Wall clock time and date at job start Tue Mar 31 2020 06:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99849 * 2 1 4 4 H 1.48494 * 109.47662 * 270.00332 * 3 2 1 5 5 H 1.48508 * 109.47115 * 30.00366 * 3 2 1 6 6 H 1.48499 * 109.46914 * 149.99836 * 3 2 1 7 7 C 1.37875 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00437 * 359.97438 * 7 2 1 10 10 C 1.53503 * 114.17519 * 180.02562 * 9 7 2 11 11 N 1.47482 * 87.93325 * 220.13939 * 10 9 7 12 12 C 1.46897 * 110.99872 * 138.70219 * 11 10 9 13 13 C 1.50702 * 109.46960 * 170.00044 * 12 11 10 14 14 C 1.36145 * 120.09682 * 259.70114 * 13 12 11 15 15 C 1.39241 * 121.10658 * 179.73260 * 14 13 12 16 16 C 1.36428 * 120.83533 * 0.30914 * 15 14 13 17 17 F 1.35096 * 120.22195 * 179.97438 * 16 15 14 18 18 C 1.40614 * 119.55495 * 359.97438 * 16 15 14 19 19 C 1.40695 * 121.38388 * 180.02562 * 18 16 15 20 20 C 1.36604 * 118.16182 * 179.97438 * 19 18 16 21 21 C 1.39306 * 119.93318 * 0.02562 * 20 19 18 22 22 N 1.31096 * 121.75062 * 359.97438 * 21 20 19 23 23 C 1.33704 * 121.31564 * 0.02562 * 22 21 20 24 24 C 1.47479 * 87.83712 * 27.00732 * 11 10 9 25 25 H 0.96994 * 120.00074 * 359.97438 * 1 2 3 26 26 H 1.09000 * 113.25373 * 312.95160 * 9 7 2 27 27 H 1.09000 * 113.48235 * 105.36821 * 10 9 7 28 28 H 1.09006 * 113.52994 * 334.91113 * 10 9 7 29 29 H 1.08995 * 109.47641 * 50.00266 * 12 11 10 30 30 H 1.09002 * 109.47418 * 289.99747 * 12 11 10 31 31 H 1.08000 * 119.44748 * 0.04137 * 14 13 12 32 32 H 1.07999 * 119.58288 * 180.28528 * 15 14 13 33 33 H 1.08003 * 120.91834 * 359.97438 * 19 18 16 34 34 H 1.07999 * 120.03412 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.12508 * 180.02562 * 21 20 19 36 36 H 1.09001 * 113.47259 * 87.75585 * 24 11 10 37 37 H 1.08998 * 113.48061 * 218.22476 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1497 -3.7437 -0.0005 11 7 1.2050 -4.3602 -0.9507 12 6 1.9206 -5.0901 -2.0057 13 6 0.9384 -5.9037 -2.8083 14 6 0.8021 -7.2375 -2.5713 15 6 -0.1028 -8.0082 -3.2966 16 6 -0.8752 -7.4474 -4.2714 17 9 -1.7488 -8.2069 -4.9678 18 6 -0.7558 -6.0736 -4.5464 19 6 -1.5335 -5.4555 -5.5427 20 6 -1.3644 -4.1166 -5.7545 21 6 -0.4411 -3.4036 -4.9932 22 7 0.2820 -3.9826 -4.0656 23 6 0.1652 -5.2894 -3.8082 24 6 0.8517 -2.9993 -1.3959 25 1 -0.4850 0.8400 0.0004 26 1 0.4453 -2.5309 0.7328 27 1 2.1891 -4.2510 0.9634 28 1 3.1383 -3.5667 -0.4243 29 1 2.6575 -5.7534 -1.5529 30 1 2.4251 -4.3799 -2.6608 31 1 1.4023 -7.7046 -1.8046 32 1 -0.1942 -9.0633 -3.0850 33 1 -2.2445 -6.0239 -6.1240 34 1 -1.9454 -3.6116 -6.5121 35 1 -0.3183 -2.3454 -5.1714 36 1 1.4936 -2.6227 -2.1923 37 1 -0.2089 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194119.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:19 Heat of formation + Delta-G solvation = 48.144321 kcal Electronic energy + Delta-G solvation = -21931.112986 eV Core-core repulsion = 18588.926034 eV Total energy + Delta-G solvation = -3342.186952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.03854 -40.80070 -38.73695 -37.03078 -33.72538 -32.54691 -31.04064 -30.66548 -28.19179 -25.49213 -24.64060 -24.25064 -23.79330 -22.59639 -20.56511 -18.61931 -18.50111 -17.56341 -17.18574 -16.54873 -15.82513 -15.47072 -15.06653 -14.87774 -14.67926 -14.24573 -13.97379 -13.80510 -13.58284 -13.38384 -12.94900 -12.81582 -12.10604 -11.88367 -11.51261 -11.42133 -11.27966 -11.05705 -10.91860 -10.59256 -10.40515 -10.16511 -9.64717 -9.44057 -9.19058 -8.87258 -8.83092 -8.37643 -8.00965 -7.85873 -5.99377 -4.03063 0.32215 0.74755 1.88345 2.85498 3.31657 3.38516 3.41624 3.99895 4.07039 4.34547 4.44842 4.53921 4.64714 4.71093 4.88657 4.99865 5.25526 5.27384 5.32909 5.38695 5.56254 5.72018 5.80419 5.90473 5.97979 6.13239 6.15197 6.22671 6.41671 6.46800 6.50630 6.66691 6.79209 6.81601 6.88721 7.31824 7.35560 7.79665 7.97952 8.00688 8.18472 8.45309 8.99421 9.60969 11.10307 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.004479 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.538878 B = 6250.092750 C = 7092.855153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.057 0.943 9 C 0.035 3.965 10 C -0.004 4.004 11 N -0.482 5.482 12 C 0.063 3.937 13 C -0.034 4.034 14 C -0.082 4.082 15 C -0.142 4.142 16 C 0.102 3.898 17 F -0.138 7.138 18 C -0.132 4.132 19 C -0.060 4.060 20 C -0.171 4.171 21 C 0.137 3.863 22 N -0.446 5.446 23 C 0.158 3.842 24 C 0.030 3.970 25 H 0.260 0.740 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.163 0.837 36 H 0.062 0.938 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.248 -13.121 -11.102 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.135 4.135 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.016 3.984 10 C -0.133 4.133 11 N -0.205 5.205 12 C -0.065 4.065 13 C -0.035 4.035 14 C -0.103 4.103 15 C -0.161 4.161 16 C 0.082 3.918 17 F -0.116 7.116 18 C -0.135 4.135 19 C -0.086 4.086 20 C -0.191 4.191 21 C -0.035 4.035 22 N -0.153 5.153 23 C 0.036 3.964 24 C -0.099 4.099 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.180 0.820 36 H 0.081 0.919 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.295 -13.104 -10.353 16.750 hybrid contribution 0.111 0.722 -1.141 1.355 sum -1.184 -12.383 -11.494 16.936 Atomic orbital electron populations 1.69977 1.05973 1.26545 1.49920 1.24994 0.94768 0.99019 0.94738 0.86649 0.79943 0.83628 0.78092 1.20683 1.21242 1.19872 1.21021 0.92662 0.90290 1.51107 0.92522 1.20161 0.94225 0.90727 0.93327 1.23997 0.95779 0.97777 0.95740 1.68913 1.26752 1.15039 1.09760 1.21507 0.93432 0.97416 0.94183 1.19640 0.96609 0.93501 0.93760 1.20540 0.97927 0.92960 0.98854 1.20834 0.97512 1.01310 0.96489 1.17209 0.92133 0.87915 0.94583 1.91468 1.67200 1.75134 1.77824 1.18797 1.00938 0.93247 1.00476 1.21308 0.96817 0.95278 0.95169 1.21899 1.00521 0.94832 1.01865 1.23138 0.90321 1.00751 0.89328 1.68286 1.23386 1.08862 1.14790 1.18604 0.93795 0.89473 0.94568 1.23947 1.00065 0.85665 1.00240 0.93005 0.92158 0.92142 0.92834 0.91171 0.92111 0.84434 0.84506 0.84426 0.84380 0.82007 0.91940 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.26 55.43 0.74 -25.10 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.08 8.83 -34.44 -0.30 -14.38 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.03 0.89 3.76 -91.25 -0.34 0.54 16 10 C 0.00 -0.09 7.25 -7.55 -0.05 -0.15 16 11 N -0.48 -10.02 6.32 -246.09 -1.55 -11.57 16 12 C 0.06 1.09 4.71 -4.98 -0.02 1.07 16 13 C -0.03 -0.54 5.47 -104.51 -0.57 -1.11 16 14 C -0.08 -1.08 9.56 -39.96 -0.38 -1.46 16 15 C -0.14 -1.72 9.93 -39.86 -0.40 -2.12 16 16 C 0.10 1.36 7.25 -39.34 -0.29 1.08 16 17 F -0.14 -1.75 16.69 2.25 0.04 -1.71 16 18 C -0.13 -1.93 5.75 -106.75 -0.61 -2.54 16 19 C -0.06 -0.74 9.71 -39.24 -0.38 -1.12 16 20 C -0.17 -1.97 10.03 -39.77 -0.40 -2.37 16 21 C 0.14 1.93 11.14 -17.47 -0.19 1.73 16 22 N -0.45 -7.71 7.76 -10.98 -0.09 -7.80 16 23 C 0.16 2.63 6.58 -84.86 -0.56 2.07 16 24 C 0.03 0.70 5.72 -7.54 -0.04 0.66 16 25 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.06 1.70 8.11 -51.93 -0.42 1.28 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 29 H 0.07 1.06 7.91 -51.93 -0.41 0.65 16 30 H 0.06 1.12 7.03 -51.93 -0.37 0.76 16 31 H 0.14 1.48 8.00 -52.49 -0.42 1.06 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.14 1.36 7.78 -52.48 -0.41 0.95 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.16 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.06 1.51 7.12 -51.93 -0.37 1.15 16 37 H 0.05 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 316.43 15.07 4.77 4.77 Total: -1.00 -30.68 316.43 -10.23 -40.90 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -4.46 Total: 0.72 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -4.65 Total: -16.33 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.90 Total: -44.47 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.68 -10.23 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194119.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.048 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds