Wall clock time and date at job start Tue Mar 31 2020 05:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81403 * 102.99779 * 2 1 4 4 C 1.53002 * 109.47017 * 180.02562 * 3 2 1 5 5 C 1.53007 * 115.54821 * 302.04736 * 4 3 2 6 6 C 1.50704 * 109.46899 * 294.18144 * 5 4 3 7 7 O 1.20821 * 119.99893 * 355.76733 * 6 5 4 8 8 O 1.34221 * 119.99803 * 175.76915 * 6 5 4 9 9 C 1.45207 * 116.99964 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46898 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47450 * 299.99808 * 10 9 8 12 12 C 1.53003 * 109.47077 * 60.00289 * 10 9 8 13 13 C 1.50701 * 109.46742 * 179.97438 * 10 9 8 14 14 H 1.07999 * 119.99880 * 357.67863 * 13 10 9 15 15 C 1.37878 * 119.99787 * 177.68408 * 13 10 9 16 16 N 1.31506 * 120.00231 * 6.30058 * 15 13 10 17 17 Si 1.86809 * 119.99705 * 186.30462 * 15 13 10 18 18 H 1.48496 * 109.46853 * 94.98662 * 17 15 13 19 19 H 1.48495 * 109.46869 * 214.98607 * 17 15 13 20 20 H 1.48499 * 109.47101 * 334.98552 * 17 15 13 21 21 C 1.53002 * 117.49931 * 87.71206 * 4 3 2 22 22 C 1.52995 * 117.50225 * 156.37531 * 4 3 2 23 23 H 1.08999 * 109.47078 * 299.99950 * 1 2 3 24 24 H 1.09001 * 109.46882 * 60.00553 * 1 2 3 25 25 H 1.09007 * 109.46588 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47194 * 60.00326 * 3 2 1 27 27 H 1.08994 * 109.46793 * 299.99535 * 3 2 1 28 28 H 1.08997 * 109.47104 * 174.18341 * 5 4 3 29 29 H 1.08997 * 109.47072 * 54.18092 * 5 4 3 30 30 H 1.08993 * 109.46820 * 299.99709 * 9 8 6 31 31 H 1.08998 * 109.46970 * 59.99960 * 9 8 6 32 32 H 1.08998 * 109.46933 * 63.31968 * 11 10 9 33 33 H 1.08999 * 109.47105 * 183.32100 * 11 10 9 34 34 H 1.08996 * 109.46981 * 303.32484 * 11 10 9 35 35 H 1.08993 * 109.47558 * 59.99470 * 12 10 9 36 36 H 1.08997 * 109.46906 * 180.02562 * 12 10 9 37 37 H 1.09002 * 109.46795 * 299.99699 * 12 10 9 38 38 H 0.97000 * 120.00227 * 179.97438 * 16 15 13 39 39 H 1.08996 * 117.49717 * 214.99884 * 21 4 3 40 40 H 1.08992 * 117.49934 * 0.02730 * 21 4 3 41 41 H 1.09001 * 117.49819 * 359.97438 * 22 4 3 42 42 H 1.08999 * 117.50003 * 144.99186 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.4810 1.2865 1.1691 6 6 4.0933 1.9719 2.4540 7 8 3.3670 2.9371 2.4284 8 8 4.5550 1.5102 3.6267 9 6 4.1401 2.2196 4.8238 10 6 4.7608 1.5524 6.0528 11 6 4.2934 0.0978 6.1342 12 6 6.2860 1.5924 5.9392 13 6 4.3306 2.2889 7.2952 14 1 3.7103 3.1692 7.2135 15 6 4.7291 1.8390 8.5361 16 7 5.5834 0.8438 8.6316 17 14 4.0553 2.6432 10.0818 18 1 2.8840 1.8722 10.5704 19 1 5.1077 2.6616 11.1292 20 1 3.6385 4.0350 9.7743 21 6 4.4498 1.9660 -1.3570 22 6 4.3039 3.2551 -0.5446 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8032 2.2371 0.8899 27 1 1.8031 2.2370 -0.8900 28 1 5.5563 1.3800 1.0175 29 1 4.2123 0.2316 1.2246 30 1 4.4727 3.2559 4.7657 31 1 3.0535 2.1907 4.9050 32 1 4.6552 -0.4493 5.2637 33 1 4.6879 -0.3604 7.0411 34 1 3.2041 0.0669 6.1557 35 1 6.6190 2.6286 5.8812 36 1 6.7282 1.1167 6.8145 37 1 6.5975 1.0600 5.0405 38 1 5.8640 0.5276 9.5046 39 1 5.4415 1.5176 -1.4160 40 1 3.8322 1.8606 -2.2489 41 1 3.5903 3.9973 -0.9024 42 1 5.1996 3.6548 -0.0691 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845515708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:42 Heat of formation + Delta-G solvation = -78.457382 kcal Electronic energy + Delta-G solvation = -21063.366837 eV Core-core repulsion = 17942.301528 eV Total energy + Delta-G solvation = -3121.065309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.139 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10838 -38.17596 -36.31686 -34.75797 -31.30329 -30.02591 -29.37819 -28.23887 -25.59336 -25.58504 -24.98831 -22.60407 -21.27434 -19.17619 -18.80202 -17.14565 -16.50173 -16.02788 -15.78331 -15.46556 -15.22608 -14.79665 -14.63456 -14.02264 -13.81535 -13.25251 -13.23607 -12.95271 -12.68970 -12.55288 -12.01055 -11.78169 -11.70090 -11.53176 -11.38169 -11.15069 -10.93900 -10.69030 -10.55615 -10.47127 -10.38509 -10.19078 -10.01353 -9.84943 -9.61173 -9.37232 -9.24620 -8.74703 -8.34228 -7.75332 -6.00764 -4.11613 1.52651 2.46620 2.71837 3.17455 3.28414 3.35764 3.39653 3.81055 4.37552 4.40433 4.57792 4.62680 4.80468 4.95921 5.00087 5.21711 5.25278 5.36684 5.48031 5.49951 5.53175 5.66054 5.71901 5.78918 5.91623 5.97204 6.13952 6.14795 6.50822 6.78399 7.01005 7.13701 7.18265 7.21029 7.44204 7.64398 7.71925 8.07495 8.18820 8.34015 8.43224 8.88208 9.53470 11.00370 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.023899 B = 0.003714 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.292554 B = 7536.367890 C = 7980.497907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.261 6.261 3 C -0.047 4.047 4 C -0.099 4.099 5 C -0.081 4.081 6 C 0.457 3.543 7 O -0.518 6.518 8 O -0.349 6.349 9 C 0.086 3.914 10 C 0.069 3.931 11 C -0.128 4.128 12 C -0.129 4.129 13 C -0.512 4.512 14 H 0.056 0.944 15 C 0.069 3.931 16 N -0.881 5.881 17 Si 0.894 3.106 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.163 4.163 22 C -0.152 4.152 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.081 0.919 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.086 0.914 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 -0.542 -18.778 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.035 6.035 3 C -0.195 4.195 4 C -0.100 4.100 5 C -0.119 4.119 6 C 0.301 3.699 7 O -0.408 6.408 8 O -0.265 6.265 9 C 0.013 3.987 10 C 0.069 3.931 11 C -0.186 4.186 12 C -0.187 4.187 13 C -0.550 4.550 14 H 0.074 0.926 15 C -0.133 4.133 16 N -0.519 5.519 17 Si 0.721 3.279 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.200 4.200 22 C -0.191 4.191 23 H 0.096 0.904 24 H 0.092 0.908 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.104 0.896 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.797 -1.253 -18.575 19.000 hybrid contribution -1.396 1.610 0.967 2.340 sum -5.194 0.357 -17.608 18.361 Atomic orbital electron populations 1.23378 0.94564 1.06412 1.04816 1.86819 1.06970 1.11642 1.98024 1.22978 0.96730 0.94089 1.05696 1.20613 0.92031 1.02647 0.94694 1.20886 1.01597 1.01428 0.87954 1.23390 0.77741 0.82391 0.86414 1.90577 1.35147 1.26894 1.88150 1.86523 1.67578 1.56929 1.15453 1.23625 0.98953 0.95117 0.80967 1.18247 0.92979 0.93312 0.88590 1.21734 0.98045 0.97817 1.01014 1.21791 0.97848 0.98620 1.00407 1.20946 1.32095 1.11983 0.89988 0.92553 1.24849 0.94554 0.95101 0.98783 1.69842 1.31201 1.26909 1.23912 0.86554 0.78742 0.79738 0.82826 1.20669 1.21182 1.19905 1.23153 1.01905 1.01277 0.93651 1.23043 1.02913 0.90627 1.02538 0.90430 0.90752 0.88120 0.88348 0.90153 0.87683 0.86926 0.92740 0.92720 0.96231 0.89997 0.95945 0.95952 0.89557 0.96571 0.92931 0.88202 0.88289 0.88504 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.76 101.05 1.09 -0.02 16 2 S -0.26 -3.07 21.25 -107.50 -2.28 -5.36 16 3 C -0.05 -0.55 5.59 37.16 0.21 -0.34 16 4 C -0.10 -1.13 1.08 -154.51 -0.17 -1.29 16 5 C -0.08 -1.06 5.50 -27.88 -0.15 -1.21 16 6 C 0.46 8.04 7.79 36.01 0.28 8.32 16 7 O -0.52 -10.00 14.29 -18.75 -0.27 -10.26 16 8 O -0.35 -7.08 8.94 -39.23 -0.35 -7.44 16 9 C 0.09 1.94 4.26 37.16 0.16 2.10 16 10 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 11 C -0.13 -3.14 8.09 37.16 0.30 -2.84 16 12 C -0.13 -3.15 8.13 37.16 0.30 -2.85 16 13 C -0.51 -13.81 8.01 -34.44 -0.28 -14.09 16 14 H 0.06 1.52 7.75 -52.49 -0.41 1.11 16 15 C 0.07 1.85 5.11 -17.82 -0.09 1.76 16 16 N -0.88 -24.06 9.38 55.43 0.52 -23.54 16 17 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.16 -1.44 9.92 -26.69 -0.26 -1.71 16 22 C -0.15 -1.55 9.87 -26.69 -0.26 -1.82 16 23 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 24 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 26 H 0.10 1.37 6.70 -51.93 -0.35 1.02 16 27 H 0.08 0.80 8.11 -51.93 -0.42 0.37 16 28 H 0.10 1.17 8.09 -51.93 -0.42 0.75 16 29 H 0.11 1.46 7.19 -51.93 -0.37 1.09 16 30 H 0.05 1.24 8.13 -51.93 -0.42 0.82 16 31 H 0.05 1.25 8.13 -51.93 -0.42 0.82 16 32 H 0.02 0.43 7.78 -51.93 -0.40 0.03 16 33 H 0.08 2.16 6.05 -51.93 -0.31 1.84 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 2.28 6.02 -51.93 -0.31 1.96 16 37 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 38 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 352.64 15.07 5.31 5.31 Total: -1.00 -28.81 352.64 -8.24 -37.05 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.18 Total: 0.70 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 1.03 Total: -12.37 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.52 Total: -23.54 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -0.62 Total: -17.70 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.28 Total: -5.36 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.81 -8.24 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845515708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.406 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds