Wall clock time and date at job start Tue Mar 31 2020 06:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38284 * 120.38052 * 2 1 4 4 N 1.31867 * 120.93175 * 180.02562 * 3 2 1 5 5 C 1.31808 * 121.79960 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.66781 * 179.97438 * 5 4 3 7 7 C 1.38909 * 120.65819 * 359.97438 * 5 4 3 8 8 N 1.39727 * 120.49169 * 179.97438 * 7 5 4 9 9 C 1.39813 * 120.00083 * 187.83358 * 8 7 5 10 10 C 1.39430 * 119.91261 * 41.74817 * 9 8 7 11 11 C 1.38360 * 120.46379 * 179.97438 * 10 9 8 12 12 C 1.38007 * 120.28903 * 0.02562 * 11 10 9 13 13 F 1.35098 * 120.08933 * 179.97438 * 12 11 10 14 14 C 1.41019 * 119.82646 * 359.97438 * 12 11 10 15 15 C 1.41291 * 120.22797 * 179.72304 * 14 12 11 16 16 H 1.07997 * 120.00523 * 330.66756 * 15 14 12 17 17 C 1.39913 * 119.99831 * 150.66372 * 15 14 12 18 18 N 1.30862 * 120.00233 * 350.85518 * 17 15 14 19 19 Si 1.86804 * 120.00178 * 170.85493 * 17 15 14 20 20 H 1.48495 * 109.47060 * 59.99729 * 19 17 15 21 21 H 1.48495 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46988 * 300.00299 * 19 17 15 23 23 C 1.38182 * 119.91747 * 221.77273 * 9 8 7 24 24 C 1.38490 * 120.37863 * 180.28154 * 2 1 3 25 25 H 1.08992 * 109.47532 * 90.00041 * 1 2 3 26 26 H 1.09004 * 109.47123 * 210.00372 * 1 2 3 27 27 H 1.09004 * 109.47202 * 329.99386 * 1 2 3 28 28 H 1.07998 * 119.53013 * 0.02562 * 3 2 1 29 29 H 1.08994 * 109.47577 * 269.98144 * 6 5 4 30 30 H 1.09000 * 109.46953 * 29.98832 * 6 5 4 31 31 H 1.09006 * 109.46643 * 149.98005 * 6 5 4 32 32 H 0.97004 * 120.00422 * 7.83779 * 8 7 5 33 33 H 1.08001 * 119.77101 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.85568 * 180.02562 * 11 10 9 35 35 H 0.96997 * 120.00156 * 179.97438 * 18 17 15 36 36 H 1.07995 * 120.14823 * 0.02562 * 23 9 8 37 37 H 1.08000 * 120.82396 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2063 1.1930 0.0000 4 7 3.5249 1.2056 -0.0005 5 6 4.2302 0.0921 -0.0015 6 6 5.7356 0.1627 -0.0027 7 6 3.5998 -1.1456 -0.0016 8 7 4.3509 -2.3239 -0.0032 9 6 3.7150 -3.5580 -0.1683 10 6 2.6939 -3.6939 -1.1079 11 6 2.0573 -4.9101 -1.2811 12 6 2.4266 -6.0032 -0.5238 13 9 1.8020 -7.1886 -0.6959 14 6 3.4579 -5.8794 0.4300 15 6 3.8389 -6.9915 1.2140 16 1 3.1145 -7.7548 1.4567 17 6 5.1548 -7.1038 1.6759 18 7 6.0741 -6.2814 1.2389 19 14 5.5995 -8.4277 2.9164 20 1 5.3061 -9.7645 2.3402 21 1 7.0452 -8.3351 3.2425 22 1 4.8003 -8.2357 4.1532 23 6 4.0998 -4.6398 0.6005 24 6 2.2073 -1.1947 -0.0059 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6649 2.1274 0.0004 29 1 6.0978 0.1798 -1.0305 30 1 6.0572 1.0686 0.5111 31 1 6.1405 -0.7094 0.5108 32 1 5.3135 -2.2856 0.1102 33 1 2.3983 -2.8442 -1.7054 34 1 1.2679 -5.0045 -2.0120 35 1 6.9863 -6.3591 1.5594 36 1 4.8902 -4.5340 1.3288 37 1 1.6871 -2.1412 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203670077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:01 Heat of formation + Delta-G solvation = -0.821199 kcal Electronic energy + Delta-G solvation = -21737.544190 eV Core-core repulsion = 18393.233934 eV Total energy + Delta-G solvation = -3344.310256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -47.32108 -40.28638 -37.98476 -35.37593 -34.02507 -33.45037 -30.69149 -29.99363 -29.21887 -27.43549 -25.53981 -25.28481 -22.82155 -21.87742 -20.82024 -20.29261 -17.70500 -17.25175 -16.27463 -15.96007 -15.69972 -15.40706 -14.79443 -14.66976 -14.30742 -14.10163 -13.23660 -13.21159 -13.04119 -12.91031 -12.75584 -12.43410 -12.27144 -12.02384 -11.92501 -11.76706 -11.63038 -11.44683 -11.31322 -11.12192 -10.83167 -10.41993 -10.19775 -9.73242 -9.41806 -9.20052 -8.83683 -7.93361 -7.70108 -6.99636 -6.57637 -4.61379 1.44491 1.69233 2.51808 2.63163 2.97740 3.01124 3.05160 3.79891 3.80861 4.09199 4.40435 4.65709 5.01470 5.06770 5.25299 5.26958 5.40082 5.60166 5.67108 5.74719 5.77283 5.78793 5.88876 5.96774 6.00469 6.22163 6.28028 6.40736 6.60344 6.68767 6.72794 6.89417 7.00818 7.08400 7.34422 7.46676 7.64390 7.79912 8.03181 8.13835 8.34169 8.41136 8.58707 8.65303 10.00432 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.004818 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.602885 B = 5809.892952 C = 6788.562515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C 0.030 3.970 4 N -0.449 5.449 5 C 0.041 3.959 6 C -0.093 4.093 7 C 0.178 3.822 8 N -0.669 5.669 9 C 0.152 3.848 10 C -0.239 4.239 11 C -0.107 4.107 12 C -0.033 4.033 13 F -0.162 7.162 14 C 0.102 3.898 15 C -0.450 4.450 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.797 5.797 19 Si 0.918 3.082 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.161 4.161 24 C -0.148 4.148 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.145 0.855 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.406 0.594 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.284 0.716 36 H 0.133 0.867 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 8.904 -0.573 9.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.129 4.129 4 N -0.157 5.157 5 C -0.102 4.102 6 C -0.151 4.151 7 C 0.072 3.928 8 N -0.290 5.290 9 C 0.059 3.941 10 C -0.260 4.260 11 C -0.126 4.126 12 C -0.054 4.054 13 F -0.141 7.141 14 C 0.098 3.902 15 C -0.479 4.479 16 H 0.102 0.898 17 C -0.144 4.144 18 N -0.422 5.422 19 Si 0.742 3.258 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.183 4.183 24 C -0.178 4.178 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.163 0.837 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.244 0.756 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.218 9.575 -0.571 9.845 hybrid contribution 0.119 -1.604 0.435 1.666 sum -2.099 7.971 -0.137 8.244 Atomic orbital electron populations 1.20695 0.90725 1.02787 1.02315 1.20678 0.97013 0.93496 0.99164 1.22179 0.89546 0.96975 1.04241 1.67241 1.08290 1.29882 1.10332 1.20663 0.96462 0.86888 1.06178 1.20494 0.89417 1.02710 1.02457 1.18697 0.91889 0.87167 0.95087 1.42248 1.08738 1.01871 1.76182 1.17574 0.95922 0.84347 0.96295 1.20114 1.04317 0.97185 1.04409 1.20335 1.00424 0.92196 0.99669 1.17923 1.02614 0.81152 1.03680 1.91280 1.81845 1.45847 1.95135 1.17412 0.89575 0.93184 0.90050 1.19494 0.95606 1.05783 1.27038 0.89827 1.25910 0.95995 0.96944 0.95505 1.69751 1.02989 1.33852 1.35651 0.86195 0.77932 0.80984 0.80724 1.18763 1.20152 1.18684 1.21070 1.05289 0.90485 1.01422 1.21519 0.92229 0.99502 1.04525 0.91114 0.91340 0.91506 0.83718 0.91075 0.90752 0.91579 0.75634 0.87814 0.87657 0.90552 0.84940 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.03 36.00 0.36 -0.82 16 2 C -0.10 -1.45 5.89 -104.51 -0.62 -2.07 16 3 C 0.03 0.44 10.85 -17.52 -0.19 0.25 16 4 N -0.45 -7.27 10.27 -9.30 -0.10 -7.36 16 5 C 0.04 0.66 6.80 -82.35 -0.56 0.10 16 6 C -0.09 -1.21 9.80 36.01 0.35 -0.86 16 7 C 0.18 3.07 6.41 -83.60 -0.54 2.54 16 8 N -0.67 -12.13 5.38 -8.34 -0.04 -12.17 16 9 C 0.15 3.22 5.88 -83.79 -0.49 2.73 16 10 C -0.24 -4.91 7.40 -39.09 -0.29 -5.20 16 11 C -0.11 -2.28 10.00 -39.62 -0.40 -2.68 16 12 C -0.03 -0.81 7.31 -38.61 -0.28 -1.09 16 13 F -0.16 -3.95 16.76 2.25 0.04 -3.91 16 14 C 0.10 2.59 5.55 -106.78 -0.59 2.00 16 15 C -0.45 -11.55 8.75 -37.80 -0.33 -11.88 16 16 H 0.08 2.12 7.77 -52.49 -0.41 1.71 16 17 C 0.07 1.77 5.28 -17.34 -0.09 1.68 16 18 N -0.80 -19.24 10.81 55.55 0.60 -18.64 16 19 Si 0.92 18.02 29.57 -169.99 -5.03 13.00 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 21 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 22 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 23 C -0.16 -3.82 8.57 -38.70 -0.33 -4.15 16 24 C -0.15 -2.49 7.82 -39.08 -0.31 -2.80 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 27 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 28 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.80 6.45 -51.93 -0.33 0.47 16 32 H 0.41 6.72 6.81 -40.82 -0.28 6.44 16 33 H 0.10 1.98 6.64 -52.49 -0.35 1.63 16 34 H 0.11 1.99 8.06 -52.49 -0.42 1.56 16 35 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 36 H 0.13 3.24 6.21 -52.49 -0.33 2.92 16 37 H 0.15 2.64 5.49 -52.49 -0.29 2.35 16 LS Contribution 314.87 15.07 4.74 4.74 Total: -1.00 -26.84 314.87 -8.16 -34.99 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -4.07 Total: 11.58 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -4.30 Total: -22.24 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.46 Total: -38.17 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.04 Total: -3.91 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.84 -8.16 -34.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203670077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.172 kcal (2) G-P(sol) polarization free energy of solvation -26.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds