Wall clock time and date at job start Tue Mar 31 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46507 * 119.99785 * 2 1 4 4 C 1.39580 * 120.00229 * 179.97438 * 2 1 3 5 5 C 1.39013 * 119.95323 * 0.02562 * 4 2 1 6 6 C 1.37856 * 120.04463 * 180.02562 * 5 4 2 7 7 C 1.39407 * 119.95509 * 359.97438 * 6 5 4 8 8 C 1.48343 * 120.04590 * 180.02562 * 7 6 5 9 9 C 1.39028 * 120.41824 * 129.97686 * 8 7 6 10 10 C 1.40940 * 118.12604 * 180.02562 * 9 8 7 11 11 C 1.41376 * 120.57038 * 180.02562 * 10 9 8 12 12 H 1.08007 * 120.00103 * 155.67060 * 11 10 9 13 13 C 1.39888 * 120.00499 * 335.67746 * 11 10 9 14 14 N 1.30869 * 119.99377 * 343.55584 * 13 11 10 15 15 Si 1.86793 * 120.00628 * 163.56031 * 13 11 10 16 16 H 1.48497 * 109.47560 * 89.99490 * 15 13 11 17 17 H 1.48503 * 109.47409 * 209.99879 * 15 13 11 18 18 H 1.48508 * 109.47049 * 329.99346 * 15 13 11 19 19 C 1.40812 * 118.85945 * 359.97438 * 10 9 8 20 20 N 1.31505 * 120.69681 * 0.02562 * 19 10 9 21 21 C 1.32150 * 122.08163 * 0.02562 * 20 19 10 22 22 F 1.35103 * 119.46434 * 179.97438 * 21 20 19 23 23 C 1.39405 * 119.90652 * 0.27043 * 7 6 5 24 24 C 1.37859 * 119.95025 * 359.49659 * 23 7 6 25 25 H 1.09003 * 109.47045 * 269.99883 * 1 2 3 26 26 H 1.08996 * 109.46953 * 30.00563 * 1 2 3 27 27 H 1.09007 * 109.46551 * 150.00311 * 1 2 3 28 28 H 1.08998 * 109.47152 * 239.99889 * 3 2 1 29 29 H 1.08997 * 109.46598 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.46967 * 119.99987 * 3 2 1 31 31 H 1.08000 * 119.97663 * 359.97438 * 5 4 2 32 32 H 1.08007 * 120.02055 * 179.97438 * 6 5 4 33 33 H 1.07998 * 120.93585 * 0.02562 * 9 8 7 34 34 H 0.97004 * 119.99467 * 180.02562 * 14 13 11 35 35 H 1.07993 * 119.64709 * 180.29657 * 19 10 9 36 36 H 1.08000 * 120.02492 * 179.70074 * 23 7 6 37 37 H 1.08002 * 119.97303 * 180.20363 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1630 -1.2088 0.0005 5 6 1.4670 -2.4121 0.0005 6 6 2.1544 -3.6071 0.0016 7 6 3.5485 -3.6081 0.0021 8 6 4.2902 -4.8928 0.0027 9 6 5.3096 -5.1174 -0.9156 10 6 5.9821 -6.3553 -0.8722 11 6 7.0271 -6.6382 -1.7814 12 1 7.7820 -7.3674 -1.5266 13 6 7.0836 -5.9735 -3.0110 14 7 6.0291 -5.3444 -3.4636 15 14 8.6639 -5.9841 -4.0068 16 1 8.6653 -7.1544 -4.9209 17 1 8.7556 -4.7339 -4.8031 18 1 9.8273 -6.0722 -3.0881 19 6 5.5959 -7.3051 0.0930 20 7 4.6245 -7.0444 0.9403 21 6 3.9718 -5.8954 0.9279 22 9 2.9820 -5.6837 1.8226 23 6 4.2445 -2.4003 0.0073 24 6 3.5532 -1.2075 0.0014 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 2.8242 1.3266 -0.8900 29 1 1.4891 2.0972 -0.0005 30 1 2.8242 1.3266 0.8900 31 1 0.3870 -2.4108 0.0005 32 1 1.6133 -4.5418 0.0020 33 1 5.5787 -4.3646 -1.6417 34 1 6.0682 -4.8838 -4.3165 35 1 6.1057 -8.2559 0.1407 36 1 5.3245 -2.3989 0.0126 37 1 4.0920 -0.2716 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240915497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:44 Heat of formation + Delta-G solvation = 13.634853 kcal Electronic energy + Delta-G solvation = -21561.925348 eV Core-core repulsion = 18218.241953 eV Total energy + Delta-G solvation = -3343.683395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.47999 -39.32533 -38.15312 -36.01550 -34.13111 -31.77792 -30.82005 -30.25382 -28.18777 -28.09579 -25.47923 -24.59099 -22.40022 -21.73739 -21.27871 -19.99190 -17.62040 -17.01582 -16.52682 -15.94557 -15.41718 -15.30827 -15.01994 -14.73972 -14.51432 -14.03302 -13.42907 -13.31824 -13.14098 -12.71759 -12.53466 -12.33534 -12.21274 -12.06739 -11.96132 -11.90984 -11.71292 -11.45504 -11.17976 -11.14800 -10.69910 -10.45833 -10.10540 -9.57763 -9.44542 -8.49084 -8.38833 -8.28723 -7.66643 -6.97314 -6.78287 -4.58294 1.78064 1.90688 2.51848 2.78959 2.97435 2.99704 3.06819 3.22498 3.77469 4.29371 4.45877 4.93338 5.02599 5.17743 5.22105 5.33197 5.35502 5.45205 5.52229 5.55607 5.61716 5.63622 5.91791 5.94709 6.05486 6.23644 6.46973 6.57405 6.57759 6.73381 6.81155 6.96002 7.06305 7.19909 7.27070 7.40223 7.55556 7.69376 7.73185 7.83652 8.27621 8.53383 8.53973 9.28545 9.94715 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.004812 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.496723 B = 5817.261192 C = 7114.725991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.644 5.644 3 C 0.100 3.900 4 C 0.200 3.800 5 C -0.195 4.195 6 C -0.055 4.055 7 C -0.068 4.068 8 C -0.090 4.090 9 C -0.101 4.101 10 C 0.056 3.944 11 C -0.442 4.442 12 H 0.087 0.913 13 C 0.073 3.927 14 N -0.785 5.785 15 Si 0.914 3.086 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.258 1.258 19 C 0.007 3.993 20 N -0.491 5.491 21 C 0.161 3.839 22 F -0.146 7.146 23 C -0.059 4.059 24 C -0.194 4.194 25 H 0.043 0.957 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.286 0.714 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 11.369 1.080 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.358 5.358 3 C -0.043 4.043 4 C 0.100 3.900 5 C -0.217 4.217 6 C -0.074 4.074 7 C -0.071 4.071 8 C -0.094 4.094 9 C -0.126 4.126 10 C 0.051 3.949 11 C -0.472 4.472 12 H 0.105 0.895 13 C -0.146 4.146 14 N -0.409 5.409 15 Si 0.738 3.262 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.155 4.155 20 N -0.203 5.203 21 C 0.007 3.993 22 F -0.126 7.126 23 C -0.078 4.078 24 C -0.216 4.216 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.097 0.903 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.796 11.077 1.515 12.593 hybrid contribution 0.622 0.668 -1.038 1.382 sum -5.174 11.744 0.477 12.842 Atomic orbital electron populations 1.21591 0.80023 1.02303 1.00766 1.46185 1.04625 1.03162 1.81838 1.21517 0.96806 0.84924 1.01082 1.17762 0.91159 0.85275 0.95799 1.20508 0.99069 0.90967 1.11191 1.20957 0.93351 0.97148 0.95905 1.18543 0.92620 0.92224 1.03678 1.19137 0.99422 0.92930 0.97914 1.21745 0.95540 0.97642 0.97668 1.18491 0.92712 0.91008 0.92687 1.19541 1.08541 1.19999 0.99086 0.89511 1.26001 0.97544 0.93061 0.98037 1.69793 1.28400 1.24107 1.18590 0.86204 0.81728 0.78761 0.79557 1.19221 1.19912 1.18187 1.22273 0.96984 0.99173 0.97042 1.66248 1.08470 1.19895 1.25666 1.17578 0.94270 0.93187 0.94302 1.91393 1.59308 1.94642 1.67234 1.20963 0.99478 0.90913 0.96461 1.20465 0.91840 0.98146 1.11167 0.93827 0.92047 0.91357 0.93040 0.91392 0.93058 0.86435 0.86245 0.84355 0.90286 0.84567 0.86079 0.86561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 10.15 59.85 0.61 1.54 16 2 N -0.64 -8.04 3.41 -187.50 -0.64 -8.68 16 3 C 0.10 0.97 9.39 59.85 0.56 1.53 16 4 C 0.20 3.12 6.55 -83.76 -0.55 2.58 16 5 C -0.20 -3.20 9.19 -39.43 -0.36 -3.56 16 6 C -0.05 -1.05 8.86 -39.29 -0.35 -1.40 16 7 C -0.07 -1.43 5.33 -104.87 -0.56 -1.99 16 8 C -0.09 -2.16 5.48 -104.75 -0.57 -2.73 16 9 C -0.10 -2.51 8.28 -38.27 -0.32 -2.82 16 10 C 0.06 1.41 5.59 -106.71 -0.60 0.82 16 11 C -0.44 -10.82 9.08 -37.77 -0.34 -11.16 16 12 H 0.09 1.99 7.90 -52.48 -0.41 1.58 16 13 C 0.07 1.69 5.19 -17.34 -0.09 1.60 16 14 N -0.78 -18.97 10.90 55.54 0.61 -18.36 16 15 Si 0.91 17.28 29.59 -169.99 -5.03 12.25 16 16 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 17 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 18 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 19 C 0.01 0.16 10.96 -16.72 -0.18 -0.02 16 20 N -0.49 -12.56 10.33 -12.58 -0.13 -12.69 16 21 C 0.16 4.02 8.30 -16.72 -0.14 3.88 16 22 F -0.15 -3.49 15.90 2.25 0.04 -3.46 16 23 C -0.06 -1.11 9.52 -39.29 -0.37 -1.48 16 24 C -0.19 -3.14 9.29 -39.43 -0.37 -3.51 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 7.92 -51.93 -0.41 0.05 16 27 H 0.07 0.67 6.19 -51.93 -0.32 0.35 16 28 H 0.05 0.50 7.94 -51.93 -0.41 0.08 16 29 H 0.07 0.49 7.79 -51.93 -0.40 0.09 16 30 H 0.05 0.49 7.94 -51.93 -0.41 0.08 16 31 H 0.12 1.63 6.12 -52.49 -0.32 1.31 16 32 H 0.12 2.28 7.78 -52.48 -0.41 1.87 16 33 H 0.14 3.49 6.20 -52.49 -0.33 3.16 16 34 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 35 H 0.14 3.03 8.06 -52.49 -0.42 2.60 16 36 H 0.12 2.18 8.05 -52.49 -0.42 1.76 16 37 H 0.12 1.60 6.71 -52.49 -0.35 1.25 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -28.35 317.66 -8.19 -36.54 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.19 Total: 6.35 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -3.63 Total: -16.73 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.16 Total: -39.74 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.04 Total: -3.46 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.35 -8.19 -36.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240915497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.172 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds