Wall clock time and date at job start Tue Mar 31 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37715 * 119.67302 * 2 1 4 4 C 1.39186 * 119.80634 * 180.02562 * 3 2 1 5 5 N 1.37484 * 133.18378 * 179.97438 * 4 3 2 6 6 H 0.96996 * 125.60960 * 359.97438 * 5 4 3 7 7 C 1.38151 * 108.78813 * 179.97438 * 5 4 3 8 8 C 1.47058 * 125.42675 * 180.02562 * 7 5 4 9 9 O 1.21653 * 119.99985 * 180.02562 * 8 7 5 10 10 N 1.34777 * 119.99966 * 359.75185 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27718 * 10 8 7 12 12 H 1.08999 * 109.46902 * 324.99605 * 11 10 8 13 13 C 1.52995 * 109.47009 * 84.99752 * 11 10 8 14 14 C 1.50700 * 109.46700 * 204.99839 * 11 10 8 15 15 H 1.07996 * 120.00450 * 359.97438 * 14 11 10 16 16 C 1.37880 * 119.99855 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00247 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99852 * 359.97438 * 16 14 11 19 19 H 1.48497 * 109.47458 * 90.00242 * 18 16 14 20 20 H 1.48500 * 109.46835 * 210.00216 * 18 16 14 21 21 H 1.48499 * 109.47044 * 329.99990 * 18 16 14 22 22 C 1.35863 * 109.14657 * 0.26645 * 7 5 4 23 23 C 1.40889 * 119.43000 * 359.94080 * 4 3 2 24 24 C 1.40064 * 119.66606 * 0.02562 * 23 4 3 25 25 C 1.50702 * 120.08279 * 179.97438 * 24 23 4 26 26 C 1.36470 * 119.83306 * 359.97438 * 24 23 4 27 27 H 1.09002 * 109.47564 * 270.02389 * 1 2 3 28 28 H 1.09006 * 109.47254 * 30.02385 * 1 2 3 29 29 H 1.09004 * 109.47010 * 150.02094 * 1 2 3 30 30 H 1.08001 * 120.09766 * 0.02562 * 3 2 1 31 31 H 0.97000 * 119.99736 * 0.26993 * 10 8 7 32 32 H 1.08999 * 109.47409 * 60.00164 * 13 11 10 33 33 H 1.09007 * 109.46569 * 179.97438 * 13 11 10 34 34 H 1.09001 * 109.47135 * 299.99446 * 13 11 10 35 35 H 0.96990 * 120.00359 * 179.97438 * 17 16 14 36 36 H 1.08002 * 126.13544 * 179.73952 * 22 7 5 37 37 H 1.09005 * 109.46959 * 89.99699 * 25 24 23 38 38 H 1.08998 * 109.47208 * 209.99980 * 25 24 23 39 39 H 1.08999 * 109.47167 * 330.00011 * 25 24 23 40 40 H 1.08002 * 119.69482 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.1966 0.0000 4 6 3.5806 1.1998 -0.0005 5 7 4.5191 2.2045 -0.0011 6 1 4.3284 3.1555 -0.0016 7 6 5.7786 1.6368 -0.0009 8 6 7.0482 2.3790 -0.0008 9 8 8.1050 1.7764 -0.0011 10 7 7.0409 3.7267 -0.0061 11 6 8.3056 4.4660 -0.0121 12 1 9.0456 3.9250 0.5776 13 6 8.8057 4.6092 -1.4509 14 6 8.0909 5.8336 0.5835 15 1 7.1103 6.1232 0.9314 16 6 9.1460 6.7154 0.6835 17 7 8.9586 7.9091 1.2028 18 14 10.8419 6.2148 0.0811 19 1 10.9894 6.5875 -1.3488 20 1 11.8782 6.9126 0.8839 21 1 11.0064 4.7464 0.2295 22 6 5.6575 0.2836 -0.0061 23 6 4.2757 -0.0257 0.0002 24 6 3.5592 -1.2291 0.0009 25 6 4.2932 -2.5453 0.0011 26 6 2.1947 -1.2068 0.0014 27 1 -0.3634 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6450 2.1297 0.0004 31 1 6.1982 4.2071 -0.0059 32 1 8.0658 5.1503 -2.0407 33 1 9.7466 5.1597 -1.4554 34 1 8.9611 3.6201 -1.8817 35 1 9.7009 8.5293 1.2734 36 1 6.4695 -0.4285 -0.0113 37 1 4.4706 -2.8622 1.0289 38 1 3.6927 -3.2963 -0.5122 39 1 5.2472 -2.4294 -0.5131 40 1 1.6444 -2.1361 0.0024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194740771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:53 Heat of formation + Delta-G solvation = -11.640422 kcal Electronic energy + Delta-G solvation = -21673.991829 eV Core-core repulsion = 18452.672721 eV Total energy + Delta-G solvation = -3221.319108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 5.02 seconds Orbital eigenvalues (eV) -42.62948 -40.53708 -38.34075 -36.97397 -34.72525 -34.45396 -32.30361 -31.44806 -30.92552 -28.12645 -27.41324 -27.19920 -24.47857 -22.81346 -22.30025 -21.36424 -21.14105 -19.70981 -18.44270 -17.68221 -17.39613 -16.58926 -16.38490 -16.24909 -15.83855 -15.42186 -15.03331 -14.88544 -14.65740 -14.28707 -14.16173 -14.14773 -13.91907 -13.80676 -13.58954 -13.28321 -13.25107 -12.83368 -12.71577 -12.38953 -12.19154 -11.77734 -11.76485 -11.69128 -11.35592 -11.17972 -10.91386 -10.70238 -10.09647 -9.15660 -8.62216 -8.42225 -6.49408 -0.25058 0.66310 1.07207 1.26144 1.34610 1.43922 1.88070 2.21049 2.23701 2.28912 2.86410 2.94039 3.66959 3.74434 3.97699 4.06989 4.30626 4.32153 4.38406 4.47402 4.50559 4.62619 4.67989 4.71510 4.77208 4.87793 4.92598 4.93364 4.97886 5.03744 5.17687 5.21859 5.33238 5.36738 5.47155 5.53235 5.61103 5.71834 5.76309 6.05749 6.16263 6.40945 6.50325 6.67926 7.06722 7.22370 8.72811 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.030486 B = 0.003468 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.226082 B = 8072.077278 C = 8782.048228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.155 4.155 4 C 0.111 3.889 5 N -0.570 5.570 6 H 0.427 0.573 7 C 0.005 3.995 8 C 0.574 3.426 9 O -0.573 6.573 10 N -0.694 5.694 11 C 0.242 3.758 12 H 0.028 0.972 13 C -0.157 4.157 14 C -0.538 4.538 15 H 0.057 0.943 16 C 0.031 3.969 17 N -0.931 5.931 18 Si 0.938 3.062 19 H -0.258 1.258 20 H -0.291 1.291 21 H -0.261 1.261 22 C -0.112 4.112 23 C -0.147 4.147 24 C -0.034 4.034 25 C -0.115 4.115 26 C -0.155 4.155 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.403 0.597 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.272 0.728 36 H 0.153 0.847 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.149 -18.080 -4.309 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.051 4.051 3 C -0.176 4.176 4 C 0.000 4.000 5 N -0.175 5.175 6 H 0.267 0.733 7 C -0.105 4.105 8 C 0.361 3.639 9 O -0.453 6.453 10 N -0.342 5.342 11 C 0.138 3.862 12 H 0.046 0.954 13 C -0.215 4.215 14 C -0.576 4.576 15 H 0.075 0.925 16 C -0.169 4.169 17 N -0.570 5.570 18 Si 0.765 3.235 19 H -0.183 1.183 20 H -0.218 1.218 21 H -0.185 1.185 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.035 4.035 25 C -0.172 4.172 26 C -0.173 4.173 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.238 0.762 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.170 0.830 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.081 0.919 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.256 -18.109 -4.264 24.706 hybrid contribution 0.781 1.297 0.016 1.514 sum -15.475 -16.813 -4.248 23.242 Atomic orbital electron populations 1.20854 0.88557 1.03958 1.03336 1.20009 0.97440 0.91656 0.95996 1.20169 0.88893 0.99817 1.08716 1.18604 0.91562 0.87363 1.02422 1.41892 1.03307 1.08759 1.63591 0.73304 1.19946 0.83931 0.93542 1.13089 1.17584 0.87534 0.82230 0.76568 1.90767 1.32294 1.69274 1.53011 1.45929 1.10737 1.05099 1.72420 1.18858 0.83001 0.90633 0.93712 0.95386 1.22361 1.00612 1.00196 0.98309 1.21200 0.97460 0.97464 1.41460 0.92483 1.25547 1.02426 0.94435 0.94481 1.69961 1.33766 1.07651 1.45598 0.86009 0.79606 0.79133 0.78724 1.18333 1.21847 1.18537 1.20966 0.96191 0.92929 1.03873 1.18245 0.92452 0.93661 1.10759 1.19498 0.94001 0.93649 0.96320 1.20840 1.00271 0.92925 1.03133 1.20735 0.92787 0.98666 1.05163 0.90042 0.90780 0.89906 0.84348 0.76203 0.91554 0.93666 0.93376 0.91906 0.82980 0.90258 0.89343 0.91895 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.99 71.24 0.71 -0.42 16 2 C -0.05 -0.85 5.88 -19.83 -0.12 -0.96 16 3 C -0.16 -3.17 9.71 22.37 0.22 -2.95 16 4 C 0.11 2.86 7.25 39.13 0.28 3.15 16 5 N -0.57 -15.25 6.07 -177.19 -1.08 -16.33 16 6 H 0.43 9.45 8.12 -92.71 -0.75 8.70 16 7 C 0.00 0.15 6.97 39.91 0.28 0.43 16 8 C 0.57 22.81 7.76 86.56 0.67 23.49 16 9 O -0.57 -26.64 16.50 -4.20 -0.07 -26.71 16 10 N -0.69 -27.79 5.07 -449.72 -2.28 -30.07 16 11 C 0.24 11.53 2.15 44.24 0.10 11.62 16 12 H 0.03 1.49 6.63 -2.39 -0.02 1.47 16 13 C -0.16 -6.80 8.96 71.98 0.65 -6.16 16 14 C -0.54 -29.15 9.31 25.60 0.24 -28.91 16 15 H 0.06 3.27 7.98 -2.91 -0.02 3.25 16 16 C 0.03 1.76 5.45 84.66 0.46 2.22 16 17 N -0.93 -55.36 13.96 21.45 0.30 -55.06 16 18 Si 0.94 44.27 24.37 68.60 1.67 45.94 16 19 H -0.26 -11.38 6.87 99.48 0.68 -10.69 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.26 -12.23 6.53 99.48 0.65 -11.58 16 22 C -0.11 -3.45 10.12 22.55 0.23 -3.22 16 23 C -0.15 -3.97 5.98 -21.36 -0.13 -4.10 16 24 C -0.03 -0.72 5.88 -19.83 -0.12 -0.84 16 25 C -0.12 -1.86 9.93 71.24 0.71 -1.16 16 26 C -0.15 -2.70 9.25 22.01 0.20 -2.49 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.67 8.08 -2.38 -0.02 0.65 16 29 H 0.08 0.62 8.08 -2.38 -0.02 0.60 16 30 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.40 13.94 7.59 -92.71 -0.70 13.24 16 32 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.04 1.99 3.27 -2.38 -0.01 1.98 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.27 15.13 8.31 -92.72 -0.77 14.36 16 36 H 0.15 4.50 8.05 -2.91 -0.02 4.48 16 37 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 39 H 0.06 1.10 7.83 -2.39 -0.02 1.08 16 40 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -68.97 331.78 2.47 -66.50 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: -0.46 Total: 26.04 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 4.38 Total: -10.32 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -3.05 Total: -101.45 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.07 Total: -26.71 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.67 Total: 45.94 kcal Total: -68.97 2.47 -66.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194740771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.863 kcal (2) G-P(sol) polarization free energy of solvation -68.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.02 seconds