354 -13.01712 -12.94627 -12.58327 -12.52111 -12.24278 -12.05194 -11.70646 -11.43408 -11.11024 -11.07650 -10.88042 -10.80003 -10.45387 -9.33982 -8.76541 -8.53242 -6.45078 0.52921 0.80815 0.96041 1.17677 1.31758 1.42118 1.44852 1.61273 1.96158 2.13233 2.20158 2.74907 3.33780 3.43237 3.53645 3.66435 3.74210 3.94159 4.24249 4.45931 4.59502 4.60988 4.67281 4.97849 5.05356 5.08650 5.11333 5.16541 5.22462 5.33104 5.43592 5.69545 5.77984 5.82031 6.05262 6.12097 6.33705 6.49987 6.68424 6.92915 6.98020 7.04790 7.18331 8.38247 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.004607 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.036118 B = 6076.020136 C = 7345.522191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.149 3.851 3 H 0.153 0.847 4 C 0.488 3.512 5 O -0.559 6.559 6 N -0.642 5.642 7 C 0.147 3.853 8 C -0.226 4.226 9 C -0.099 4.099 10 C -0.183 4.183 11 C 0.079 3.921 12 C -0.507 4.507 13 H 0.059 0.941 14 C 0.031 3.969 15 N -0.839 5.839 16 Si 0.982 3.018 17 H -0.257 1.257 18 H -0.260 1.260 19 H -0.273 1.273 20 C -0.226 4.226 21 N -0.368 5.368 22 C 0.269 3.731 23 N -0.574 5.574 24 C 0.194 3.806 25 N -0.349 5.349 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.427 0.573 30 H 0.144 0.856 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.285 0.715 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 10.263 -9.852 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.171 0.829 4 C 0.274 3.726 5 O -0.436 6.436 6 N -0.289 5.289 7 C 0.054 3.946 8 C -0.247 4.247 9 C -0.118 4.118 10 C -0.203 4.203 11 C 0.076 3.924 12 C -0.538 4.538 13 H 0.077 0.923 14 C -0.180 4.180 15 N -0.467 5.467 16 Si 0.803 3.197 17 H -0.181 1.181 18 H -0.184 1.184 19 H -0.198 1.198 20 C -0.247 4.247 21 N -0.158 5.158 22 C -0.028 4.028 23 N -0.301 5.301 24 C -0.109 4.109 25 N -0.176 5.176 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.267 0.733 30 H 0.162 0.838 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.262 0.738 36 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.915 9.745 -9.873 17.051 hybrid contribution 0.876 -0.546 0.291 1.072 sum -9.039 9.199 -9.582 16.067 Atomic orbital electron populations 1.22293 0.86060 1.05540 1.07355 1.21470 0.99029 0.97501 0.77770 0.82942 1.21555 0.80387 0.84832 0.85814 1.90845 1.37588 1.28399 1.86730 1.43107 1.55671 1.27035 1.03077 1.17469 0.92995 0.96928 0.87216 1.20598 1.00931 1.09277 0.93861 1.20956 0.95951 0.96793 0.98052 1.21586 0.96681 1.03224 0.98820 1.17869 0.93891 0.90086 0.90529 1.19661 0.97034 1.06813 1.30309 0.92307 1.26625 1.01247 0.98030 0.92145 1.69796 1.32335 1.20165 1.24387 0.85260 0.77613 0.77887 0.78920 1.18082 1.18391 1.19820 1.21128 0.97229 1.08872 0.97477 1.50215 1.18822 1.25001 1.21802 1.26552 0.99719 0.87432 0.89050 1.70566 1.07981 1.29310 1.22283 1.26594 0.97553 0.89396 0.97342 1.77950 1.04108 1.26739 1.08803 0.87772 0.90587 0.86138 0.73297 0.83819 0.85521 0.87101 0.90444 0.90009 0.73834 0.74012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.75 71.98 0.63 -0.80 16 2 C 0.15 2.96 3.77 44.24 0.17 3.13 16 3 H 0.15 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.49 15.43 7.06 87.66 0.62 16.04 16 5 O -0.56 -25.52 13.87 -3.05 -0.04 -25.56 16 6 N -0.64 -18.62 5.20 -303.65 -1.58 -20.20 16 7 C 0.15 6.08 6.29 38.10 0.24 6.32 16 8 C -0.23 -8.50 9.97 22.58 0.23 -8.28 16 9 C -0.10 -4.25 10.02 22.20 0.22 -4.03 16 10 C -0.18 -9.69 8.67 22.75 0.20 -9.49 16 11 C 0.08 4.52 5.55 -21.31 -0.12 4.40 16 12 C -0.51 -30.02 9.04 23.46 0.21 -29.81 16 13 H 0.06 3.47 7.85 -2.91 -0.02 3.45 16 14 C 0.03 1.72 5.42 85.25 0.46 2.18 16 15 N -0.84 -46.18 10.60 21.82 0.23 -45.95 16 16 Si 0.98 42.07 29.56 68.60 2.03 44.10 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 C -0.23 -11.96 8.43 22.85 0.19 -11.77 16 21 N -0.37 -9.66 3.04 -335.02 -1.02 -10.68 16 22 C 0.27 6.70 11.77 180.36 2.12 8.82 16 23 N -0.57 -16.43 11.19 -203.99 -2.28 -18.71 16 24 C 0.19 5.28 13.03 180.76 2.36 7.63 16 25 N -0.35 -10.57 12.70 -61.24 -0.78 -11.35 16 26 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.08 0.76 7.22 -2.39 -0.02 0.75 16 28 H 0.12 0.50 7.67 -2.39 -0.02 0.48 16 29 H 0.43 7.48 8.38 -92.71 -0.78 6.71 16 30 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.11 6.20 6.13 -2.91 -0.02 6.18 16 33 H 0.28 14.23 8.30 -92.70 -0.77 13.46 16 34 H 0.08 4.73 6.24 -2.91 -0.02 4.71 16 35 H 0.25 4.02 7.32 -2.91 -0.02 4.00 16 36 H 0.24 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -83.30 314.79 4.44 -78.86 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.35 Total: 25.15 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 7.53 Total: -15.66 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -5.42 Total: -106.89 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.04 Total: -25.56 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -83.30 4.44 -78.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313455759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.686 kcal (2) G-P(sol) polarization free energy of solvation -83.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds