Wall clock time and date at job start Tue Mar 31 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 C 1.53004 * 109.46594 * 119.99420 * 2 1 3 5 5 C 1.53000 * 115.55464 * 273.43298 * 4 2 1 6 6 C 1.53083 * 117.53180 * 127.71725 * 4 2 1 7 7 C 1.53000 * 59.98256 * 252.52974 * 6 4 2 8 8 H 1.08996 * 117.49971 * 252.49509 * 7 6 4 9 9 C 1.50697 * 117.49841 * 107.50231 * 7 6 4 10 10 O 1.20832 * 119.99855 * 329.67265 * 9 7 6 11 11 O 1.34228 * 120.00501 * 149.67084 * 9 7 6 12 12 C 1.45195 * 117.00257 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47198 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47567 * 179.97438 * 13 12 11 15 15 S 1.81003 * 109.47469 * 179.97438 * 14 13 12 16 16 C 1.76202 * 99.99911 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00122 * 0.02562 * 16 15 14 18 18 C 1.38792 * 119.99627 * 180.02562 * 16 15 14 19 19 N 1.31635 * 120.00269 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00476 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46855 * 89.99613 * 20 18 16 22 22 H 1.48492 * 109.47423 * 210.00065 * 20 18 16 23 23 H 1.48499 * 109.46626 * 330.00430 * 20 18 16 24 24 H 1.08999 * 109.46655 * 66.45455 * 1 2 3 25 25 H 1.08998 * 109.47364 * 186.45003 * 1 2 3 26 26 H 1.08994 * 109.47541 * 306.45516 * 1 2 3 27 27 H 1.08997 * 109.47377 * 239.98918 * 2 1 3 28 28 H 1.08999 * 109.47349 * 172.52881 * 3 2 1 29 29 H 1.09002 * 109.46787 * 292.52404 * 3 2 1 30 30 H 1.08997 * 109.47524 * 52.52653 * 3 2 1 31 31 H 1.09002 * 109.47494 * 205.67395 * 5 4 2 32 32 H 1.09007 * 109.46605 * 325.67195 * 5 4 2 33 33 H 1.09001 * 109.47087 * 85.66748 * 5 4 2 34 34 H 1.08997 * 117.49114 * 145.04080 * 6 4 2 35 35 H 1.08994 * 117.51104 * 0.02562 * 6 4 2 36 36 H 1.08997 * 109.47441 * 59.99701 * 12 11 9 37 37 H 1.09001 * 109.47048 * 299.99779 * 12 11 9 38 38 H 1.09001 * 109.46768 * 299.99739 * 13 12 11 39 39 H 1.08997 * 109.47341 * 59.99428 * 13 12 11 40 40 H 1.09001 * 109.46997 * 299.99762 * 14 13 12 41 41 H 1.08997 * 109.47123 * 59.99458 * 14 13 12 42 42 H 0.96998 * 120.00709 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 2.1819 0.1473 2.5010 6 6 3.0587 -1.8463 1.0507 7 6 1.6183 -2.1788 1.4452 8 1 1.4417 -2.5190 2.4656 9 6 0.7330 -2.7946 0.3925 10 8 0.9074 -2.5302 -0.7735 11 8 -0.2492 -3.6367 0.7502 12 6 -1.0621 -4.1924 -0.3168 13 6 -2.1212 -5.1214 0.2800 14 6 -2.9783 -5.7066 -0.8442 15 16 -4.2307 -6.8062 -0.1382 16 6 -5.0494 -7.3226 -1.6106 17 1 -4.7196 -6.9525 -2.5700 18 6 -6.1182 -8.2050 -1.5372 19 7 -6.7303 -8.5905 -2.6370 20 14 -6.6884 -8.8457 0.1224 21 1 -7.7232 -7.9355 0.6754 22 1 -7.2621 -10.2054 -0.0425 23 1 -5.5330 -8.9053 1.0533 24 1 -0.3632 0.4105 -0.9421 25 1 -0.3634 -1.0211 0.1154 26 1 -0.3634 0.6106 0.8265 27 1 1.8934 -0.5140 -0.8898 28 1 3.1218 1.4454 0.1336 29 1 1.7900 1.9162 -0.9493 30 1 1.5717 1.9935 0.8155 31 1 2.9357 -0.2846 3.1594 32 1 2.4853 1.1537 2.2123 33 1 1.2260 0.1916 3.0228 34 1 3.8296 -1.9672 1.8117 35 1 3.3661 -2.0727 0.0298 36 1 -0.4279 -4.7559 -1.0010 37 1 -1.5526 -3.3837 -0.8587 38 1 -1.6311 -5.9301 0.8222 39 1 -2.7554 -4.5575 0.9640 40 1 -3.4684 -4.8976 -1.3860 41 1 -2.3444 -6.2704 -1.5285 42 1 -7.4770 -9.2074 -2.5858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805533088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:44 Heat of formation + Delta-G solvation = -89.243324 kcal Electronic energy + Delta-G solvation = -20205.034125 eV Core-core repulsion = 17083.501103 eV Total energy + Delta-G solvation = -3121.533022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.139 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.11714 -38.84188 -36.42696 -33.87435 -33.53334 -32.46251 -29.28299 -27.18884 -27.06093 -25.69248 -24.45669 -22.89360 -21.45522 -20.71631 -18.89802 -17.89113 -17.38529 -16.75395 -16.47132 -15.54530 -15.02553 -14.85922 -14.71681 -14.35398 -13.97174 -13.65846 -13.28395 -13.06225 -12.83598 -12.77520 -12.58509 -12.50853 -12.21188 -11.94298 -11.59831 -11.53229 -11.43948 -11.18234 -11.11136 -11.08226 -10.97038 -10.52170 -10.42988 -10.33811 -10.22334 -10.04805 -9.82540 -9.03126 -8.62180 -6.98919 -6.30578 -4.04011 1.93616 2.45942 3.00694 3.28579 3.41291 3.43479 3.54654 4.16515 4.28915 4.31510 4.37265 4.54046 4.71154 4.82384 4.91925 5.01095 5.03768 5.08484 5.14731 5.15224 5.28389 5.35795 5.38463 5.38753 5.44471 5.58089 5.61169 5.64038 5.67287 5.69982 5.74029 5.77481 5.97126 6.03810 6.08804 6.17660 6.32773 6.42710 6.58220 7.72896 7.93039 8.42297 9.14767 10.78826 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.039483 B = 0.002580 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.995873 B =10851.936348 C =11051.429852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 C -0.144 4.144 4 C -0.082 4.082 5 C -0.123 4.123 6 C -0.138 4.138 7 C -0.168 4.168 8 H 0.131 0.869 9 C 0.493 3.507 10 O -0.507 6.507 11 O -0.354 6.354 12 C 0.073 3.927 13 C -0.101 4.101 14 C -0.084 4.084 15 S -0.206 6.206 16 C -0.504 4.504 17 H 0.089 0.911 18 C 0.092 3.908 19 N -0.881 5.881 20 Si 0.862 3.138 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.237 1.237 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.765 18.015 10.101 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.083 4.083 3 C -0.201 4.201 4 C -0.082 4.082 5 C -0.180 4.180 6 C -0.175 4.175 7 C -0.187 4.187 8 H 0.149 0.851 9 C 0.338 3.662 10 O -0.396 6.396 11 O -0.270 6.270 12 C -0.002 4.002 13 C -0.140 4.140 14 C -0.232 4.232 15 S 0.021 5.979 16 C -0.652 4.652 17 H 0.107 0.893 18 C -0.116 4.116 19 N -0.517 5.517 20 Si 0.686 3.314 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.161 1.161 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.411 17.662 10.724 28.351 hybrid contribution -0.403 -0.315 -0.902 1.037 sum 19.009 17.347 9.822 27.545 Atomic orbital electron populations 1.21914 0.94845 1.01807 1.01634 1.20768 0.95943 0.95692 0.95932 1.21891 1.00908 0.95543 1.01779 1.21717 1.00986 0.87426 0.98109 1.21528 1.02241 0.99701 0.94532 1.23372 0.89704 1.00578 1.03812 1.21936 0.97253 1.00393 0.99131 0.85087 1.22335 0.79082 0.76077 0.88755 1.90661 1.69640 1.59054 1.20276 1.86454 1.42624 1.56639 1.41325 1.23215 0.91866 0.97004 0.88078 1.21327 0.95596 0.98483 0.98546 1.22943 0.99405 1.01343 0.99524 1.84166 1.38788 1.57303 1.17609 1.22118 1.18871 1.32660 0.91534 0.89305 1.24794 0.94933 0.94756 0.97167 1.69935 1.21779 1.32669 1.27341 0.86670 0.81189 0.79020 0.84476 1.19319 1.20037 1.16134 0.92437 0.92938 0.92903 0.89318 0.92481 0.92580 0.92393 0.92084 0.90699 0.91724 0.87351 0.87510 0.91024 0.91071 0.90268 0.90294 0.91031 0.90987 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.60 37.16 0.32 -1.16 16 2 C -0.07 -0.59 2.22 -90.62 -0.20 -0.79 16 3 C -0.14 -1.00 7.90 37.16 0.29 -0.70 16 4 C -0.08 -0.65 1.92 -154.46 -0.30 -0.95 16 5 C -0.12 -0.72 9.51 37.16 0.35 -0.37 16 6 C -0.14 -1.05 9.36 -26.69 -0.25 -1.30 16 7 C -0.17 -1.58 5.91 -91.77 -0.54 -2.12 16 8 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 9 C 0.49 6.29 5.26 36.00 0.19 6.48 16 10 O -0.51 -7.38 13.02 -18.75 -0.24 -7.63 16 11 O -0.35 -4.88 10.22 -39.25 -0.40 -5.28 16 12 C 0.07 1.04 5.47 37.16 0.20 1.24 16 13 C -0.10 -1.58 5.60 -26.73 -0.15 -1.73 16 14 C -0.08 -1.61 5.67 37.16 0.21 -1.40 16 15 S -0.21 -5.01 19.41 -107.50 -2.09 -7.09 16 16 C -0.50 -14.62 10.04 30.94 0.31 -14.31 16 17 H 0.09 2.74 8.03 -52.49 -0.42 2.32 16 18 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 19 N -0.88 -26.73 13.97 55.49 0.78 -25.95 16 20 Si 0.86 21.46 27.74 -169.99 -4.72 16.74 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 24 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.64 4.69 -51.93 -0.24 0.39 16 26 H 0.05 0.48 8.12 -51.93 -0.42 0.05 16 27 H 0.09 0.97 6.65 -51.93 -0.35 0.62 16 28 H 0.06 0.35 8.04 -51.93 -0.42 -0.07 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.36 6.97 -51.93 -0.36 -0.01 16 31 H 0.06 0.29 7.90 -51.93 -0.41 -0.12 16 32 H 0.07 0.38 5.71 -51.92 -0.30 0.09 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.11 0.59 8.05 -51.93 -0.42 0.17 16 35 H 0.11 0.92 7.89 -51.93 -0.41 0.51 16 36 H 0.07 1.01 8.13 -51.93 -0.42 0.58 16 37 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 41 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 42 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -31.48 350.03 -8.18 -39.66 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -7.13 Total: -1.21 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 0.34 Total: -14.52 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.78 Total: -25.95 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.65 Total: -12.91 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.72 Total: 16.74 kcal Atomic # 16 Polarization: -5.01 SS G_CDS: -2.09 Total: -7.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.48 -8.18 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805533088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.578 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds