Wall clock time and date at job start Tue Mar 31 2020 05:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46507 * 119.99785 * 2 1 4 4 C 1.39580 * 120.00229 * 179.97438 * 2 1 3 5 5 C 1.39013 * 119.95323 * 0.02562 * 4 2 1 6 6 C 1.37856 * 120.04463 * 180.02562 * 5 4 2 7 7 C 1.39407 * 119.95509 * 359.97438 * 6 5 4 8 8 C 1.48343 * 120.04590 * 180.02562 * 7 6 5 9 9 C 1.39028 * 120.41824 * 129.97686 * 8 7 6 10 10 C 1.40940 * 118.12604 * 180.02562 * 9 8 7 11 11 C 1.41376 * 120.57038 * 180.02562 * 10 9 8 12 12 H 1.08007 * 120.00103 * 155.67060 * 11 10 9 13 13 C 1.39888 * 120.00499 * 335.67746 * 11 10 9 14 14 N 1.30869 * 119.99377 * 343.55584 * 13 11 10 15 15 Si 1.86793 * 120.00628 * 163.56031 * 13 11 10 16 16 H 1.48497 * 109.47560 * 89.99490 * 15 13 11 17 17 H 1.48503 * 109.47409 * 209.99879 * 15 13 11 18 18 H 1.48508 * 109.47049 * 329.99346 * 15 13 11 19 19 C 1.40812 * 118.85945 * 359.97438 * 10 9 8 20 20 N 1.31505 * 120.69681 * 0.02562 * 19 10 9 21 21 C 1.32150 * 122.08163 * 0.02562 * 20 19 10 22 22 F 1.35103 * 119.46434 * 179.97438 * 21 20 19 23 23 C 1.39405 * 119.90652 * 0.27043 * 7 6 5 24 24 C 1.37859 * 119.95025 * 359.49659 * 23 7 6 25 25 H 1.09003 * 109.47045 * 269.99883 * 1 2 3 26 26 H 1.08996 * 109.46953 * 30.00563 * 1 2 3 27 27 H 1.09007 * 109.46551 * 150.00311 * 1 2 3 28 28 H 1.08998 * 109.47152 * 239.99889 * 3 2 1 29 29 H 1.08997 * 109.46598 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.46967 * 119.99987 * 3 2 1 31 31 H 1.08000 * 119.97663 * 359.97438 * 5 4 2 32 32 H 1.08007 * 120.02055 * 179.97438 * 6 5 4 33 33 H 1.07998 * 120.93585 * 0.02562 * 9 8 7 34 34 H 0.97004 * 119.99467 * 180.02562 * 14 13 11 35 35 H 1.07993 * 119.64709 * 180.29657 * 19 10 9 36 36 H 1.08000 * 120.02492 * 179.70074 * 23 7 6 37 37 H 1.08002 * 119.97303 * 180.20363 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1630 -1.2088 0.0005 5 6 1.4670 -2.4121 0.0005 6 6 2.1544 -3.6071 0.0016 7 6 3.5485 -3.6081 0.0021 8 6 4.2902 -4.8928 0.0027 9 6 5.3096 -5.1174 -0.9156 10 6 5.9821 -6.3553 -0.8722 11 6 7.0271 -6.6382 -1.7814 12 1 7.7820 -7.3674 -1.5266 13 6 7.0836 -5.9735 -3.0110 14 7 6.0291 -5.3444 -3.4636 15 14 8.6639 -5.9841 -4.0068 16 1 8.6653 -7.1544 -4.9209 17 1 8.7556 -4.7339 -4.8031 18 1 9.8273 -6.0722 -3.0881 19 6 5.5959 -7.3051 0.0930 20 7 4.6245 -7.0444 0.9403 21 6 3.9718 -5.8954 0.9279 22 9 2.9820 -5.6837 1.8226 23 6 4.2445 -2.4003 0.0073 24 6 3.5532 -1.2075 0.0014 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 2.8242 1.3266 -0.8900 29 1 1.4891 2.0972 -0.0005 30 1 2.8242 1.3266 0.8900 31 1 0.3870 -2.4108 0.0005 32 1 1.6133 -4.5418 0.0020 33 1 5.5787 -4.3646 -1.6417 34 1 6.0682 -4.8838 -4.3165 35 1 6.1057 -8.2559 0.1407 36 1 5.3245 -2.3989 0.0126 37 1 4.0920 -0.2716 0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240915497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:43 Heat of formation + Delta-G solvation = -0.691065 kcal Electronic energy + Delta-G solvation = -21562.546567 eV Core-core repulsion = 18218.241953 eV Total energy + Delta-G solvation = -3344.304613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.37553 -40.71466 -39.86642 -37.20855 -35.97806 -33.38108 -32.18693 -32.03626 -29.63036 -28.96442 -27.35564 -25.82037 -24.05884 -23.24942 -22.87740 -21.40780 -19.33470 -18.51335 -18.18895 -17.72060 -16.97252 -16.69015 -16.36973 -16.17393 -15.90167 -15.41368 -14.99242 -14.62125 -14.39734 -14.28716 -14.10936 -13.85105 -13.60645 -13.44498 -13.40760 -13.16273 -13.00911 -12.86374 -12.75085 -12.67953 -12.25869 -11.81684 -11.74892 -11.21360 -10.91597 -10.28201 -10.05817 -9.85736 -9.48072 -8.75778 -8.04426 -6.48697 0.19322 0.54052 0.76016 1.01362 1.42383 1.49921 1.58450 2.18366 2.27132 2.58610 2.94953 3.31475 3.51582 3.92316 3.95507 4.06402 4.21345 4.30420 4.43121 4.50200 4.54994 4.66564 4.67529 4.81215 4.83487 4.90340 4.91413 4.98332 5.06516 5.14311 5.17104 5.33426 5.47165 5.61520 5.76359 5.85049 5.88641 5.96651 6.39418 6.39750 6.55188 6.64967 6.67151 7.35542 8.18599 Molecular weight = 286.12amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.004812 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.496723 B = 5817.261192 C = 7114.725991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.643 5.643 3 C 0.091 3.909 4 C 0.209 3.791 5 C -0.197 4.197 6 C -0.065 4.065 7 C -0.111 4.111 8 C -0.078 4.078 9 C -0.121 4.121 10 C 0.037 3.963 11 C -0.462 4.462 12 H 0.097 0.903 13 C 0.036 3.964 14 N -0.811 5.811 15 Si 0.990 3.010 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.253 1.253 19 C -0.009 4.009 20 N -0.504 5.504 21 C 0.130 3.870 22 F -0.145 7.145 23 C -0.065 4.065 24 C -0.195 4.195 25 H 0.053 0.947 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.144 0.856 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.295 0.705 35 H 0.155 0.845 36 H 0.118 0.882 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.408 13.734 0.102 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.354 5.354 3 C -0.051 4.051 4 C 0.107 3.893 5 C -0.219 4.219 6 C -0.084 4.084 7 C -0.114 4.114 8 C -0.082 4.082 9 C -0.147 4.147 10 C 0.032 3.968 11 C -0.490 4.490 12 H 0.115 0.885 13 C -0.182 4.182 14 N -0.435 5.435 15 Si 0.810 3.190 16 H -0.185 1.185 17 H -0.191 1.191 18 H -0.177 1.177 19 C -0.171 4.171 20 N -0.216 5.216 21 C -0.023 4.023 22 F -0.125 7.125 23 C -0.084 4.084 24 C -0.217 4.217 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.127 0.873 33 H 0.149 0.851 34 H 0.106 0.894 35 H 0.172 0.828 36 H 0.136 0.864 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.928 13.480 0.556 14.737 hybrid contribution 0.536 0.087 -0.765 0.938 sum -5.391 13.568 -0.209 14.601 Atomic orbital electron populations 1.21834 0.78214 1.03645 1.01782 1.46541 1.05988 1.02846 1.80062 1.21762 0.97669 0.84380 1.01301 1.17912 0.91218 0.86504 0.93690 1.20710 1.00327 0.90269 1.10578 1.20944 0.92749 0.98012 0.96653 1.18553 0.93440 0.91648 1.07719 1.19363 0.98562 0.93917 0.96348 1.21708 0.96930 0.97633 0.98406 1.18830 0.93283 0.91409 0.93270 1.19911 1.08584 1.20841 0.99699 0.88474 1.26917 1.00736 0.91893 0.98611 1.69848 1.30412 1.23922 1.19298 0.85061 0.77031 0.79090 0.77818 1.18476 1.19104 1.17693 1.22558 0.97333 0.99982 0.97214 1.66215 1.08843 1.20446 1.26077 1.17804 0.95205 0.93858 0.95394 1.91370 1.59242 1.94672 1.67192 1.21000 0.99499 0.91201 0.96706 1.20680 0.92408 0.98122 1.10466 0.92887 0.89255 0.91574 0.92833 0.88389 0.92760 0.83871 0.87336 0.85125 0.89351 0.82772 0.86404 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.37 10.15 127.77 1.30 2.66 16 2 N -0.64 -13.85 3.41 -747.14 -2.54 -16.40 16 3 C 0.09 1.41 9.39 127.77 1.20 2.61 16 4 C 0.21 6.13 6.55 38.28 0.25 6.38 16 5 C -0.20 -6.23 9.19 22.37 0.21 -6.02 16 6 C -0.06 -2.53 8.86 22.46 0.20 -2.33 16 7 C -0.11 -4.81 5.33 -20.02 -0.11 -4.92 16 8 C -0.08 -3.93 5.48 -19.95 -0.11 -4.04 16 9 C -0.12 -6.32 8.28 23.12 0.19 -6.13 16 10 C 0.04 1.93 5.59 -21.22 -0.12 1.81 16 11 C -0.46 -22.86 9.08 23.44 0.21 -22.65 16 12 H 0.10 4.46 7.90 -2.91 -0.02 4.44 16 13 C 0.04 1.66 5.19 85.24 0.44 2.10 16 14 N -0.81 -39.48 10.90 21.82 0.24 -39.24 16 15 Si 0.99 34.54 29.59 68.60 2.03 36.57 16 16 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 17 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 18 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 19 C -0.01 -0.48 10.96 85.37 0.94 0.46 16 20 N -0.50 -26.80 10.33 -193.71 -2.00 -28.81 16 21 C 0.13 6.84 8.30 85.09 0.71 7.54 16 22 F -0.14 -7.23 15.90 44.97 0.72 -6.51 16 23 C -0.07 -2.48 9.52 22.46 0.21 -2.26 16 24 C -0.19 -6.04 9.29 22.37 0.21 -5.83 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.93 7.92 -2.39 -0.02 0.91 16 27 H 0.07 1.08 6.19 -2.38 -0.01 1.06 16 28 H 0.05 0.84 7.94 -2.39 -0.02 0.82 16 29 H 0.10 0.96 7.79 -2.39 -0.02 0.94 16 30 H 0.05 0.84 7.94 -2.39 -0.02 0.82 16 31 H 0.14 3.68 6.12 -2.91 -0.02 3.67 16 32 H 0.11 4.35 7.78 -2.91 -0.02 4.32 16 33 H 0.13 6.89 6.20 -2.91 -0.02 6.87 16 34 H 0.30 12.92 8.30 -92.71 -0.77 12.15 16 35 H 0.16 7.04 8.06 -2.91 -0.02 7.02 16 36 H 0.12 4.39 8.05 -2.91 -0.02 4.37 16 37 H 0.14 3.58 6.71 -2.91 -0.02 3.56 16 Total: -1.00 -62.74 317.66 5.26 -57.48 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 1.09 Total: 27.52 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 5.73 Total: -30.61 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -4.31 Total: -84.44 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.72 Total: -6.51 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Total: -62.74 5.26 -57.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240915497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.789 kcal (2) G-P(sol) polarization free energy of solvation -62.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds