Wall clock time and date at job start Tue Mar 31 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08996 * 109.47606 * 75.95958 * 3 2 1 5 5 C 1.53001 * 109.47125 * 315.95735 * 3 2 1 6 6 C 1.52999 * 109.47151 * 174.42810 * 5 3 2 7 7 C 1.53000 * 109.47450 * 174.17490 * 6 5 3 8 8 C 1.53002 * 109.46809 * 294.17220 * 6 5 3 9 9 O 1.42901 * 109.46746 * 195.95885 * 3 2 1 10 10 C 1.35630 * 117.00377 * 275.93064 * 9 3 2 11 11 C 1.38673 * 120.15355 * 5.36523 * 10 9 3 12 12 C 1.38096 * 120.08491 * 179.74816 * 11 10 9 13 13 C 1.38684 * 120.41988 * 0.55668 * 12 11 10 14 14 C 1.37702 * 120.32219 * 359.69969 * 13 12 11 15 15 C 1.39850 * 119.90025 * 0.02562 * 14 13 12 16 16 C 1.47530 * 120.20827 * 180.02562 * 15 14 13 17 17 O 1.21811 * 120.00032 * 179.97438 * 16 15 14 18 18 C 1.41829 * 119.99694 * 359.97438 * 16 15 14 19 19 H 1.07998 * 120.00249 * 359.97438 * 18 16 15 20 20 C 1.40327 * 120.00012 * 180.02562 * 18 16 15 21 21 N 1.30537 * 119.99763 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 119.99955 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47068 * 89.99914 * 22 20 18 24 24 H 1.48503 * 109.47136 * 209.99439 * 22 20 18 25 25 H 1.48493 * 109.47645 * 329.99721 * 22 20 18 26 26 H 4.18748 * 15.03890 * 0.02562 * 4 2 1 27 27 H 1.09007 * 109.47333 * 294.42617 * 5 3 2 28 28 H 1.09001 * 109.47251 * 54.42336 * 5 3 2 29 29 H 1.09000 * 109.47556 * 54.16842 * 6 5 3 30 30 H 1.08999 * 109.47590 * 184.78221 * 7 6 5 31 31 H 1.08999 * 109.46762 * 304.78810 * 7 6 5 32 32 H 1.09006 * 109.46850 * 64.78482 * 7 6 5 33 33 H 1.09004 * 109.47404 * 60.00105 * 8 6 5 34 34 H 1.09000 * 109.46929 * 179.97438 * 8 6 5 35 35 H 1.08998 * 109.47463 * 299.99904 * 8 6 5 36 36 H 1.07990 * 119.96206 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.79049 * 180.30043 * 12 11 10 38 38 H 1.07998 * 119.84046 * 179.72253 * 13 12 11 39 39 H 1.07994 * 120.05509 * 180.02562 * 14 13 12 40 40 H 0.96999 * 120.00013 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.2485 -0.9969 5 6 3.1565 -1.0360 1.0028 6 6 4.6801 -1.1343 0.9037 7 6 5.2040 -2.0611 2.0026 8 6 5.0668 -1.6973 -0.4654 9 8 3.1217 1.2963 0.3704 10 6 3.2088 2.2250 -0.6141 11 6 2.7414 1.9363 -1.8874 12 6 2.8261 2.8849 -2.8875 13 6 3.3879 4.1267 -2.6317 14 6 3.8621 4.4297 -1.3749 15 6 3.7780 3.4812 -0.3507 16 6 4.2834 3.7987 0.9985 17 8 4.2078 2.9699 1.8879 18 6 4.8574 5.0691 1.2598 19 1 4.9248 5.8038 0.4711 20 6 5.3387 5.3710 2.5429 21 7 5.2576 4.4828 3.4961 22 14 6.0953 7.0439 2.8869 23 1 5.0359 7.9838 3.3338 24 1 7.1222 6.9132 3.9516 25 1 6.7291 7.5646 1.6491 26 1 -1.0500 0.0004 -0.0004 27 1 2.8768 -0.7337 2.0121 28 1 2.7144 -2.0068 0.7787 29 1 5.1169 -0.1432 1.0255 30 1 6.2938 -2.0647 1.9860 31 1 4.8565 -1.7066 2.9730 32 1 4.8347 -3.0724 1.8316 33 1 4.6936 -1.0371 -1.2484 34 1 6.1523 -1.7669 -0.5362 35 1 4.6301 -2.6885 -0.5873 36 1 2.3066 0.9701 -2.0961 37 1 2.4562 2.6566 -3.8762 38 1 3.4534 4.8600 -3.4219 39 1 4.2984 5.3982 -1.1804 40 1 5.5900 4.6916 4.3831 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233524190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:40 Heat of formation + Delta-G solvation = -28.937912 kcal Electronic energy + Delta-G solvation = -22538.588123 eV Core-core repulsion = 19284.226189 eV Total energy + Delta-G solvation = -3254.361935 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31181 -39.17702 -37.94944 -36.95470 -34.72180 -34.27395 -32.17684 -31.13461 -29.92251 -28.65309 -28.07867 -25.44424 -24.46944 -23.04784 -21.54380 -20.86864 -19.70518 -18.95076 -18.39947 -17.36910 -16.81000 -16.58324 -16.23519 -15.97977 -15.32450 -15.15628 -14.97917 -14.86951 -14.49539 -14.11137 -13.74873 -13.46156 -13.30337 -13.25034 -13.06371 -12.79351 -12.70838 -12.68655 -12.33360 -12.19451 -12.08436 -12.07521 -11.92318 -11.72692 -11.53796 -11.42910 -11.00486 -10.95863 -9.74613 -9.44831 -9.02317 -8.26087 -6.99694 0.25322 0.59008 1.36920 1.38626 1.50581 1.54073 1.72435 2.22250 2.30105 2.67064 2.90713 3.24423 3.75492 3.81406 3.84754 3.96032 4.00770 4.03319 4.15870 4.32000 4.41617 4.54557 4.56847 4.65860 4.71502 4.77354 4.86079 4.88425 4.95899 5.00401 5.03392 5.15921 5.24081 5.27105 5.40000 5.42229 5.48227 5.53611 5.69748 5.96847 6.06800 6.53106 6.61835 6.75746 6.90861 8.35604 8.57609 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.013510 B = 0.005917 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.020248 B = 4731.301998 C = 5860.345664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.259 4.259 3 C 0.179 3.821 4 H 0.105 0.895 5 C -0.093 4.093 6 C -0.101 4.101 7 C -0.138 4.138 8 C -0.142 4.142 9 O -0.291 6.291 10 C 0.129 3.871 11 C -0.223 4.223 12 C -0.072 4.072 13 C -0.165 4.165 14 C -0.064 4.064 15 C -0.191 4.191 16 C 0.367 3.633 17 O -0.570 6.570 18 C -0.551 4.551 19 H 0.091 0.909 20 C 0.023 3.977 21 N -0.792 5.792 22 Si 0.993 3.007 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.245 1.245 26 H 0.259 0.741 27 H 0.050 0.950 28 H 0.113 0.887 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.135 0.865 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -8.261 -11.490 14.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.259 4.259 3 C 0.124 3.876 4 H 0.122 0.878 5 C -0.130 4.130 6 C -0.120 4.120 7 C -0.195 4.195 8 C -0.199 4.199 9 O -0.204 6.204 10 C 0.083 3.917 11 C -0.242 4.242 12 C -0.090 4.090 13 C -0.183 4.183 14 C -0.082 4.082 15 C -0.193 4.193 16 C 0.264 3.736 17 O -0.462 6.462 18 C -0.582 4.582 19 H 0.109 0.891 20 C -0.195 4.195 21 N -0.421 5.421 22 Si 0.812 3.188 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.168 1.168 26 H 0.275 0.725 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.157 0.843 37 H 0.181 0.819 38 H 0.176 0.824 39 H 0.153 0.847 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.237 -8.754 -10.705 14.463 hybrid contribution 0.098 0.779 0.612 0.996 sum -4.139 -7.975 -10.093 13.513 Atomic orbital electron populations 1.25874 0.96641 0.96228 0.98496 1.23953 0.95562 1.03744 1.02643 1.19586 0.83934 0.82994 1.01117 0.87764 1.21662 0.96238 0.97190 0.97914 1.21055 0.94381 0.98998 0.97526 1.21755 1.01060 0.99605 0.97125 1.21862 1.01885 1.01407 0.94719 1.86572 1.79239 1.20391 1.34153 1.19677 0.94542 0.89226 0.88256 1.21357 1.07993 1.02598 0.92227 1.21414 0.96117 0.92237 0.99226 1.21372 1.01930 0.98433 0.96580 1.21506 0.96360 0.98248 0.92109 1.21278 1.04901 0.93609 0.99518 1.18720 0.80327 0.88990 0.85534 1.90486 1.56985 1.51280 1.47470 1.21411 1.37919 1.01427 0.97462 0.89060 1.27232 0.94221 1.02855 0.95167 1.70139 1.32971 1.36355 1.02648 0.85088 0.78406 0.75877 0.79453 1.18396 1.19424 1.16773 0.72537 0.93065 0.86909 0.94776 0.92375 0.94074 0.90116 0.93544 0.92156 0.89975 0.84251 0.81909 0.82383 0.84748 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 19.25 74.32 1.43 -2.76 16 2 C -0.26 -8.60 11.87 31.12 0.37 -8.23 16 3 C 0.18 6.43 2.00 28.79 0.06 6.49 16 4 H 0.11 3.25 4.58 -2.39 -0.01 3.24 16 5 C -0.09 -2.99 4.34 30.59 0.13 -2.85 16 6 C -0.10 -3.25 2.87 -10.79 -0.03 -3.28 16 7 C -0.14 -3.76 9.19 71.98 0.66 -3.10 16 8 C -0.14 -3.53 8.97 71.98 0.65 -2.88 16 9 O -0.29 -14.18 7.32 -68.55 -0.50 -14.68 16 10 C 0.13 6.01 6.60 22.90 0.15 6.17 16 11 C -0.22 -7.88 8.67 22.34 0.19 -7.68 16 12 C -0.07 -2.10 10.03 22.34 0.22 -1.87 16 13 C -0.17 -5.15 10.02 22.25 0.22 -4.93 16 14 C -0.06 -2.64 9.43 22.53 0.21 -2.43 16 15 C -0.19 -9.85 5.90 -19.91 -0.12 -9.97 16 16 C 0.37 22.90 6.91 25.61 0.18 23.08 16 17 O -0.57 -40.14 13.72 16.17 0.22 -39.92 16 18 C -0.55 -32.34 8.86 23.67 0.21 -32.13 16 19 H 0.09 4.75 6.02 -2.91 -0.02 4.74 16 20 C 0.02 1.31 5.50 85.39 0.47 1.78 16 21 N -0.79 -49.05 11.73 21.88 0.26 -48.79 16 22 Si 0.99 41.00 29.56 68.60 2.03 43.03 16 23 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 24 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 25 H -0.24 -9.32 7.11 99.48 0.71 -8.62 16 26 H 0.26 4.24 7.80 -4.42 -0.03 4.20 16 27 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.03 1.47 7.69 -2.39 -0.02 1.45 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.67 8.14 -2.38 -0.02 1.66 16 33 H 0.05 1.20 6.48 -2.39 -0.02 1.18 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.14 4.20 5.66 -2.92 -0.02 4.18 16 37 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.13 5.33 6.20 -2.91 -0.02 5.31 16 40 H 0.28 15.47 8.29 -92.71 -0.77 14.70 16 Total: -1.00 -83.49 339.90 8.05 -75.43 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: 1.04 Total: 29.54 kcal Atomic # 6 Polarization: -49.61 SS G_CDS: 5.01 Total: -44.60 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.26 Total: -48.79 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -0.28 Total: -54.60 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -83.49 8.05 -75.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233524190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.495 kcal (2) G-P(sol) polarization free energy of solvation -83.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds