Wall clock time and date at job start Tue Mar 31 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 120.00183 * 2 1 4 4 H 1.48497 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46832 * 300.00351 * 3 2 1 6 6 H 1.48499 * 109.46925 * 59.99870 * 3 2 1 7 7 C 1.38806 * 120.00084 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99749 * 359.97438 * 7 2 1 10 10 C 1.80995 * 99.99861 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47223 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47493 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47450 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99890 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.47401 * 34.99821 * 14 13 12 16 16 C 1.53002 * 109.46860 * 274.99873 * 14 13 12 17 17 C 1.53006 * 109.46711 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47445 * 59.99695 * 17 16 14 19 19 C 1.53002 * 109.47092 * 300.00075 * 18 17 16 20 20 C 1.53000 * 109.46769 * 155.00113 * 14 13 12 21 21 H 1.08992 * 109.47399 * 59.99697 * 20 14 13 22 22 C 1.50702 * 109.46903 * 299.99432 * 20 14 13 23 23 N 1.34774 * 119.99762 * 180.02562 * 22 20 14 24 24 O 1.21279 * 120.00190 * 0.02562 * 22 20 14 25 25 H 0.97000 * 119.99810 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47525 * 60.00377 * 10 9 7 27 27 H 1.09003 * 109.47412 * 299.99703 * 10 9 7 28 28 H 1.09004 * 109.46733 * 59.99658 * 11 10 9 29 29 H 1.08994 * 109.47091 * 300.00524 * 11 10 9 30 30 H 1.09002 * 109.46846 * 59.99840 * 12 11 10 31 31 H 1.09005 * 109.47132 * 300.00585 * 12 11 10 32 32 H 1.00901 * 110.99385 * 303.95419 * 13 12 11 33 33 H 1.09002 * 109.47075 * 299.99593 * 16 14 13 34 34 H 1.08996 * 109.47407 * 60.00550 * 16 14 13 35 35 H 1.09001 * 109.46726 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.46589 * 299.99365 * 17 16 14 37 37 H 1.09002 * 109.47045 * 59.99942 * 18 17 16 38 38 H 1.09000 * 109.47140 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.46497 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.47067 * 299.99853 * 19 18 17 41 41 H 0.97004 * 120.00087 * 359.97438 * 23 22 20 42 42 H 0.96997 * 119.99962 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9793 -5.3243 -0.0012 12 6 3.1512 -6.3078 -0.0018 13 7 2.6361 -7.6835 -0.0031 14 6 3.7358 -8.6574 -0.0031 15 1 4.5657 -8.2685 0.5871 16 6 4.2018 -8.9004 -1.4401 17 6 5.3468 -9.9153 -1.4401 18 6 4.8610 -11.2324 -0.8318 19 6 4.3951 -10.9893 0.6051 20 6 3.2505 -9.9747 0.6053 21 1 2.4207 -10.3635 0.0152 22 6 2.7916 -9.7352 2.0207 23 7 2.3198 -10.7597 2.7585 24 8 2.8469 -8.6207 2.4958 25 1 -0.4850 0.8401 0.0004 26 1 3.1244 -3.7314 0.8894 27 1 3.1244 -3.7314 -0.8906 28 1 1.3708 -5.4840 -0.8914 29 1 1.3704 -5.4846 0.8885 30 1 3.7600 -6.1481 0.8882 31 1 3.7598 -6.1472 -0.8918 32 1 2.0165 -7.8382 0.7781 33 1 3.3720 -9.2894 -2.0302 34 1 4.5476 -7.9620 -1.8735 35 1 5.6784 -10.0887 -2.4639 36 1 6.1767 -9.5266 -0.8499 37 1 4.0311 -11.6210 -1.4220 38 1 5.6766 -11.9555 -0.8323 39 1 4.0494 -11.9278 1.0386 40 1 5.2250 -10.6007 1.1954 41 1 2.2752 -11.6510 2.3784 42 1 2.0241 -10.6055 3.6693 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184834368.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:19 Heat of formation + Delta-G solvation = -76.988359 kcal Electronic energy + Delta-G solvation = -20427.079619 eV Core-core repulsion = 17338.370763 eV Total energy + Delta-G solvation = -3088.708856 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64449 -37.98763 -35.80090 -34.00077 -32.44623 -32.29161 -31.17666 -28.89213 -25.63072 -24.56456 -24.11396 -21.81458 -21.05243 -20.77608 -19.84928 -17.80732 -17.35454 -16.95513 -15.83925 -15.48998 -15.10300 -14.84245 -14.73153 -14.56926 -14.19433 -14.03022 -13.61439 -13.33043 -12.92721 -12.68708 -12.32896 -12.30936 -11.71310 -11.51644 -11.45589 -11.20096 -11.02629 -11.01208 -10.89059 -10.70798 -10.56049 -10.41245 -10.19258 -10.00712 -9.96989 -9.40022 -8.99126 -8.22470 -8.18907 -6.42787 -6.15227 -3.84157 2.33714 3.19499 3.26111 3.28074 3.35297 3.66279 4.12682 4.24098 4.30634 4.35431 4.66613 4.83898 4.88308 4.98201 5.08075 5.15473 5.19050 5.20537 5.40225 5.47603 5.53642 5.56176 5.68004 5.74566 5.77052 5.83039 5.90274 5.95480 6.04093 6.11290 6.23541 6.30330 6.44737 6.50610 6.77588 6.89729 6.96911 7.24435 7.59744 7.68468 7.97028 8.44841 9.31025 10.93111 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.028919 B = 0.002828 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.999568 B = 9899.087103 C =10466.617331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.513 4.513 8 H 0.072 0.928 9 S -0.135 6.135 10 C -0.110 4.110 11 C -0.094 4.094 12 C 0.068 3.932 13 N -0.684 5.684 14 C 0.107 3.893 15 H 0.048 0.952 16 C -0.109 4.109 17 C -0.123 4.123 18 C -0.117 4.117 19 C -0.108 4.108 20 C -0.112 4.112 21 H 0.107 0.893 22 C 0.518 3.482 23 N -0.856 5.856 24 O -0.535 6.535 25 H 0.266 0.734 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.347 0.653 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.400 0.600 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.700 -27.798 0.511 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.139 4.139 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.662 4.662 8 H 0.090 0.910 9 S 0.094 5.906 10 C -0.260 4.260 11 C -0.133 4.133 12 C -0.062 4.062 13 N -0.318 5.318 14 C -0.003 4.003 15 H 0.066 0.934 16 C -0.147 4.147 17 C -0.161 4.161 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.133 4.133 21 H 0.125 0.875 22 C 0.302 3.698 23 N -0.419 5.419 24 O -0.411 6.411 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.168 0.832 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.229 0.771 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 7.430 -27.092 -0.016 28.093 hybrid contribution 1.976 0.960 1.209 2.508 sum 9.407 -26.133 1.194 27.800 Atomic orbital electron populations 1.70043 1.05903 1.27079 1.47601 1.25020 0.95079 0.99059 0.94755 0.86116 0.79670 0.81935 0.77810 1.19625 1.20611 1.20626 1.22749 0.94558 0.90866 1.57993 0.90969 1.84613 1.09842 0.99378 1.96810 1.23216 1.02652 0.97434 1.02648 1.21215 0.97135 0.92086 1.02826 1.21964 0.97044 0.87234 0.99971 1.60697 1.17912 1.02676 1.50545 1.21245 0.93656 0.89788 0.95647 0.93354 1.21567 0.97870 0.99228 0.96019 1.21583 0.98352 0.95164 1.00972 1.21532 1.01073 0.97753 0.95123 1.21503 0.97238 0.97544 0.98301 1.21583 1.00313 0.98676 0.92777 0.87520 1.20806 0.76204 0.84516 0.88228 1.43903 1.68018 1.11817 1.18163 1.90783 1.54292 1.23127 1.72896 0.92453 0.92369 0.92210 0.90999 0.91933 0.95228 0.91571 0.83173 0.91087 0.91393 0.91596 0.92028 0.91500 0.91631 0.91416 0.91352 0.77148 0.76808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.87 13.22 55.49 0.73 -26.14 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 22.28 29.55 -169.99 -5.02 17.25 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.51 -15.39 9.50 30.94 0.29 -15.09 16 8 H 0.07 2.10 7.80 -52.49 -0.41 1.70 16 9 S -0.13 -3.74 21.44 -107.50 -2.30 -6.04 16 10 C -0.11 -2.44 5.67 37.16 0.21 -2.23 16 11 C -0.09 -1.75 5.48 -26.73 -0.15 -1.90 16 12 C 0.07 1.09 5.48 -3.83 -0.02 1.07 16 13 N -0.68 -9.54 6.15 -106.72 -0.66 -10.20 16 14 C 0.11 1.20 1.53 -67.71 -0.10 1.09 16 15 H 0.05 0.63 7.76 -51.93 -0.40 0.22 16 16 C -0.11 -1.04 5.43 -26.73 -0.15 -1.18 16 17 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 18 C -0.12 -0.65 5.92 -26.73 -0.16 -0.81 16 19 C -0.11 -0.63 5.10 -26.75 -0.14 -0.77 16 20 C -0.11 -0.92 2.20 -91.79 -0.20 -1.13 16 21 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 22 C 0.52 5.14 6.89 -10.99 -0.08 5.06 16 23 N -0.86 -4.97 8.77 31.22 0.27 -4.70 16 24 O -0.54 -7.94 15.11 5.56 0.08 -7.86 16 25 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.06 1.29 8.14 -51.92 -0.42 0.87 16 27 H 0.06 1.29 8.14 -51.91 -0.42 0.87 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.03 0.50 8.06 -51.93 -0.42 0.08 16 31 H 0.07 1.01 7.44 -51.93 -0.39 0.62 16 32 H 0.35 5.19 6.01 -39.29 -0.24 4.95 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.25 7.56 -51.93 -0.39 -0.14 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.40 1.05 8.25 -40.82 -0.34 0.72 16 42 H 0.40 2.16 8.93 -40.82 -0.36 1.80 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -34.93 347.29 -9.52 -44.45 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.12 Total: 2.97 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -0.74 Total: -14.97 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.35 Total: -41.03 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.08 Total: -7.86 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.30 Total: -6.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.93 -9.52 -44.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184834368.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.542 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds