Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86810 * 119.99838 * 2 1 4 4 H 1.48497 * 109.47122 * 270.00432 * 3 2 1 5 5 H 1.48499 * 109.46982 * 30.00394 * 3 2 1 6 6 H 1.48497 * 109.46785 * 150.00218 * 3 2 1 7 7 C 1.37879 * 120.00448 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99185 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00395 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47193 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00259 * 90.00245 * 10 9 7 12 12 C 1.50707 * 109.46520 * 270.00173 * 11 10 9 13 13 C 1.38227 * 119.62024 * 94.97709 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.78495 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61172 * 274.99461 * 12 11 10 18 18 C 1.34774 * 120.00232 * 269.99704 * 10 9 7 19 19 O 1.21609 * 120.00643 * 180.02562 * 18 10 9 20 20 C 1.47105 * 119.99889 * 359.97438 * 18 10 9 21 21 C 1.32990 * 120.00266 * 179.97438 * 20 18 10 22 22 C 1.50696 * 119.99872 * 180.02562 * 21 20 18 23 23 C 1.53004 * 117.49881 * 188.62329 * 22 21 20 24 24 C 1.52996 * 60.00065 * 252.50880 * 23 22 21 25 25 H 0.97004 * 120.00262 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47239 * 59.99385 * 9 7 2 27 27 H 1.09003 * 109.46946 * 299.99978 * 9 7 2 28 28 H 1.08993 * 109.47601 * 149.99751 * 11 10 9 29 29 H 1.08997 * 109.47191 * 29.99284 * 11 10 9 30 30 H 1.07998 * 120.41916 * 359.97438 * 13 12 11 31 31 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 32 32 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 33 33 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 34 34 H 1.08010 * 119.99823 * 0.02562 * 20 18 10 35 35 H 1.07997 * 120.00008 * 0.02562 * 21 20 18 36 36 H 1.08995 * 115.55598 * 334.32873 * 22 21 20 37 37 H 1.09004 * 117.49523 * 0.02562 * 23 22 21 38 38 H 1.08999 * 117.50128 * 145.01632 * 23 22 21 39 39 H 1.08994 * 117.49580 * 252.50660 * 24 23 22 40 40 H 1.08998 * 117.51565 * 107.48399 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 4.2436 -3.2661 -1.2697 12 6 2.9875 -3.9766 -1.7040 13 6 2.1214 -3.3562 -2.5847 14 6 0.9710 -4.0203 -2.9814 15 6 0.7286 -5.2852 -2.4673 16 6 1.6406 -5.8420 -1.5911 17 7 2.7273 -5.1827 -1.2392 18 6 4.2250 -3.2103 1.1662 19 8 4.6308 -4.3566 1.1664 20 6 3.9809 -2.5163 2.4401 21 6 4.2025 -3.1431 3.5919 22 6 3.9519 -2.4324 4.8969 23 6 4.4134 -3.1270 6.1797 24 6 2.9220 -3.0446 5.8484 25 1 -0.4851 0.8401 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8744 -0.6799 -0.8912 28 1 5.0455 -3.9927 -1.1395 29 1 4.5313 -2.5396 -2.0296 30 1 2.3397 -2.3678 -2.9614 31 1 0.2780 -3.5617 -3.6713 32 1 -0.1594 -5.8301 -2.7517 33 1 1.4612 -6.8284 -1.1895 34 1 3.6208 -1.4980 2.4400 35 1 4.5622 -4.1614 3.5921 36 1 4.0197 -1.3451 4.8607 37 1 4.8987 -4.0979 6.0796 38 1 4.7851 -2.4967 6.9876 39 1 2.3126 -2.3602 6.4384 40 1 2.4254 -3.9613 5.5304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266401970.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = 30.383935 kcal Electronic energy + Delta-G solvation = -22293.995638 eV Core-core repulsion = 19074.498843 eV Total energy + Delta-G solvation = -3219.496795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29731 -40.35775 -38.42706 -36.85949 -34.64318 -33.65358 -33.22665 -32.48893 -29.98440 -27.98069 -25.16533 -24.43593 -24.06207 -23.23321 -22.89820 -21.09103 -19.65977 -19.04788 -18.19638 -17.72908 -17.30950 -16.92375 -16.56661 -16.23391 -16.08432 -15.40500 -15.28579 -14.77257 -14.65229 -14.23573 -14.03584 -13.93253 -13.86043 -13.34448 -13.22957 -12.72047 -12.63322 -12.53052 -12.38904 -12.25502 -12.06542 -11.94318 -11.65516 -11.36502 -10.84874 -10.71780 -10.66204 -10.33437 -10.02749 -9.85640 -9.39012 -8.23266 -6.28809 0.21900 0.43751 0.48705 1.41388 1.43917 1.52509 2.22080 2.37549 2.46050 3.03196 3.06351 3.10725 3.46854 3.57989 3.88454 3.95629 4.03684 4.06003 4.11786 4.19754 4.29503 4.32673 4.46796 4.51521 4.59869 4.73126 4.77775 4.81507 4.87746 4.92789 4.99673 5.14738 5.25381 5.26521 5.34746 5.39785 5.48492 5.54295 5.74372 5.88103 6.24454 6.61954 6.76752 7.19003 7.29135 7.40054 8.92852 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.006882 C = 0.004901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.918807 B = 4067.339904 C = 5711.471906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.022 3.978 3 Si 0.936 3.064 4 H -0.263 1.263 5 H -0.290 1.290 6 H -0.239 1.239 7 C -0.520 4.520 8 H 0.024 0.976 9 C 0.212 3.788 10 N -0.587 5.587 11 C 0.167 3.833 12 C 0.099 3.901 13 C -0.143 4.143 14 C -0.088 4.088 15 C -0.171 4.171 16 C 0.070 3.930 17 N -0.498 5.498 18 C 0.542 3.458 19 O -0.581 6.581 20 C -0.217 4.217 21 C -0.036 4.036 22 C -0.155 4.155 23 C -0.150 4.150 24 C -0.169 4.169 25 H 0.265 0.735 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.153 0.847 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.251 -3.245 1.910 7.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.162 1.162 7 C -0.558 4.558 8 H 0.042 0.958 9 C 0.091 3.909 10 N -0.316 5.316 11 C 0.044 3.956 12 C -0.040 4.040 13 C -0.163 4.163 14 C -0.114 4.114 15 C -0.190 4.190 16 C -0.087 4.087 17 N -0.208 5.208 18 C 0.333 3.667 19 O -0.464 6.464 20 C -0.237 4.237 21 C -0.056 4.056 22 C -0.173 4.173 23 C -0.187 4.187 24 C -0.206 4.206 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.133 0.867 30 H 0.155 0.845 31 H 0.170 0.830 32 H 0.181 0.819 33 H 0.187 0.813 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.927 -4.079 2.456 8.405 hybrid contribution -1.144 1.151 -0.813 1.815 sum 5.783 -2.928 1.643 6.687 Atomic orbital electron populations 1.70059 1.08311 1.27977 1.51838 1.25692 0.95331 1.02610 0.94029 0.85896 0.79879 0.78785 0.79575 1.18754 1.21581 1.16165 1.21334 0.90814 0.92762 1.50938 0.95764 1.19808 0.93397 0.78796 0.98915 1.47789 1.63910 1.15111 1.04765 1.20311 0.93082 0.96086 0.86155 1.21675 0.97910 0.90933 0.93437 1.22062 0.95469 1.00460 0.98333 1.21885 0.96220 0.94687 0.98599 1.22419 1.01309 0.96651 0.98643 1.23139 0.89959 1.00383 0.95200 1.67505 1.21343 1.09185 1.22803 1.18859 0.76862 0.85508 0.85431 1.90683 1.48974 1.18525 1.88198 1.22680 1.06772 1.02284 0.91980 1.23086 0.91542 0.98424 0.92508 1.21334 1.07826 0.99475 0.88682 1.23111 0.96360 1.02519 0.96711 1.23047 0.92996 1.03049 1.01529 0.92578 0.93377 0.93059 0.89758 0.86675 0.84549 0.82981 0.81868 0.81306 0.85221 0.86647 0.86220 0.88086 0.86110 0.86844 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.11 13.96 21.45 0.30 -54.81 16 2 C 0.02 1.16 5.47 84.66 0.46 1.62 16 3 Si 0.94 39.11 27.47 68.60 1.88 40.99 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.24 -8.94 6.54 99.48 0.65 -8.29 16 7 C -0.52 -27.28 9.79 25.60 0.25 -27.03 16 8 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 9 C 0.21 9.14 3.99 85.63 0.34 9.48 16 10 N -0.59 -24.98 2.44 -834.80 -2.04 -27.02 16 11 C 0.17 6.39 5.76 85.63 0.49 6.88 16 12 C 0.10 4.01 6.36 42.55 0.27 4.28 16 13 C -0.14 -5.34 9.57 22.36 0.21 -5.13 16 14 C -0.09 -2.90 10.18 22.47 0.23 -2.68 16 15 C -0.17 -5.22 10.11 22.36 0.23 -4.99 16 16 C 0.07 2.45 11.18 84.67 0.95 3.40 16 17 N -0.50 -20.96 10.27 -183.88 -1.89 -22.85 16 18 C 0.54 24.16 7.62 86.57 0.66 24.82 16 19 O -0.58 -28.20 15.80 -4.06 -0.06 -28.27 16 20 C -0.22 -8.57 8.86 23.43 0.21 -8.36 16 21 C -0.04 -1.20 9.24 24.52 0.23 -0.98 16 22 C -0.16 -4.08 6.01 -11.54 -0.07 -4.14 16 23 C -0.15 -2.96 10.23 30.59 0.31 -2.64 16 24 C -0.17 -3.89 10.23 30.59 0.31 -3.58 16 25 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.05 2.00 5.15 -2.39 -0.01 1.98 16 27 H 0.05 2.00 7.32 -2.39 -0.02 1.98 16 28 H 0.08 3.27 7.42 -2.39 -0.02 3.26 16 29 H 0.12 3.58 7.79 -2.39 -0.02 3.56 16 30 H 0.14 4.84 8.06 -2.91 -0.02 4.82 16 31 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 32 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 33 H 0.17 4.81 8.06 -2.91 -0.02 4.79 16 34 H 0.13 5.15 6.22 -2.91 -0.02 5.14 16 35 H 0.12 4.00 7.49 -2.91 -0.02 3.98 16 36 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 37 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -71.35 346.00 4.25 -67.10 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: 0.97 Total: 33.90 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.09 Total: -9.05 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -3.63 Total: -104.67 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.88 Total: 40.99 kcal Total: -71.35 4.25 -67.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266401970.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.483 kcal (2) G-P(sol) polarization free energy of solvation -71.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds