Wall clock time and date at job start Tue Mar 31 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99838 * 2 1 4 4 H 1.48497 * 109.47122 * 270.00432 * 3 2 1 5 5 H 1.48499 * 109.46982 * 30.00394 * 3 2 1 6 6 H 1.48497 * 109.46785 * 150.00218 * 3 2 1 7 7 C 1.37879 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99185 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00395 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00259 * 90.00245 * 10 9 7 12 12 C 1.50707 * 109.46520 * 270.00173 * 11 10 9 13 13 C 1.38227 * 119.62024 * 94.97709 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.78495 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61172 * 274.99461 * 12 11 10 18 18 C 1.34774 * 120.00232 * 269.99704 * 10 9 7 19 19 O 1.21609 * 120.00643 * 180.02562 * 18 10 9 20 20 C 1.47105 * 119.99889 * 359.97438 * 18 10 9 21 21 C 1.32990 * 120.00266 * 179.97438 * 20 18 10 22 22 C 1.50696 * 119.99872 * 180.02562 * 21 20 18 23 23 C 1.53004 * 117.49881 * 188.62329 * 22 21 20 24 24 C 1.52996 * 60.00065 * 252.50880 * 23 22 21 25 25 H 0.97004 * 120.00262 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47239 * 59.99385 * 9 7 2 27 27 H 1.09003 * 109.46946 * 299.99978 * 9 7 2 28 28 H 1.08993 * 109.47601 * 149.99751 * 11 10 9 29 29 H 1.08997 * 109.47191 * 29.99284 * 11 10 9 30 30 H 1.07998 * 120.41916 * 359.97438 * 13 12 11 31 31 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 32 32 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 33 33 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 34 34 H 1.08010 * 119.99823 * 0.02562 * 20 18 10 35 35 H 1.07997 * 120.00008 * 0.02562 * 21 20 18 36 36 H 1.08995 * 115.55598 * 334.32873 * 22 21 20 37 37 H 1.09004 * 117.49523 * 0.02562 * 23 22 21 38 38 H 1.08999 * 117.50128 * 145.01632 * 23 22 21 39 39 H 1.08994 * 117.49580 * 252.50660 * 24 23 22 40 40 H 1.08998 * 117.51565 * 107.48399 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 4.2436 -3.2661 -1.2697 12 6 2.9875 -3.9766 -1.7040 13 6 2.1214 -3.3562 -2.5847 14 6 0.9710 -4.0203 -2.9814 15 6 0.7286 -5.2852 -2.4673 16 6 1.6406 -5.8420 -1.5911 17 7 2.7273 -5.1827 -1.2392 18 6 4.2250 -3.2103 1.1662 19 8 4.6308 -4.3566 1.1664 20 6 3.9809 -2.5163 2.4401 21 6 4.2025 -3.1431 3.5919 22 6 3.9519 -2.4324 4.8969 23 6 4.4134 -3.1270 6.1797 24 6 2.9220 -3.0446 5.8484 25 1 -0.4851 0.8401 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8744 -0.6799 -0.8912 28 1 5.0455 -3.9927 -1.1395 29 1 4.5313 -2.5396 -2.0296 30 1 2.3397 -2.3678 -2.9614 31 1 0.2780 -3.5617 -3.6713 32 1 -0.1594 -5.8301 -2.7517 33 1 1.4612 -6.8284 -1.1895 34 1 3.6208 -1.4980 2.4400 35 1 4.5622 -4.1614 3.5921 36 1 4.0197 -1.3451 4.8607 37 1 4.8987 -4.0979 6.0796 38 1 4.7851 -2.4967 6.9876 39 1 2.3126 -2.3602 6.4384 40 1 2.4254 -3.9613 5.5304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266401970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:31 Heat of formation + Delta-G solvation = 48.565605 kcal Electronic energy + Delta-G solvation = -22293.207222 eV Core-core repulsion = 19074.498843 eV Total energy + Delta-G solvation = -3218.708379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82281 -38.81295 -37.31677 -35.16399 -32.79877 -32.09978 -31.83127 -31.05126 -28.17564 -26.46215 -23.69852 -22.98889 -22.34800 -22.28375 -21.53751 -19.79014 -18.08333 -17.09264 -16.66303 -16.24358 -15.86446 -15.47785 -15.11060 -14.99013 -14.41692 -14.00553 -13.73686 -13.35416 -12.92953 -12.81584 -12.52017 -12.43529 -12.24487 -11.88609 -11.56993 -11.52321 -11.29291 -11.21029 -10.94974 -10.85454 -10.57293 -10.33627 -10.25532 -9.63024 -9.32859 -9.11068 -8.89233 -8.73551 -8.65323 -8.43314 -7.72451 -6.19957 -4.20534 1.60538 1.86006 1.90911 3.15262 3.23547 3.25412 3.77523 3.89899 4.22321 4.25896 4.47508 4.80145 4.83339 4.99206 5.09791 5.11909 5.25228 5.29802 5.36445 5.53149 5.58176 5.66974 5.69297 5.82862 5.89359 5.96627 6.02201 6.15974 6.20296 6.25934 6.29528 6.42008 6.62302 6.64130 6.71447 6.84277 6.97369 7.22099 7.36208 7.44619 8.15097 8.42695 8.59434 8.87889 9.01334 9.39236 10.92620 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.006882 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.918807 B = 4067.339904 C = 5711.471906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.867 3.133 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.206 3.794 10 N -0.584 5.584 11 C 0.172 3.828 12 C 0.120 3.880 13 C -0.128 4.128 14 C -0.079 4.079 15 C -0.179 4.179 16 C 0.086 3.914 17 N -0.461 5.461 18 C 0.550 3.450 19 O -0.553 6.553 20 C -0.180 4.180 21 C -0.067 4.067 22 C -0.128 4.128 23 C -0.176 4.176 24 C -0.168 4.168 25 H 0.265 0.735 26 H 0.038 0.962 27 H 0.029 0.971 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.146 0.854 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -4.165 1.230 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.694 3.306 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.570 4.570 8 H 0.096 0.904 9 C 0.085 3.915 10 N -0.315 5.315 11 C 0.048 3.952 12 C -0.019 4.019 13 C -0.148 4.148 14 C -0.105 4.105 15 C -0.199 4.199 16 C -0.071 4.071 17 N -0.171 5.171 18 C 0.340 3.660 19 O -0.433 6.433 20 C -0.200 4.200 21 C -0.087 4.087 22 C -0.146 4.146 23 C -0.213 4.213 24 C -0.205 4.205 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.163 0.837 34 H 0.152 0.848 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.141 -4.990 1.789 8.112 hybrid contribution -0.822 1.602 -0.657 1.916 sum 5.319 -3.388 1.132 6.407 Atomic orbital electron populations 1.69893 1.06183 1.26961 1.49764 1.24861 0.94670 0.98642 0.94508 0.86992 0.80507 0.84263 0.78844 1.20002 1.20997 1.18835 1.21364 0.88932 0.94893 1.51770 0.90435 1.19911 0.96110 0.77901 0.97603 1.47746 1.64366 1.15286 1.04058 1.20105 0.93298 0.95538 0.86280 1.21556 0.97174 0.90607 0.92537 1.21917 0.94729 1.00113 0.98062 1.21472 0.96438 0.94210 0.98385 1.22022 1.00744 0.96979 1.00137 1.22608 0.90279 0.99403 0.94854 1.67533 1.19586 1.08359 1.21588 1.18431 0.77404 0.85657 0.84512 1.90719 1.47358 1.17454 1.87752 1.22802 1.03110 1.02029 0.92090 1.22843 0.95218 0.99009 0.91635 1.21253 1.05095 0.99036 0.89228 1.22977 0.97565 1.02417 0.98345 1.22943 0.91985 1.03285 1.02286 0.92515 0.94461 0.95324 0.89138 0.89541 0.84853 0.85415 0.85660 0.83675 0.84839 0.86066 0.86992 0.88610 0.88702 0.88469 0.88489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 19.40 27.47 -169.99 -4.67 14.73 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 7 C -0.53 -13.73 9.79 -34.44 -0.34 -14.06 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 9 C 0.21 4.49 3.99 -5.20 -0.02 4.47 16 10 N -0.58 -12.30 2.44 -177.84 -0.43 -12.73 16 11 C 0.17 3.24 5.76 -5.19 -0.03 3.21 16 12 C 0.12 2.38 6.36 -82.58 -0.53 1.86 16 13 C -0.13 -2.36 9.57 -39.44 -0.38 -2.74 16 14 C -0.08 -1.33 10.18 -39.28 -0.40 -1.73 16 15 C -0.18 -2.83 10.11 -39.44 -0.40 -3.23 16 16 C 0.09 1.50 11.18 -17.55 -0.20 1.31 16 17 N -0.46 -9.46 10.27 -9.47 -0.10 -9.55 16 18 C 0.55 11.96 7.62 -12.66 -0.10 11.87 16 19 O -0.55 -13.00 15.80 5.27 0.08 -12.91 16 20 C -0.18 -3.51 8.86 -37.81 -0.33 -3.84 16 21 C -0.07 -1.14 9.24 -36.13 -0.33 -1.47 16 22 C -0.13 -1.79 6.01 -91.77 -0.55 -2.34 16 23 C -0.18 -1.99 10.23 -26.73 -0.27 -2.27 16 24 C -0.17 -2.10 10.23 -26.73 -0.27 -2.37 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.04 0.80 5.15 -51.93 -0.27 0.53 16 27 H 0.03 0.59 7.32 -51.93 -0.38 0.21 16 28 H 0.09 1.70 7.42 -51.93 -0.39 1.32 16 29 H 0.09 1.36 7.79 -51.93 -0.40 0.96 16 30 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 31 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.13 2.63 6.22 -52.48 -0.33 2.30 16 35 H 0.12 2.10 7.49 -52.49 -0.39 1.70 16 36 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 346.00 15.07 5.21 5.21 Total: -1.00 -31.79 346.00 -8.93 -40.72 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.55 Total: 8.70 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -4.25 Total: -9.42 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.24 Total: -47.03 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.67 Total: 14.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.79 -8.93 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266401970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.288 kcal (2) G-P(sol) polarization free energy of solvation -31.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds