Wall clock time and date at job start Tue Mar 31 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47606 * 75.95958 * 3 2 1 5 5 C 1.53001 * 109.47125 * 315.95735 * 3 2 1 6 6 C 1.52999 * 109.47151 * 174.42810 * 5 3 2 7 7 C 1.53000 * 109.47450 * 174.17490 * 6 5 3 8 8 C 1.53002 * 109.46809 * 294.17220 * 6 5 3 9 9 O 1.42901 * 109.46746 * 195.95885 * 3 2 1 10 10 C 1.35630 * 117.00377 * 275.93064 * 9 3 2 11 11 C 1.38673 * 120.15355 * 5.36523 * 10 9 3 12 12 C 1.38096 * 120.08491 * 179.74816 * 11 10 9 13 13 C 1.38684 * 120.41988 * 0.55668 * 12 11 10 14 14 C 1.37702 * 120.32219 * 359.69969 * 13 12 11 15 15 C 1.39850 * 119.90025 * 0.02562 * 14 13 12 16 16 C 1.47530 * 120.20827 * 180.02562 * 15 14 13 17 17 O 1.21811 * 120.00032 * 179.97438 * 16 15 14 18 18 C 1.41829 * 119.99694 * 359.97438 * 16 15 14 19 19 H 1.07998 * 120.00249 * 359.97438 * 18 16 15 20 20 C 1.40327 * 120.00012 * 180.02562 * 18 16 15 21 21 N 1.30537 * 119.99763 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99955 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47068 * 89.99914 * 22 20 18 24 24 H 1.48503 * 109.47136 * 209.99439 * 22 20 18 25 25 H 1.48493 * 109.47645 * 329.99721 * 22 20 18 26 26 H 4.18748 * 15.03890 * 0.02562 * 4 2 1 27 27 H 1.09007 * 109.47333 * 294.42617 * 5 3 2 28 28 H 1.09001 * 109.47251 * 54.42336 * 5 3 2 29 29 H 1.09000 * 109.47556 * 54.16842 * 6 5 3 30 30 H 1.08999 * 109.47590 * 184.78221 * 7 6 5 31 31 H 1.08999 * 109.46762 * 304.78810 * 7 6 5 32 32 H 1.09006 * 109.46850 * 64.78482 * 7 6 5 33 33 H 1.09004 * 109.47404 * 60.00105 * 8 6 5 34 34 H 1.09000 * 109.46929 * 179.97438 * 8 6 5 35 35 H 1.08998 * 109.47463 * 299.99904 * 8 6 5 36 36 H 1.07990 * 119.96206 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.79049 * 180.30043 * 12 11 10 38 38 H 1.07998 * 119.84046 * 179.72253 * 13 12 11 39 39 H 1.07994 * 120.05509 * 180.02562 * 14 13 12 40 40 H 0.96999 * 120.00013 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.2485 -0.9969 5 6 3.1565 -1.0360 1.0028 6 6 4.6801 -1.1343 0.9037 7 6 5.2040 -2.0611 2.0026 8 6 5.0668 -1.6973 -0.4654 9 8 3.1217 1.2963 0.3704 10 6 3.2088 2.2250 -0.6141 11 6 2.7414 1.9363 -1.8874 12 6 2.8261 2.8849 -2.8875 13 6 3.3879 4.1267 -2.6317 14 6 3.8621 4.4297 -1.3749 15 6 3.7780 3.4812 -0.3507 16 6 4.2834 3.7987 0.9985 17 8 4.2078 2.9699 1.8879 18 6 4.8574 5.0691 1.2598 19 1 4.9248 5.8038 0.4711 20 6 5.3387 5.3710 2.5429 21 7 5.2576 4.4828 3.4961 22 14 6.0953 7.0439 2.8869 23 1 5.0359 7.9838 3.3338 24 1 7.1222 6.9132 3.9516 25 1 6.7291 7.5646 1.6491 26 1 -1.0500 0.0004 -0.0004 27 1 2.8768 -0.7337 2.0121 28 1 2.7144 -2.0068 0.7787 29 1 5.1169 -0.1432 1.0255 30 1 6.2938 -2.0647 1.9860 31 1 4.8565 -1.7066 2.9730 32 1 4.8347 -3.0724 1.8316 33 1 4.6936 -1.0371 -1.2484 34 1 6.1523 -1.7669 -0.5362 35 1 4.6301 -2.6885 -0.5873 36 1 2.3066 0.9701 -2.0961 37 1 2.4562 2.6566 -3.8762 38 1 3.4534 4.8600 -3.4219 39 1 4.2984 5.3982 -1.1804 40 1 5.5900 4.6916 4.3831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233524190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:40 Heat of formation + Delta-G solvation = -10.086035 kcal Electronic energy + Delta-G solvation = -22537.770644 eV Core-core repulsion = 19284.226189 eV Total energy + Delta-G solvation = -3253.544456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.136 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.80606 -37.62855 -36.00080 -35.63101 -33.09486 -32.54874 -30.52594 -29.77613 -28.50906 -27.01313 -26.62487 -24.16106 -22.75187 -21.58301 -19.77526 -19.57211 -18.41127 -17.48198 -16.47391 -15.53414 -15.33916 -15.31364 -14.83568 -14.42901 -13.92067 -13.73151 -13.43246 -13.26152 -12.85902 -12.46453 -12.28356 -12.24266 -12.03135 -11.57781 -11.54066 -11.35202 -11.18466 -11.08120 -10.90857 -10.79069 -10.71598 -10.51363 -10.34258 -10.28603 -10.18201 -10.02371 -9.76591 -8.91190 -8.17691 -7.44738 -7.31381 -6.19735 -4.79953 1.83377 2.08910 2.75628 2.92240 3.09082 3.16583 3.19646 4.01009 4.06189 4.10754 4.38184 4.70726 5.01090 5.08096 5.15729 5.27997 5.35432 5.48332 5.57441 5.67960 5.77655 5.82179 5.86977 5.91079 5.95269 5.98971 6.02705 6.12014 6.18482 6.23136 6.35617 6.41177 6.53014 6.70574 6.75670 6.94820 6.97688 7.18580 7.33115 7.50501 7.70437 8.10984 8.13108 8.88204 8.93446 10.41705 10.65258 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.005917 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.020248 B = 4731.301998 C = 5860.345664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.204 4.204 3 C 0.184 3.816 4 H 0.090 0.910 5 C -0.098 4.098 6 C -0.101 4.101 7 C -0.142 4.142 8 C -0.149 4.149 9 O -0.249 6.249 10 C 0.147 3.853 11 C -0.225 4.225 12 C -0.093 4.093 13 C -0.174 4.174 14 C -0.060 4.060 15 C -0.134 4.134 16 C 0.391 3.609 17 O -0.516 6.516 18 C -0.522 4.522 19 H 0.071 0.929 20 C 0.081 3.919 21 N -0.737 5.737 22 Si 0.903 3.097 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.262 1.262 26 H 0.218 0.782 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.135 0.865 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.237 -8.371 -8.273 12.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.204 4.204 3 C 0.128 3.872 4 H 0.107 0.893 5 C -0.135 4.135 6 C -0.120 4.120 7 C -0.199 4.199 8 C -0.206 4.206 9 O -0.161 6.161 10 C 0.101 3.899 11 C -0.244 4.244 12 C -0.112 4.112 13 C -0.192 4.192 14 C -0.078 4.078 15 C -0.135 4.135 16 C 0.284 3.716 17 O -0.403 6.403 18 C -0.553 4.553 19 H 0.090 0.910 20 C -0.141 4.141 21 N -0.366 5.366 22 Si 0.727 3.273 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.186 1.186 26 H 0.235 0.765 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.153 0.847 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.197 -8.866 -7.456 12.017 hybrid contribution -0.111 0.894 -0.300 0.949 sum -3.308 -7.972 -7.756 11.604 Atomic orbital electron populations 1.24903 0.95814 0.98921 1.00969 1.23791 0.95063 1.01270 1.00264 1.19365 0.82952 0.84817 1.00099 0.89307 1.21635 0.96046 0.96026 0.99804 1.21129 0.94583 1.01341 0.94925 1.21778 1.00828 0.98569 0.98750 1.21915 1.01396 1.00263 0.97017 1.86626 1.78582 1.18387 1.32464 1.19429 0.94126 0.89689 0.86697 1.21081 1.08683 1.01011 0.93616 1.20798 0.98965 0.93549 0.97850 1.20949 1.03753 0.97166 0.97379 1.21410 0.96120 0.99003 0.91306 1.21569 1.00692 0.90740 1.00536 1.17978 0.80881 0.88932 0.83773 1.90548 1.54759 1.49891 1.45146 1.20895 1.37384 1.00942 0.96096 0.91046 1.25945 0.94392 0.97869 0.95933 1.69968 1.31625 1.33223 1.01803 0.86434 0.79307 0.82556 0.78989 1.19509 1.20255 1.18588 0.76539 0.90052 0.90493 0.89009 0.92715 0.92342 0.93293 0.92904 0.92574 0.93033 0.86506 0.86952 0.86759 0.84747 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 19.25 29.55 0.57 -2.16 16 2 C -0.20 -3.41 11.87 -37.12 -0.44 -3.85 16 3 C 0.18 3.19 2.00 -29.52 -0.06 3.13 16 4 H 0.09 1.38 4.58 -51.93 -0.24 1.14 16 5 C -0.10 -1.50 4.34 -26.73 -0.12 -1.61 16 6 C -0.10 -1.53 2.87 -90.62 -0.26 -1.79 16 7 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 8 C -0.15 -1.88 8.97 37.16 0.33 -1.55 16 9 O -0.25 -5.63 7.32 -40.42 -0.30 -5.92 16 10 C 0.15 3.28 6.60 -38.61 -0.25 3.02 16 11 C -0.23 -4.14 8.67 -39.47 -0.34 -4.48 16 12 C -0.09 -1.55 10.03 -39.47 -0.40 -1.94 16 13 C -0.17 -3.00 10.02 -39.61 -0.40 -3.40 16 14 C -0.06 -1.24 9.43 -39.17 -0.37 -1.61 16 15 C -0.13 -3.26 5.90 -104.69 -0.62 -3.88 16 16 C 0.39 11.30 6.91 -34.42 -0.24 11.06 16 17 O -0.52 -16.54 13.72 -16.74 -0.23 -16.77 16 18 C -0.52 -14.52 8.86 -37.42 -0.33 -14.85 16 19 H 0.07 1.80 6.02 -52.49 -0.32 1.48 16 20 C 0.08 2.21 5.50 -17.32 -0.10 2.11 16 21 N -0.74 -21.43 11.73 55.57 0.65 -20.77 16 22 Si 0.90 19.51 29.56 -169.99 -5.03 14.48 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 26 H 0.22 2.20 7.80 -54.09 -0.42 1.78 16 27 H 0.08 1.38 8.14 -51.92 -0.42 0.95 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.76 7.69 -51.93 -0.40 1.36 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.69 6.48 -51.93 -0.34 0.35 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.12 1.89 5.66 -52.49 -0.30 1.59 16 37 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.64 6.20 -52.49 -0.33 2.31 16 40 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -33.62 339.90 -7.72 -41.34 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.27 Total: 5.83 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.67 Total: -23.31 kcal Atomic # 7 Polarization: -21.43 SS G_CDS: 0.65 Total: -20.77 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.53 Total: -22.69 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.62 -7.72 -41.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.255 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds