Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 120.00085 * 2 1 4 4 H 1.48494 * 109.47068 * 269.99714 * 3 2 1 5 5 H 1.48498 * 109.46734 * 30.00018 * 3 2 1 6 6 H 1.48496 * 109.46876 * 149.99807 * 3 2 1 7 7 C 1.37876 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99909 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99987 * 180.02562 * 7 2 1 10 10 N 1.46905 * 109.46769 * 185.14485 * 9 7 2 11 11 C 1.46897 * 110.99895 * 75.92620 * 10 9 7 12 12 C 1.53000 * 109.47230 * 189.99542 * 11 10 9 13 13 C 1.50703 * 109.47026 * 179.97438 * 12 11 10 14 14 C 1.38664 * 120.42019 * 270.25459 * 13 12 11 15 15 C 1.38637 * 118.41776 * 180.24532 * 14 13 12 16 16 C 1.38218 * 119.16215 * 359.75163 * 15 14 13 17 17 N 1.31859 * 120.76686 * 359.97438 * 16 15 14 18 18 C 1.31881 * 121.72142 * 359.97438 * 17 16 15 19 19 C 1.46899 * 110.99640 * 199.87628 * 10 9 7 20 20 C 1.50702 * 109.46862 * 71.97560 * 19 10 9 21 21 C 1.34518 * 125.79141 * 89.99934 * 20 19 10 22 22 C 1.41380 * 106.84005 * 180.02562 * 21 20 19 23 23 C 1.34513 * 106.84129 * 359.97438 * 22 21 20 24 24 O 1.34300 * 125.78868 * 269.68879 * 20 19 10 25 25 H 0.97006 * 119.99729 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46679 * 65.15345 * 9 7 2 27 27 H 1.08995 * 109.46999 * 305.14829 * 9 7 2 28 28 H 1.09003 * 109.47165 * 69.99393 * 11 10 9 29 29 H 1.08998 * 109.47305 * 310.00292 * 11 10 9 30 30 H 1.09004 * 109.46731 * 60.00487 * 12 11 10 31 31 H 1.08995 * 109.47180 * 299.99949 * 12 11 10 32 32 H 1.07998 * 120.79560 * 359.97026 * 14 13 12 33 33 H 1.08007 * 120.41787 * 179.72863 * 15 14 13 34 34 H 1.08000 * 119.61934 * 180.02562 * 16 15 14 35 35 H 1.08002 * 119.61717 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.46939 * 191.96887 * 19 10 9 37 37 H 1.08993 * 109.47749 * 311.97284 * 19 10 9 38 38 H 1.07997 * 126.57500 * 359.95693 * 21 20 19 39 39 H 1.07997 * 126.57855 * 179.97438 * 22 21 20 40 40 H 1.08004 * 125.78874 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5735 -0.1249 11 6 3.8628 -3.0582 -1.5046 12 6 4.1443 -4.5615 -1.5477 13 6 4.0016 -5.0589 -2.9631 14 6 2.7754 -5.5083 -3.4291 15 6 2.6924 -5.9616 -4.7366 16 6 3.8253 -5.9459 -5.5282 17 7 4.9741 -5.5062 -5.0530 18 6 5.0897 -5.0668 -3.8149 19 6 5.3925 -2.6817 0.3340 20 6 5.4374 -2.5563 1.8351 21 6 5.3458 -3.5718 2.7126 22 6 5.4335 -3.0055 4.0050 23 6 5.5741 -1.6780 3.8402 24 8 5.5816 -1.4123 2.5237 25 1 -0.4850 0.8401 -0.0004 26 1 3.8745 -0.7629 0.9330 27 1 3.8752 -0.6019 -0.8397 28 1 4.5735 -2.5370 -2.1460 29 1 2.8488 -2.8682 -1.8565 30 1 3.4334 -5.0827 -0.9064 31 1 5.1582 -4.7515 -1.1959 32 1 1.9067 -5.5094 -2.7875 33 1 1.7543 -6.3229 -5.1316 34 1 3.7690 -6.2969 -6.5480 35 1 6.0473 -4.7146 -3.4608 36 1 5.7984 -3.6490 0.0380 37 1 5.9863 -1.8857 -0.1150 38 1 5.2269 -4.6186 2.4752 39 1 5.3951 -3.5369 4.9444 40 1 5.6695 -0.9497 4.6320 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176295350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = 35.439647 kcal Electronic energy + Delta-G solvation = -21896.519087 eV Core-core repulsion = 18677.241524 eV Total energy + Delta-G solvation = -3219.277563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.35769 -41.07817 -38.80475 -35.10927 -34.49287 -33.79109 -32.85114 -31.67018 -30.45453 -28.53466 -26.27543 -24.64328 -24.43979 -22.75900 -22.45753 -21.92249 -21.00207 -19.05422 -18.20830 -17.94980 -17.28954 -17.13794 -16.84734 -16.18977 -15.86197 -15.76428 -15.30203 -14.81787 -14.65737 -14.55417 -14.13410 -13.96685 -13.87594 -13.60338 -13.50904 -13.23383 -13.05484 -12.86024 -12.66881 -12.56018 -12.11001 -11.88958 -11.73411 -11.47518 -10.81301 -10.70230 -10.66979 -10.36026 -9.83733 -9.33855 -9.08149 -8.30424 -6.31831 0.21161 0.37875 0.90112 1.28489 1.31213 1.42135 1.82501 2.25725 2.30754 2.87815 3.03424 3.22894 3.62564 3.85728 3.92756 3.99008 4.11495 4.13341 4.20515 4.26308 4.30048 4.39053 4.45740 4.49593 4.61498 4.76742 4.82051 4.90332 4.94848 5.00549 5.09559 5.14712 5.21135 5.26708 5.31240 5.49030 5.55319 5.74994 5.82972 5.92372 6.30100 6.36634 6.56070 6.73982 7.05391 7.31202 8.86157 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.011422 B = 0.005317 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.772475 B = 5265.124345 C = 7062.183569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.257 1.257 7 C -0.507 4.507 8 H 0.041 0.959 9 C 0.174 3.826 10 N -0.534 5.534 11 C 0.075 3.925 12 C -0.061 4.061 13 C -0.132 4.132 14 C -0.085 4.085 15 C -0.169 4.169 16 C 0.080 3.920 17 N -0.510 5.510 18 C 0.090 3.910 19 C 0.126 3.874 20 C -0.019 4.019 21 C -0.204 4.204 22 C -0.223 4.223 23 C -0.057 4.057 24 O -0.204 6.204 25 H 0.266 0.734 26 H 0.023 0.977 27 H -0.013 1.013 28 H 0.033 0.967 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.137 0.863 33 H 0.159 0.841 34 H 0.179 0.821 35 H 0.168 0.832 36 H 0.133 0.867 37 H 0.044 0.956 38 H 0.161 0.839 39 H 0.171 0.829 40 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.454 -10.653 -2.055 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.185 4.185 3 Si 0.760 3.240 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.047 3.953 10 N -0.258 5.258 11 C -0.052 4.052 12 C -0.099 4.099 13 C -0.134 4.134 14 C -0.111 4.111 15 C -0.188 4.188 16 C -0.077 4.077 17 N -0.219 5.219 18 C -0.067 4.067 19 C -0.001 4.001 20 C -0.069 4.069 21 C -0.223 4.223 22 C -0.241 4.241 23 C -0.124 4.124 24 O -0.101 6.101 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.005 0.995 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.155 0.845 33 H 0.177 0.823 34 H 0.196 0.804 35 H 0.186 0.814 36 H 0.150 0.850 37 H 0.062 0.938 38 H 0.179 0.821 39 H 0.188 0.812 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 12.787 -10.551 -2.449 16.758 hybrid contribution -0.737 1.402 0.339 1.620 sum 12.050 -9.149 -2.110 15.276 Atomic orbital electron populations 1.70034 1.07844 1.27908 1.52802 1.25728 0.95510 1.02627 0.94660 0.85878 0.79454 0.79567 0.79110 1.19188 1.20460 1.18076 1.21195 0.90857 0.93156 1.49294 0.94118 1.19932 0.94504 0.86005 0.94882 1.61842 1.18099 1.23260 1.22604 1.21918 1.00819 0.94869 0.87615 1.20488 1.03923 0.93821 0.91689 1.20936 0.94843 0.99967 0.97693 1.21845 0.97662 0.95019 0.96577 1.22444 1.01316 1.00735 0.94348 1.23210 0.87784 0.95556 1.01108 1.67698 1.28154 1.10904 1.15154 1.22923 0.99166 0.95729 0.88872 1.20738 0.90153 1.03660 0.85575 1.22597 1.05685 0.83386 0.95273 1.21800 1.07601 1.00623 0.92322 1.22143 1.08211 0.94417 0.99371 1.24708 1.06180 0.98698 0.82810 1.84021 1.71081 1.35404 1.19552 0.92492 0.95934 0.99539 0.94899 0.92685 0.90359 0.88568 0.84511 0.82328 0.80377 0.81443 0.84954 0.93777 0.82092 0.81181 0.75471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.38 13.96 21.45 0.30 -59.08 16 2 C 0.01 0.72 5.47 84.65 0.46 1.18 16 3 Si 0.94 45.18 27.37 68.60 1.88 47.06 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.26 -11.93 6.69 99.48 0.67 -11.26 16 7 C -0.51 -29.49 9.12 25.60 0.23 -29.26 16 8 H 0.04 2.63 8.06 -2.91 -0.02 2.60 16 9 C 0.17 8.45 3.65 85.56 0.31 8.76 16 10 N -0.53 -21.00 4.37 -905.38 -3.96 -24.96 16 11 C 0.08 2.59 4.76 86.30 0.41 3.00 16 12 C -0.06 -1.57 5.33 29.85 0.16 -1.41 16 13 C -0.13 -3.30 5.15 -19.77 -0.10 -3.41 16 14 C -0.08 -2.08 9.86 22.47 0.22 -1.85 16 15 C -0.17 -3.48 10.11 22.36 0.23 -3.26 16 16 C 0.08 1.70 11.18 84.68 0.95 2.64 16 17 N -0.51 -13.02 10.36 -195.84 -2.03 -15.05 16 18 C 0.09 2.17 10.86 84.67 0.92 3.09 16 19 C 0.13 3.96 5.37 85.56 0.46 4.42 16 20 C -0.02 -0.66 6.12 24.83 0.15 -0.51 16 21 C -0.20 -6.08 10.81 22.19 0.24 -5.84 16 22 C -0.22 -6.01 10.91 22.19 0.24 -5.77 16 23 C -0.06 -1.62 12.09 66.97 0.81 -0.81 16 24 O -0.20 -7.34 9.80 -2.45 -0.02 -7.36 16 25 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 26 H 0.02 1.15 5.88 -2.39 -0.01 1.14 16 27 H -0.01 -0.63 7.14 -2.39 -0.02 -0.65 16 28 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 29 H 0.05 2.29 7.45 -2.39 -0.02 2.27 16 30 H 0.08 2.13 8.10 -2.38 -0.02 2.11 16 31 H 0.10 1.96 6.24 -2.39 -0.01 1.95 16 32 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 33 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 36 H 0.13 3.11 5.94 -2.39 -0.01 3.10 16 37 H 0.04 1.37 8.05 -2.39 -0.02 1.35 16 38 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 39 H 0.17 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.23 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -73.48 337.25 2.85 -70.63 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.99 Total: 17.78 kcal Atomic # 6 Polarization: -34.71 SS G_CDS: 5.69 Total: -29.02 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -5.69 Total: -99.09 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.02 Total: -7.36 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -73.48 2.85 -70.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176295350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.070 kcal (2) G-P(sol) polarization free energy of solvation -73.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds