Wall clock time and date at job start Tue Mar 31 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47257 * 2 1 4 4 C 1.53004 * 109.46594 * 119.99420 * 2 1 3 5 5 C 1.53000 * 115.55464 * 273.43298 * 4 2 1 6 6 C 1.53083 * 117.53180 * 127.71725 * 4 2 1 7 7 C 1.53000 * 59.98256 * 252.52974 * 6 4 2 8 8 H 1.08996 * 117.49971 * 252.49509 * 7 6 4 9 9 C 1.50697 * 117.49841 * 107.50231 * 7 6 4 10 10 O 1.20832 * 119.99855 * 329.67265 * 9 7 6 11 11 O 1.34228 * 120.00501 * 149.67084 * 9 7 6 12 12 C 1.45195 * 117.00257 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47198 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.47567 * 179.97438 * 13 12 11 15 15 S 1.81003 * 109.47469 * 179.97438 * 14 13 12 16 16 C 1.76202 * 99.99911 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00122 * 0.02562 * 16 15 14 18 18 C 1.38792 * 119.99627 * 180.02562 * 16 15 14 19 19 N 1.31635 * 120.00269 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00476 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46855 * 89.99613 * 20 18 16 22 22 H 1.48492 * 109.47423 * 210.00065 * 20 18 16 23 23 H 1.48499 * 109.46626 * 330.00430 * 20 18 16 24 24 H 1.08999 * 109.46655 * 66.45455 * 1 2 3 25 25 H 1.08998 * 109.47364 * 186.45003 * 1 2 3 26 26 H 1.08994 * 109.47541 * 306.45516 * 1 2 3 27 27 H 1.08997 * 109.47377 * 239.98918 * 2 1 3 28 28 H 1.08999 * 109.47349 * 172.52881 * 3 2 1 29 29 H 1.09002 * 109.46787 * 292.52404 * 3 2 1 30 30 H 1.08997 * 109.47524 * 52.52653 * 3 2 1 31 31 H 1.09002 * 109.47494 * 205.67395 * 5 4 2 32 32 H 1.09007 * 109.46605 * 325.67195 * 5 4 2 33 33 H 1.09001 * 109.47087 * 85.66748 * 5 4 2 34 34 H 1.08997 * 117.49114 * 145.04080 * 6 4 2 35 35 H 1.08994 * 117.51104 * 0.02562 * 6 4 2 36 36 H 1.08997 * 109.47441 * 59.99701 * 12 11 9 37 37 H 1.09001 * 109.47048 * 299.99779 * 12 11 9 38 38 H 1.09001 * 109.46768 * 299.99739 * 13 12 11 39 39 H 1.08997 * 109.47341 * 59.99428 * 13 12 11 40 40 H 1.09001 * 109.46997 * 299.99762 * 14 13 12 41 41 H 1.08997 * 109.47123 * 59.99458 * 14 13 12 42 42 H 0.96998 * 120.00709 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 2.1819 0.1473 2.5010 6 6 3.0587 -1.8463 1.0507 7 6 1.6183 -2.1788 1.4452 8 1 1.4417 -2.5190 2.4656 9 6 0.7330 -2.7946 0.3925 10 8 0.9074 -2.5302 -0.7735 11 8 -0.2492 -3.6367 0.7502 12 6 -1.0621 -4.1924 -0.3168 13 6 -2.1212 -5.1214 0.2800 14 6 -2.9783 -5.7066 -0.8442 15 16 -4.2307 -6.8062 -0.1382 16 6 -5.0494 -7.3226 -1.6106 17 1 -4.7196 -6.9525 -2.5700 18 6 -6.1182 -8.2050 -1.5372 19 7 -6.7303 -8.5905 -2.6370 20 14 -6.6884 -8.8457 0.1224 21 1 -7.7232 -7.9355 0.6754 22 1 -7.2621 -10.2054 -0.0425 23 1 -5.5330 -8.9053 1.0533 24 1 -0.3632 0.4105 -0.9421 25 1 -0.3634 -1.0211 0.1154 26 1 -0.3634 0.6106 0.8265 27 1 1.8934 -0.5140 -0.8898 28 1 3.1218 1.4454 0.1336 29 1 1.7900 1.9162 -0.9493 30 1 1.5717 1.9935 0.8155 31 1 2.9357 -0.2846 3.1594 32 1 2.4853 1.1537 2.2123 33 1 1.2260 0.1916 3.0228 34 1 3.8296 -1.9672 1.8117 35 1 3.3661 -2.0727 0.0298 36 1 -0.4279 -4.7559 -1.0010 37 1 -1.5526 -3.3837 -0.8587 38 1 -1.6311 -5.9301 0.8222 39 1 -2.7554 -4.5575 0.9640 40 1 -3.4684 -4.8976 -1.3860 41 1 -2.3444 -6.2704 -1.5285 42 1 -7.4770 -9.2074 -2.5858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805533088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:44 Heat of formation + Delta-G solvation = -105.517806 kcal Electronic energy + Delta-G solvation = -20205.739840 eV Core-core repulsion = 17083.501103 eV Total energy + Delta-G solvation = -3122.238737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.139 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.03452 -39.67093 -37.47827 -34.98692 -34.70255 -34.45414 -29.88216 -28.39215 -27.83132 -27.79386 -25.42879 -23.54647 -22.79571 -21.59804 -19.77308 -19.50253 -18.76751 -17.84158 -17.41826 -17.11892 -16.38259 -16.19719 -15.88122 -15.21426 -14.98624 -14.89338 -14.53192 -14.16363 -14.01801 -13.89523 -13.56874 -13.41497 -13.36359 -13.05328 -12.88178 -12.63918 -12.46434 -12.41169 -12.28087 -12.25386 -12.07473 -11.87832 -11.74543 -11.53284 -11.19349 -11.18001 -11.10318 -10.72501 -10.63115 -9.03165 -8.53686 -6.26352 1.00923 1.04108 1.31870 1.42841 1.50504 1.82523 2.23465 2.63683 2.72932 2.84246 3.47313 3.57659 3.72242 3.78891 3.82608 3.92237 4.02278 4.08152 4.24330 4.29450 4.34449 4.43952 4.50557 4.60685 4.72992 4.75072 4.83137 4.93277 4.94462 4.96021 5.00263 5.03502 5.07889 5.13309 5.21050 5.32124 5.35562 5.46486 5.58646 5.67695 6.08458 6.72228 6.89685 8.59435 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.039483 B = 0.002580 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.995873 B =10851.936348 C =11051.429852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.077 4.077 5 C -0.121 4.121 6 C -0.127 4.127 7 C -0.182 4.182 8 H 0.148 0.852 9 C 0.489 3.511 10 O -0.532 6.532 11 O -0.358 6.358 12 C 0.080 3.920 13 C -0.087 4.087 14 C -0.074 4.074 15 S -0.205 6.205 16 C -0.526 4.526 17 H 0.051 0.949 18 C 0.037 3.963 19 N -0.922 5.922 20 Si 0.927 3.073 21 H -0.260 1.260 22 H -0.262 1.262 23 H -0.227 1.227 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.138 0.862 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.219 19.047 12.917 31.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.196 4.196 4 C -0.077 4.077 5 C -0.177 4.177 6 C -0.164 4.164 7 C -0.201 4.201 8 H 0.166 0.834 9 C 0.335 3.665 10 O -0.423 6.423 11 O -0.275 6.275 12 C 0.005 3.995 13 C -0.126 4.126 14 C -0.222 4.222 15 S 0.023 5.977 16 C -0.673 4.673 17 H 0.069 0.931 18 C -0.168 4.168 19 N -0.560 5.560 20 Si 0.747 3.253 21 H -0.185 1.185 22 H -0.187 1.187 23 H -0.150 1.150 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.156 0.844 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.878 18.703 13.539 31.129 hybrid contribution -0.778 -0.546 -1.896 2.121 sum 20.100 18.157 11.643 29.483 Atomic orbital electron populations 1.21909 0.95954 1.00519 1.01772 1.20739 0.95009 0.97101 0.95697 1.21859 1.01669 0.93947 1.02154 1.21837 1.00389 0.86960 0.98510 1.21568 1.02873 0.99794 0.93490 1.23488 0.89376 0.99550 1.03956 1.22107 0.97721 1.01537 0.98739 0.83423 1.23071 0.78728 0.75360 0.89362 1.90654 1.70251 1.59790 1.21571 1.86444 1.43018 1.57088 1.40942 1.22972 0.91709 0.96728 0.88120 1.21141 0.95458 0.98855 0.97100 1.22964 0.98339 1.00235 1.00669 1.83801 1.39880 1.58596 1.15420 1.22342 1.19744 1.32911 0.92353 0.93114 1.25807 0.94903 0.94849 1.01227 1.70039 1.22569 1.33539 1.29848 0.85699 0.81086 0.78920 0.79563 1.18493 1.18695 1.15006 0.93194 0.95135 0.91557 0.91821 0.91309 0.92922 0.91148 0.90429 0.89694 0.91705 0.84415 0.88913 0.91066 0.91239 0.89600 0.89669 0.91161 0.91080 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.60 71.98 0.62 -2.29 16 2 C -0.07 -1.15 2.22 -10.79 -0.02 -1.18 16 3 C -0.14 -1.67 7.90 71.98 0.57 -1.10 16 4 C -0.08 -1.06 1.92 -52.15 -0.10 -1.16 16 5 C -0.12 -1.01 9.51 71.98 0.68 -0.33 16 6 C -0.13 -1.67 9.36 30.62 0.29 -1.38 16 7 C -0.18 -3.10 5.91 -11.54 -0.07 -3.17 16 8 H 0.15 1.99 8.14 -2.39 -0.02 1.97 16 9 C 0.49 12.24 5.26 71.24 0.37 12.61 16 10 O -0.53 -15.73 13.02 21.95 0.29 -15.45 16 11 O -0.36 -9.59 10.22 -51.40 -0.53 -10.11 16 12 C 0.08 2.23 5.47 71.98 0.39 2.62 16 13 C -0.09 -2.61 5.60 30.59 0.17 -2.44 16 14 C -0.07 -2.81 5.67 71.98 0.41 -2.40 16 15 S -0.20 -9.82 19.41 -56.49 -1.10 -10.91 16 16 C -0.53 -31.15 10.04 67.95 0.68 -30.47 16 17 H 0.05 3.27 8.03 -2.91 -0.02 3.25 16 18 C 0.04 2.18 5.50 84.85 0.47 2.64 16 19 N -0.92 -57.05 13.97 21.65 0.30 -56.74 16 20 Si 0.93 43.94 27.74 68.60 1.90 45.84 16 21 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.23 -10.28 6.74 99.48 0.67 -9.61 16 24 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.03 0.74 4.69 -2.39 -0.01 0.73 16 26 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 27 H 0.06 1.41 6.65 -2.39 -0.02 1.40 16 28 H 0.07 0.67 8.04 -2.39 -0.02 0.65 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.68 6.97 -2.39 -0.02 0.66 16 31 H 0.08 0.43 7.90 -2.39 -0.02 0.41 16 32 H 0.08 0.57 5.71 -2.38 -0.01 0.55 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.14 1.00 8.05 -2.39 -0.02 0.98 16 35 H 0.09 1.51 7.89 -2.39 -0.02 1.49 16 36 H 0.07 1.98 8.13 -2.39 -0.02 1.97 16 37 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 38 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.07 2.73 8.14 -2.40 -0.02 2.71 16 42 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -69.01 350.03 6.27 -62.74 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.94 Total: 12.68 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.46 Total: -28.04 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.30 Total: -56.74 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.24 Total: -25.56 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Atomic # 16 Polarization: -9.82 SS G_CDS: -1.10 Total: -10.91 kcal Total: -69.01 6.27 -62.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805533088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.779 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds