Wall clock time and date at job start Tue Mar 31 2020 06:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38284 * 120.38052 * 2 1 4 4 N 1.31867 * 120.93175 * 180.02562 * 3 2 1 5 5 C 1.31808 * 121.79960 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.66781 * 179.97438 * 5 4 3 7 7 C 1.38909 * 120.65819 * 359.97438 * 5 4 3 8 8 N 1.39727 * 120.49169 * 179.97438 * 7 5 4 9 9 C 1.39813 * 120.00083 * 187.83358 * 8 7 5 10 10 C 1.39430 * 119.91261 * 41.74817 * 9 8 7 11 11 C 1.38360 * 120.46379 * 179.97438 * 10 9 8 12 12 C 1.38007 * 120.28903 * 0.02562 * 11 10 9 13 13 F 1.35098 * 120.08933 * 179.97438 * 12 11 10 14 14 C 1.41019 * 119.82646 * 359.97438 * 12 11 10 15 15 C 1.41291 * 120.22797 * 179.72304 * 14 12 11 16 16 H 1.07997 * 120.00523 * 330.66756 * 15 14 12 17 17 C 1.39913 * 119.99831 * 150.66372 * 15 14 12 18 18 N 1.30862 * 120.00233 * 350.85518 * 17 15 14 19 19 Si 1.86804 * 120.00178 * 170.85493 * 17 15 14 20 20 H 1.48495 * 109.47060 * 59.99729 * 19 17 15 21 21 H 1.48495 * 109.47234 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46988 * 300.00299 * 19 17 15 23 23 C 1.38182 * 119.91747 * 221.77273 * 9 8 7 24 24 C 1.38490 * 120.37863 * 180.28154 * 2 1 3 25 25 H 1.08992 * 109.47532 * 90.00041 * 1 2 3 26 26 H 1.09004 * 109.47123 * 210.00372 * 1 2 3 27 27 H 1.09004 * 109.47202 * 329.99386 * 1 2 3 28 28 H 1.07998 * 119.53013 * 0.02562 * 3 2 1 29 29 H 1.08994 * 109.47577 * 269.98144 * 6 5 4 30 30 H 1.09000 * 109.46953 * 29.98832 * 6 5 4 31 31 H 1.09006 * 109.46643 * 149.98005 * 6 5 4 32 32 H 0.97004 * 120.00422 * 7.83779 * 8 7 5 33 33 H 1.08001 * 119.77101 * 0.02562 * 10 9 8 34 34 H 1.07999 * 119.85568 * 180.02562 * 11 10 9 35 35 H 0.96997 * 120.00156 * 179.97438 * 18 17 15 36 36 H 1.07995 * 120.14823 * 0.02562 * 23 9 8 37 37 H 1.08000 * 120.82396 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2063 1.1930 0.0000 4 7 3.5249 1.2056 -0.0005 5 6 4.2302 0.0921 -0.0015 6 6 5.7356 0.1627 -0.0027 7 6 3.5998 -1.1456 -0.0016 8 7 4.3509 -2.3239 -0.0032 9 6 3.7150 -3.5580 -0.1683 10 6 2.6939 -3.6939 -1.1079 11 6 2.0573 -4.9101 -1.2811 12 6 2.4266 -6.0032 -0.5238 13 9 1.8020 -7.1886 -0.6959 14 6 3.4579 -5.8794 0.4300 15 6 3.8389 -6.9915 1.2140 16 1 3.1145 -7.7548 1.4567 17 6 5.1548 -7.1038 1.6759 18 7 6.0741 -6.2814 1.2389 19 14 5.5995 -8.4277 2.9164 20 1 5.3061 -9.7645 2.3402 21 1 7.0452 -8.3351 3.2425 22 1 4.8003 -8.2357 4.1532 23 6 4.0998 -4.6398 0.6005 24 6 2.2073 -1.1947 -0.0059 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5139 28 1 1.6649 2.1274 0.0004 29 1 6.0978 0.1798 -1.0305 30 1 6.0572 1.0686 0.5111 31 1 6.1405 -0.7094 0.5108 32 1 5.3135 -2.2856 0.1102 33 1 2.3983 -2.8442 -1.7054 34 1 1.2679 -5.0045 -2.0120 35 1 6.9863 -6.3591 1.5594 36 1 4.8902 -4.5340 1.3288 37 1 1.6871 -2.1412 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203670077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:00 Heat of formation + Delta-G solvation = -13.817811 kcal Electronic energy + Delta-G solvation = -21738.107766 eV Core-core repulsion = 18393.233934 eV Total energy + Delta-G solvation = -3344.873832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.19439 -41.56155 -39.60199 -36.90417 -35.49646 -34.84904 -32.04667 -31.75399 -30.36449 -28.98863 -27.34336 -26.31929 -24.19585 -23.53228 -22.23343 -21.83755 -19.40375 -18.66349 -18.03825 -17.47339 -17.15030 -16.82159 -16.26735 -16.23465 -15.97770 -15.60851 -14.80991 -14.48010 -14.27670 -14.19505 -14.12278 -13.90756 -13.55667 -13.40066 -13.39638 -12.99990 -12.96086 -12.85985 -12.73309 -12.54452 -12.46896 -12.09119 -11.80874 -11.47255 -11.16714 -10.41938 -10.08504 -9.53176 -9.42091 -8.74318 -8.12167 -6.50602 0.22522 0.36470 0.81262 0.90656 1.36646 1.47362 1.48049 2.17219 2.37551 2.60416 2.91360 3.42587 3.55801 3.87009 3.91779 4.00161 4.20961 4.23571 4.30431 4.51638 4.56858 4.70216 4.75712 4.80514 4.87666 4.93069 4.99585 5.10397 5.14086 5.16900 5.26977 5.33064 5.46675 5.59397 5.69714 5.80726 5.95645 5.98602 6.28620 6.61985 6.67461 6.74819 6.86437 7.14913 8.24907 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.004818 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.602885 B = 5809.892952 C = 6788.562515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.034 3.966 4 N -0.465 5.465 5 C 0.037 3.963 6 C -0.093 4.093 7 C 0.155 3.845 8 N -0.669 5.669 9 C 0.166 3.834 10 C -0.227 4.227 11 C -0.099 4.099 12 C -0.067 4.067 13 F -0.169 7.169 14 C 0.076 3.924 15 C -0.491 4.491 16 H 0.072 0.928 17 C 0.039 3.961 18 N -0.820 5.820 19 Si 0.984 3.016 20 H -0.264 1.264 21 H -0.262 1.262 22 H -0.260 1.260 23 C -0.179 4.179 24 C -0.164 4.164 25 H 0.085 0.915 26 H 0.064 0.936 27 H 0.091 0.909 28 H 0.178 0.822 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.411 0.589 33 H 0.124 0.876 34 H 0.134 0.866 35 H 0.292 0.708 36 H 0.120 0.880 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.271 10.798 -0.729 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.101 4.101 3 C -0.126 4.126 4 N -0.173 5.173 5 C -0.105 4.105 6 C -0.150 4.150 7 C 0.050 3.950 8 N -0.293 5.293 9 C 0.071 3.929 10 C -0.249 4.249 11 C -0.118 4.118 12 C -0.087 4.087 13 F -0.149 7.149 14 C 0.072 3.928 15 C -0.520 4.520 16 H 0.090 0.910 17 C -0.177 4.177 18 N -0.446 5.446 19 Si 0.805 3.195 20 H -0.188 1.188 21 H -0.186 1.186 22 H -0.184 1.184 23 C -0.201 4.201 24 C -0.194 4.194 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.195 0.805 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.250 0.750 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.653 11.519 -0.739 11.844 hybrid contribution 0.153 -1.952 0.413 2.001 sum -2.499 9.567 -0.326 9.893 Atomic orbital electron populations 1.20777 0.88115 1.03891 1.03560 1.21031 0.98882 0.92524 0.97622 1.22801 0.89264 0.98330 1.02167 1.67351 1.09235 1.29740 1.10964 1.21036 0.97819 0.86391 1.05271 1.20561 0.87686 1.03426 1.03340 1.18869 0.92211 0.87104 0.96767 1.42108 1.09011 1.01203 1.76948 1.17591 0.95355 0.84872 0.95056 1.20342 1.03439 0.97389 1.03684 1.20626 1.00577 0.91427 0.99170 1.18206 1.03575 0.81896 1.05042 1.91242 1.81965 1.46390 1.95264 1.17745 0.90489 0.93893 0.90682 1.19656 0.96650 1.06362 1.29316 0.90996 1.26666 0.95241 0.99018 0.96759 1.69787 1.03466 1.34993 1.36330 0.85204 0.78244 0.77938 0.78121 1.18807 1.18588 1.18433 1.20968 1.05746 0.91071 1.02353 1.21602 0.92291 1.00039 1.05459 0.89643 0.91657 0.89050 0.80464 0.90037 0.89751 0.91130 0.74998 0.85777 0.84831 0.89749 0.86268 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 10.03 71.23 0.71 -1.26 16 2 C -0.10 -2.57 5.89 -19.80 -0.12 -2.69 16 3 C 0.03 0.87 10.85 84.70 0.92 1.79 16 4 N -0.46 -13.90 10.27 -183.34 -1.88 -15.79 16 5 C 0.04 1.14 6.80 42.72 0.29 1.43 16 6 C -0.09 -2.27 9.80 71.24 0.70 -1.57 16 7 C 0.15 5.18 6.41 38.31 0.25 5.43 16 8 N -0.67 -24.09 5.38 -180.31 -0.97 -25.06 16 9 C 0.17 7.08 5.88 38.14 0.22 7.30 16 10 C -0.23 -9.16 7.40 22.59 0.17 -8.99 16 11 C -0.10 -4.18 10.00 22.24 0.22 -3.96 16 12 C -0.07 -3.32 7.31 22.90 0.17 -3.16 16 13 F -0.17 -8.51 16.76 44.97 0.75 -7.76 16 14 C 0.08 4.01 5.55 -21.26 -0.12 3.89 16 15 C -0.49 -26.33 8.75 23.43 0.20 -26.12 16 16 H 0.07 3.86 7.77 -2.91 -0.02 3.84 16 17 C 0.04 1.89 5.28 85.24 0.45 2.34 16 18 N -0.82 -40.53 10.81 21.82 0.24 -40.30 16 19 Si 0.98 37.46 29.57 68.60 2.03 39.49 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 C -0.18 -8.80 8.57 22.84 0.20 -8.60 16 24 C -0.16 -5.30 7.82 22.59 0.18 -5.12 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 27 H 0.09 1.26 8.09 -2.38 -0.02 1.24 16 28 H 0.18 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 31 H 0.07 1.64 6.45 -2.38 -0.02 1.63 16 32 H 0.41 13.59 6.81 -92.71 -0.63 12.96 16 33 H 0.12 4.50 6.64 -2.91 -0.02 4.48 16 34 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 35 H 0.29 12.98 8.30 -92.71 -0.77 12.21 16 36 H 0.12 6.09 6.21 -2.91 -0.02 6.07 16 37 H 0.14 4.69 5.49 -2.91 -0.02 4.68 16 Total: -1.00 -59.12 314.87 5.09 -54.03 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.49 Total: 34.67 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 4.44 Total: -39.29 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -2.62 Total: -81.15 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 0.75 Total: -7.76 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Total: -59.12 5.09 -54.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203670077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.211 kcal (2) G-P(sol) polarization free energy of solvation -59.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds