Wall clock time and date at job start Tue Mar 31 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37715 * 119.67302 * 2 1 4 4 C 1.39186 * 119.80634 * 180.02562 * 3 2 1 5 5 N 1.37484 * 133.18378 * 179.97438 * 4 3 2 6 6 H 0.96996 * 125.60960 * 359.97438 * 5 4 3 7 7 C 1.38151 * 108.78813 * 179.97438 * 5 4 3 8 8 C 1.47058 * 125.42675 * 180.02562 * 7 5 4 9 9 O 1.21653 * 119.99985 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99966 * 359.75185 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27718 * 10 8 7 12 12 H 1.08999 * 109.46902 * 324.99605 * 11 10 8 13 13 C 1.52995 * 109.47009 * 84.99752 * 11 10 8 14 14 C 1.50700 * 109.46700 * 204.99839 * 11 10 8 15 15 H 1.07996 * 120.00450 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99855 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00247 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99852 * 359.97438 * 16 14 11 19 19 H 1.48497 * 109.47458 * 90.00242 * 18 16 14 20 20 H 1.48500 * 109.46835 * 210.00216 * 18 16 14 21 21 H 1.48499 * 109.47044 * 329.99990 * 18 16 14 22 22 C 1.35863 * 109.14657 * 0.26645 * 7 5 4 23 23 C 1.40889 * 119.43000 * 359.94080 * 4 3 2 24 24 C 1.40064 * 119.66606 * 0.02562 * 23 4 3 25 25 C 1.50702 * 120.08279 * 179.97438 * 24 23 4 26 26 C 1.36470 * 119.83306 * 359.97438 * 24 23 4 27 27 H 1.09002 * 109.47564 * 270.02389 * 1 2 3 28 28 H 1.09006 * 109.47254 * 30.02385 * 1 2 3 29 29 H 1.09004 * 109.47010 * 150.02094 * 1 2 3 30 30 H 1.08001 * 120.09766 * 0.02562 * 3 2 1 31 31 H 0.97000 * 119.99736 * 0.26993 * 10 8 7 32 32 H 1.08999 * 109.47409 * 60.00164 * 13 11 10 33 33 H 1.09007 * 109.46569 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.47135 * 299.99446 * 13 11 10 35 35 H 0.96990 * 120.00359 * 179.97438 * 17 16 14 36 36 H 1.08002 * 126.13544 * 179.73952 * 22 7 5 37 37 H 1.09005 * 109.46959 * 89.99699 * 25 24 23 38 38 H 1.08998 * 109.47208 * 209.99980 * 25 24 23 39 39 H 1.08999 * 109.47167 * 330.00011 * 25 24 23 40 40 H 1.08002 * 119.69482 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1966 0.0000 4 6 3.5806 1.1998 -0.0005 5 7 4.5191 2.2045 -0.0011 6 1 4.3284 3.1555 -0.0016 7 6 5.7786 1.6368 -0.0009 8 6 7.0482 2.3790 -0.0008 9 8 8.1050 1.7764 -0.0011 10 7 7.0409 3.7267 -0.0061 11 6 8.3056 4.4660 -0.0121 12 1 9.0456 3.9250 0.5776 13 6 8.8057 4.6092 -1.4509 14 6 8.0909 5.8336 0.5835 15 1 7.1103 6.1232 0.9314 16 6 9.1460 6.7154 0.6835 17 7 8.9586 7.9091 1.2028 18 14 10.8419 6.2148 0.0811 19 1 10.9894 6.5875 -1.3488 20 1 11.8782 6.9126 0.8839 21 1 11.0064 4.7464 0.2295 22 6 5.6575 0.2836 -0.0061 23 6 4.2757 -0.0257 0.0002 24 6 3.5592 -1.2291 0.0009 25 6 4.2932 -2.5453 0.0011 26 6 2.1947 -1.2068 0.0014 27 1 -0.3634 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6450 2.1297 0.0004 31 1 6.1982 4.2071 -0.0059 32 1 8.0658 5.1503 -2.0407 33 1 9.7466 5.1597 -1.4554 34 1 8.9611 3.6201 -1.8817 35 1 9.7009 8.5293 1.2734 36 1 6.4695 -0.4285 -0.0113 37 1 4.4706 -2.8622 1.0289 38 1 3.6927 -3.2963 -0.5122 39 1 5.2472 -2.4294 -0.5131 40 1 1.6444 -2.1361 0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194740771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:59 Heat of formation + Delta-G solvation = 8.997596 kcal Electronic energy + Delta-G solvation = -21673.096897 eV Core-core repulsion = 18452.672721 eV Total energy + Delta-G solvation = -3220.424176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56872 -39.03957 -37.35539 -35.17095 -33.85317 -32.51392 -30.89324 -30.33879 -29.67837 -27.38439 -26.34466 -25.25798 -23.15582 -21.82917 -20.73907 -20.36054 -19.65209 -18.36053 -16.77998 -16.37826 -15.75300 -15.37160 -15.15983 -15.04136 -14.39896 -14.14964 -13.71095 -13.41701 -13.40827 -13.28686 -13.17647 -12.94173 -12.71266 -12.60785 -12.26475 -12.07600 -11.91373 -11.59615 -11.38754 -10.95328 -10.93401 -10.88469 -10.25930 -9.86202 -9.68402 -9.46067 -9.32698 -8.84173 -8.38573 -8.17229 -7.62946 -6.27614 -4.31333 0.79077 1.56369 2.23322 2.95772 3.19269 3.31741 3.35715 3.66822 3.71909 3.79995 4.26023 4.56467 4.70171 4.94436 5.04924 5.07206 5.14724 5.17527 5.30099 5.41470 5.49195 5.54586 5.57548 5.58197 5.74845 5.83063 5.96496 6.10229 6.22362 6.29287 6.45056 6.47163 6.51968 6.60353 6.70285 6.77439 7.01282 7.11477 7.14177 7.40135 7.41215 8.02087 8.37054 8.62983 8.73074 9.32134 10.84390 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.030486 B = 0.003468 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.226082 B = 8072.077278 C = 8782.048228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.058 4.058 3 C -0.139 4.139 4 C 0.117 3.883 5 N -0.576 5.576 6 H 0.419 0.581 7 C 0.031 3.969 8 C 0.569 3.431 9 O -0.535 6.535 10 N -0.696 5.696 11 C 0.237 3.763 12 H 0.053 0.947 13 C -0.162 4.162 14 C -0.539 4.539 15 H 0.079 0.921 16 C 0.080 3.920 17 N -0.891 5.891 18 Si 0.886 3.114 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.261 1.261 22 C -0.118 4.118 23 C -0.119 4.119 24 C -0.026 4.026 25 C -0.115 4.115 26 C -0.153 4.153 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.121 0.879 31 H 0.390 0.610 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.038 0.962 35 H 0.268 0.732 36 H 0.153 0.847 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.145 -16.222 -3.464 22.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.060 4.060 3 C -0.160 4.160 4 C 0.006 3.994 5 N -0.181 5.181 6 H 0.258 0.742 7 C -0.079 4.079 8 C 0.354 3.646 9 O -0.413 6.413 10 N -0.343 5.343 11 C 0.134 3.866 12 H 0.070 0.930 13 C -0.220 4.220 14 C -0.577 4.577 15 H 0.097 0.903 16 C -0.125 4.125 17 N -0.527 5.527 18 Si 0.715 3.285 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.185 1.185 22 C -0.145 4.145 23 C -0.124 4.124 24 C -0.027 4.027 25 C -0.172 4.172 26 C -0.173 4.173 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.139 0.861 31 H 0.223 0.777 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.171 0.829 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.211 -16.259 -3.408 21.862 hybrid contribution 0.384 0.841 -0.296 0.971 sum -13.827 -15.418 -3.704 21.038 Atomic orbital electron populations 1.20767 0.91067 1.02665 1.02269 1.19521 0.95614 0.92175 0.98688 1.19855 0.89755 0.98292 1.08082 1.18258 0.90719 0.87690 1.02725 1.42022 1.04185 1.08220 1.63632 0.74227 1.20526 0.84308 0.93508 1.09518 1.17274 0.86726 0.82695 0.77909 1.90804 1.30542 1.68685 1.51260 1.46155 1.11359 1.04779 1.72033 1.19178 0.81849 0.92373 0.93198 0.92971 1.22461 1.00608 0.99511 0.99466 1.20996 0.98412 0.96200 1.42073 0.90260 1.24826 0.98929 0.94493 0.94202 1.69858 1.32518 1.06452 1.43881 0.86865 0.83723 0.79601 0.78275 1.20212 1.22036 1.18542 1.20811 0.95149 0.93250 1.05295 1.18028 0.93072 0.92273 1.09016 1.19144 0.93167 0.93477 0.96883 1.20786 1.00409 0.93556 1.02454 1.20331 0.93175 0.97300 1.06453 0.91182 0.91643 0.91514 0.86147 0.77658 0.92774 0.93212 0.94336 0.92167 0.82938 0.90969 0.91569 0.91216 0.86167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.99 36.01 0.36 -0.43 16 2 C -0.06 -0.59 5.88 -104.57 -0.61 -1.21 16 3 C -0.14 -1.57 9.71 -39.42 -0.38 -1.95 16 4 C 0.12 1.56 7.25 -83.98 -0.61 0.95 16 5 N -0.58 -7.76 6.07 -7.36 -0.04 -7.81 16 6 H 0.42 4.67 8.12 -40.82 -0.33 4.34 16 7 C 0.03 0.51 6.97 -82.29 -0.57 -0.07 16 8 C 0.57 11.09 7.76 -12.68 -0.10 10.99 16 9 O -0.54 -12.14 16.50 5.23 0.09 -12.06 16 10 N -0.70 -13.73 5.07 -56.12 -0.28 -14.01 16 11 C 0.24 5.59 2.15 -69.08 -0.15 5.44 16 12 H 0.05 1.35 6.63 -51.93 -0.34 1.01 16 13 C -0.16 -3.59 8.96 37.16 0.33 -3.25 16 14 C -0.54 -14.36 9.31 -34.44 -0.32 -14.68 16 15 H 0.08 2.21 7.98 -52.49 -0.42 1.79 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.11 16 17 N -0.89 -26.06 13.96 55.43 0.77 -25.29 16 18 Si 0.89 21.49 24.37 -169.99 -4.14 17.34 16 19 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.26 -6.27 6.53 56.52 0.37 -5.91 16 22 C -0.12 -1.81 10.12 -39.15 -0.40 -2.20 16 23 C -0.12 -1.66 5.98 -106.93 -0.64 -2.30 16 24 C -0.03 -0.30 5.88 -104.57 -0.62 -0.92 16 25 C -0.12 -1.05 9.93 36.01 0.36 -0.70 16 26 C -0.15 -1.59 9.25 -39.98 -0.37 -1.96 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 29 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.39 6.65 7.59 -40.82 -0.31 6.34 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.15 2.20 8.05 -52.49 -0.42 1.78 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.07 0.65 7.83 -51.93 -0.41 0.24 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -31.78 331.78 -7.81 -39.59 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.38 Total: 7.40 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -3.81 Total: -10.17 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.44 Total: -47.10 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.78 -7.81 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194740771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.588 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds