Wall clock time and date at job start Tue Mar 31 2020 06:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99849 * 2 1 4 4 H 1.48494 * 109.47662 * 270.00332 * 3 2 1 5 5 H 1.48508 * 109.47115 * 30.00366 * 3 2 1 6 6 H 1.48499 * 109.46914 * 149.99836 * 3 2 1 7 7 C 1.37875 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99451 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00437 * 359.97438 * 7 2 1 10 10 C 1.53503 * 114.17519 * 180.02562 * 9 7 2 11 11 N 1.47482 * 87.93325 * 220.13939 * 10 9 7 12 12 C 1.46897 * 110.99872 * 138.70219 * 11 10 9 13 13 C 1.50702 * 109.46960 * 170.00044 * 12 11 10 14 14 C 1.36145 * 120.09682 * 259.70114 * 13 12 11 15 15 C 1.39241 * 121.10658 * 179.73260 * 14 13 12 16 16 C 1.36428 * 120.83533 * 0.30914 * 15 14 13 17 17 F 1.35096 * 120.22195 * 179.97438 * 16 15 14 18 18 C 1.40614 * 119.55495 * 359.97438 * 16 15 14 19 19 C 1.40695 * 121.38388 * 180.02562 * 18 16 15 20 20 C 1.36604 * 118.16182 * 179.97438 * 19 18 16 21 21 C 1.39306 * 119.93318 * 0.02562 * 20 19 18 22 22 N 1.31096 * 121.75062 * 359.97438 * 21 20 19 23 23 C 1.33704 * 121.31564 * 0.02562 * 22 21 20 24 24 C 1.47479 * 87.83712 * 27.00732 * 11 10 9 25 25 H 0.96994 * 120.00074 * 359.97438 * 1 2 3 26 26 H 1.09000 * 113.25373 * 312.95160 * 9 7 2 27 27 H 1.09000 * 113.48235 * 105.36821 * 10 9 7 28 28 H 1.09006 * 113.52994 * 334.91113 * 10 9 7 29 29 H 1.08995 * 109.47641 * 50.00266 * 12 11 10 30 30 H 1.09002 * 109.47418 * 289.99747 * 12 11 10 31 31 H 1.08000 * 119.44748 * 0.04137 * 14 13 12 32 32 H 1.07999 * 119.58288 * 180.28528 * 15 14 13 33 33 H 1.08003 * 120.91834 * 359.97438 * 19 18 16 34 34 H 1.07999 * 120.03412 * 179.97438 * 20 19 18 35 35 H 1.08004 * 119.12508 * 180.02562 * 21 20 19 36 36 H 1.09001 * 113.47259 * 87.75585 * 24 11 10 37 37 H 1.08998 * 113.48061 * 218.22476 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.1497 -3.7437 -0.0005 11 7 1.2050 -4.3602 -0.9507 12 6 1.9206 -5.0901 -2.0057 13 6 0.9384 -5.9037 -2.8083 14 6 0.8021 -7.2375 -2.5713 15 6 -0.1028 -8.0082 -3.2966 16 6 -0.8752 -7.4474 -4.2714 17 9 -1.7488 -8.2069 -4.9678 18 6 -0.7558 -6.0736 -4.5464 19 6 -1.5335 -5.4555 -5.5427 20 6 -1.3644 -4.1166 -5.7545 21 6 -0.4411 -3.4036 -4.9932 22 7 0.2820 -3.9826 -4.0656 23 6 0.1652 -5.2894 -3.8082 24 6 0.8517 -2.9993 -1.3959 25 1 -0.4850 0.8400 0.0004 26 1 0.4453 -2.5309 0.7328 27 1 2.1891 -4.2510 0.9634 28 1 3.1383 -3.5667 -0.4243 29 1 2.6575 -5.7534 -1.5529 30 1 2.4251 -4.3799 -2.6608 31 1 1.4023 -7.7046 -1.8046 32 1 -0.1942 -9.0633 -3.0850 33 1 -2.2445 -6.0239 -6.1240 34 1 -1.9454 -3.6116 -6.5121 35 1 -0.3183 -2.3454 -5.1714 36 1 1.4936 -2.6227 -2.1923 37 1 -0.2089 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194119.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:19 Heat of formation + Delta-G solvation = 29.027655 kcal Electronic energy + Delta-G solvation = -21931.941947 eV Core-core repulsion = 18588.926034 eV Total energy + Delta-G solvation = -3343.015913 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.118 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.03766 -41.89393 -40.43505 -38.10010 -35.06725 -34.36218 -32.34862 -31.67979 -29.77736 -27.22527 -26.45575 -25.36173 -24.84251 -24.18749 -21.78931 -20.40651 -19.61496 -18.78330 -18.39392 -18.20806 -16.89260 -16.76139 -16.60490 -16.20005 -16.05862 -15.76897 -15.40125 -15.08131 -14.92824 -14.46506 -14.12648 -13.87866 -13.79673 -13.48015 -13.17511 -12.97147 -12.75424 -12.52518 -12.37437 -12.27222 -11.89756 -11.53736 -11.52129 -11.11314 -10.82093 -10.55563 -10.40344 -9.88965 -9.64592 -9.07484 -8.12057 -6.23181 -0.70758 -0.27517 0.83917 1.43564 1.43882 1.54803 1.84536 2.44403 2.92514 3.02541 3.17244 3.31564 3.48458 3.59652 3.67785 3.77074 3.92381 3.96679 4.27337 4.33899 4.41128 4.42163 4.50739 4.67960 4.73452 4.84468 4.88949 4.93935 4.96452 5.00631 5.06037 5.13878 5.33349 5.37069 5.46341 5.63442 5.66067 5.80943 5.88220 6.33006 6.44394 6.85700 6.94490 7.44706 8.98007 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.023454 B = 0.004479 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.538878 B = 6250.092750 C = 7092.855153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.012 3.988 11 N -0.481 5.481 12 C 0.069 3.931 13 C -0.070 4.070 14 C -0.067 4.067 15 C -0.137 4.137 16 C 0.100 3.900 17 F -0.133 7.133 18 C -0.150 4.150 19 C -0.062 4.062 20 C -0.163 4.163 21 C 0.123 3.877 22 N -0.493 5.493 23 C 0.133 3.867 24 C 0.056 3.944 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.044 0.956 31 H 0.165 0.835 32 H 0.172 0.828 33 H 0.165 0.835 34 H 0.177 0.823 35 H 0.173 0.827 36 H 0.051 0.949 37 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 -14.573 -11.949 18.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.116 4.116 11 N -0.203 5.203 12 C -0.059 4.059 13 C -0.071 4.071 14 C -0.087 4.087 15 C -0.156 4.156 16 C 0.080 3.920 17 F -0.111 7.111 18 C -0.153 4.153 19 C -0.088 4.088 20 C -0.182 4.182 21 C -0.049 4.049 22 N -0.201 5.201 23 C 0.011 3.989 24 C -0.073 4.073 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.183 0.817 32 H 0.189 0.811 33 H 0.182 0.818 34 H 0.194 0.806 35 H 0.190 0.810 36 H 0.070 0.930 37 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.820 -14.575 -11.203 18.401 hybrid contribution -0.092 1.090 -0.930 1.436 sum -0.912 -13.485 -12.133 18.162 Atomic orbital electron populations 1.70117 1.07635 1.27431 1.51093 1.25827 0.95555 1.02698 0.94338 0.85565 0.78804 0.79029 0.78317 1.20028 1.20970 1.18826 1.21357 0.92960 0.91405 1.50821 0.92214 1.20134 0.94534 0.92361 0.93605 1.23811 0.95374 0.95572 0.96886 1.68809 1.27383 1.13415 1.10719 1.21445 0.94074 0.97250 0.93092 1.19669 0.97830 0.94730 0.94899 1.20862 0.97428 0.91796 0.98622 1.21177 0.96258 1.02830 0.95326 1.17335 0.92281 0.87583 0.94841 1.91481 1.67039 1.74837 1.77755 1.19029 1.01152 0.94005 1.01118 1.21693 0.96667 0.95789 0.94660 1.22210 0.99622 0.94663 1.01723 1.23538 0.90596 1.01597 0.89160 1.68219 1.25354 1.09852 1.16666 1.18839 0.94899 0.89633 0.95541 1.23470 0.97678 0.87619 0.98543 0.92986 0.95795 0.90453 0.91901 0.88394 0.93818 0.81709 0.81071 0.81775 0.80601 0.81006 0.93028 0.95894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.26 21.45 0.28 -55.27 16 2 C 0.01 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.53 -29.57 8.83 25.60 0.23 -29.34 16 8 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 9 C 0.01 0.68 3.76 -11.20 -0.04 0.64 16 10 C 0.01 0.51 7.25 83.57 0.61 1.12 16 11 N -0.48 -20.17 6.32 -932.48 -5.89 -26.06 16 12 C 0.07 2.38 4.71 85.56 0.40 2.79 16 13 C -0.07 -2.21 5.47 -19.79 -0.11 -2.32 16 14 C -0.07 -1.60 9.56 22.02 0.21 -1.39 16 15 C -0.14 -2.92 9.93 22.09 0.22 -2.70 16 16 C 0.10 2.47 7.25 22.43 0.16 2.64 16 17 F -0.13 -3.03 16.69 44.97 0.75 -2.28 16 18 C -0.15 -4.27 5.75 -21.24 -0.12 -4.39 16 19 C -0.06 -1.44 9.71 22.49 0.22 -1.22 16 20 C -0.16 -3.55 10.03 22.14 0.22 -3.33 16 21 C 0.12 3.52 11.14 85.06 0.95 4.47 16 22 N -0.49 -17.69 7.76 -188.66 -1.46 -19.16 16 23 C 0.13 4.46 6.58 40.28 0.27 4.72 16 24 C 0.06 2.78 5.72 83.58 0.48 3.26 16 25 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 26 H 0.02 1.42 8.11 -2.39 -0.02 1.40 16 27 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.06 2.55 7.87 -2.38 -0.02 2.53 16 29 H 0.10 2.76 7.91 -2.39 -0.02 2.74 16 30 H 0.04 1.65 7.03 -2.39 -0.02 1.63 16 31 H 0.17 2.94 8.00 -2.91 -0.02 2.91 16 32 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.16 2.81 7.78 -2.91 -0.02 2.78 16 34 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.17 4.24 8.06 -2.91 -0.02 4.21 16 36 H 0.05 2.63 7.12 -2.39 -0.02 2.61 16 37 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -69.00 316.43 0.94 -68.06 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.08 Total: 12.60 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 4.15 Total: -23.76 kcal Atomic # 7 Polarization: -93.41 SS G_CDS: -7.07 Total: -100.48 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.75 Total: -2.28 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.00 0.94 -68.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194119.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.087 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds