Wall clock time and date at job start Tue Mar 31 2020 07:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46916 * 313.05018 * 3 2 1 5 5 C 1.37097 * 120.00544 * 263.80509 * 4 3 2 6 6 H 1.07993 * 120.00533 * 201.81510 * 5 4 3 7 7 C 1.38964 * 119.99375 * 21.81256 * 5 4 3 8 8 N 1.31404 * 120.00135 * 18.38029 * 7 5 4 9 9 Si 1.86800 * 119.99808 * 198.37504 * 7 5 4 10 10 H 1.48505 * 109.46851 * 60.00196 * 9 7 5 11 11 H 1.48493 * 109.47175 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47299 * 300.00704 * 9 7 5 13 13 C 1.34782 * 120.00097 * 83.80972 * 4 3 2 14 14 O 1.21290 * 119.99911 * 179.97438 * 13 4 3 15 15 C 1.50698 * 119.99448 * 359.97438 * 13 4 3 16 16 N 1.46905 * 109.46645 * 180.02562 * 15 13 4 17 17 C 1.39681 * 110.99761 * 183.49145 * 16 15 13 18 18 C 1.38913 * 120.07325 * 89.76371 * 17 16 15 19 19 C 1.50701 * 120.04121 * 0.02562 * 18 17 16 20 20 C 1.38098 * 119.92331 * 180.27104 * 18 17 16 21 21 C 1.38293 * 120.07467 * 359.45590 * 20 18 17 22 22 C 1.38289 * 120.14913 * 0.29671 * 21 20 18 23 23 C 1.38108 * 120.07172 * 359.97438 * 22 21 20 24 24 C 1.50696 * 120.03277 * 180.02562 * 23 22 21 25 25 H 4.40639 * 5.51331 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.46853 * 193.05305 * 3 2 1 27 27 H 1.09000 * 109.47071 * 73.05329 * 3 2 1 28 28 H 0.97003 * 120.00375 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47577 * 60.00612 * 15 13 4 30 30 H 1.09001 * 109.47356 * 300.00053 * 15 13 4 31 31 H 1.00896 * 111.00198 * 59.54228 * 16 15 13 32 32 H 1.08997 * 109.46927 * 275.58208 * 19 18 17 33 33 H 1.09007 * 109.46853 * 35.57838 * 19 18 17 34 34 H 1.08997 * 109.47442 * 155.57061 * 19 18 17 35 35 H 1.08000 * 119.97009 * 179.73067 * 20 18 17 36 36 H 1.07996 * 119.92590 * 180.27194 * 21 20 18 37 37 H 1.07990 * 119.96190 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47627 * 90.00161 * 24 23 22 39 39 H 1.09004 * 109.46973 * 210.00209 * 24 23 22 40 40 H 1.08998 * 109.47203 * 329.99373 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.9420 1.0093 5 6 3.4839 -0.4914 2.2562 6 1 4.1539 -1.0725 2.8724 7 6 2.9755 0.7131 2.7271 8 7 1.9091 1.2396 2.1682 9 14 3.8080 1.5838 4.1547 10 1 5.2108 1.9052 3.7883 11 1 3.0774 2.8393 4.4627 12 1 3.7983 0.6994 5.3476 13 6 3.2413 -2.2523 0.7121 14 8 3.6464 -3.0327 1.5477 15 6 2.8571 -2.7477 -0.6583 16 7 3.0620 -4.2007 -0.7289 17 6 2.7901 -4.6827 -2.0113 18 6 3.8015 -4.7415 -2.9618 19 6 5.1943 -4.2856 -2.6106 20 6 3.5279 -5.2134 -4.2305 21 6 2.2516 -5.6377 -4.5518 22 6 1.2436 -5.5854 -3.6065 23 6 1.5090 -5.1093 -2.3375 24 6 0.4102 -5.0532 -1.3078 25 1 -1.0498 0.0000 0.0003 26 1 3.0089 1.0019 0.2321 27 1 3.0095 -0.2987 -0.9830 28 1 1.5544 2.0806 2.4966 29 1 3.4760 -2.2563 -1.4090 30 1 1.8080 -2.5194 -0.8462 31 1 2.5041 -4.6785 -0.0372 32 1 5.2665 -3.2057 -2.7398 33 1 5.4100 -4.5426 -1.5735 34 1 5.9137 -4.7788 -3.2642 35 1 4.3127 -5.2553 -4.9713 36 1 2.0414 -6.0105 -5.5434 37 1 0.2479 -5.9171 -3.8608 38 1 0.3841 -5.9908 -0.7526 39 1 0.5985 -4.2288 -0.6200 40 1 -0.5470 -4.8992 -1.8060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281903391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:56 Heat of formation + Delta-G solvation = 59.571349 kcal Electronic energy + Delta-G solvation = -22458.537853 eV Core-core repulsion = 19240.306719 eV Total energy + Delta-G solvation = -3218.231134 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95654 -38.52805 -35.55866 -34.74560 -33.43724 -32.13671 -31.22577 -30.45123 -27.79262 -26.58126 -26.43818 -25.61868 -23.84726 -21.06350 -20.62765 -19.16130 -17.87599 -17.14262 -16.62950 -16.04811 -15.71526 -14.95939 -14.73312 -14.52471 -14.24598 -13.82314 -13.60614 -13.35361 -13.08367 -12.87525 -12.84316 -12.56919 -12.32242 -12.08340 -11.79357 -11.65597 -11.54749 -11.41746 -11.07001 -10.97971 -10.95560 -10.54344 -10.35018 -9.40911 -9.29222 -9.06346 -8.88635 -8.47675 -8.32184 -7.90142 -7.83711 -6.31442 -3.89612 1.41138 1.46749 3.17613 3.24706 3.27729 3.64192 3.76818 3.89347 4.02801 4.15800 4.38233 4.86528 4.89772 5.02216 5.04507 5.05729 5.29950 5.43178 5.49225 5.53902 5.62768 5.67498 5.74946 5.77930 5.84980 5.90289 5.93443 6.01976 6.18654 6.28196 6.43211 6.52737 6.57387 6.69638 6.72784 6.91108 6.99961 7.33955 7.55692 7.74649 8.07303 8.42479 8.79272 9.13261 9.34010 9.90076 10.68683 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.004440 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.661279 B = 6304.635026 C = 6775.680262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.112 4.112 3 C 0.233 3.767 4 N -0.441 5.441 5 C -0.314 4.314 6 H 0.102 0.898 7 C 0.032 3.968 8 N -0.865 5.865 9 Si 0.923 3.077 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.454 3.546 14 O -0.567 6.567 15 C 0.056 3.944 16 N -0.624 5.624 17 C 0.105 3.895 18 C -0.071 4.071 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.121 4.121 25 H 0.198 0.802 26 H 0.108 0.892 27 H 0.060 0.940 28 H 0.268 0.732 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.359 0.641 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.246 -7.174 -12.671 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.113 4.113 3 C 0.109 3.891 4 N -0.161 5.161 5 C -0.441 4.441 6 H 0.120 0.880 7 C -0.172 4.172 8 N -0.503 5.503 9 Si 0.749 3.251 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.242 3.758 14 O -0.450 6.450 15 C -0.074 4.074 16 N -0.253 5.253 17 C 0.007 3.993 18 C -0.072 4.072 19 C -0.164 4.164 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.135 4.135 23 C -0.123 4.123 24 C -0.177 4.177 25 H 0.215 0.785 26 H 0.125 0.875 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.182 0.818 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.440 -7.287 -12.236 14.249 hybrid contribution -1.131 0.690 0.662 1.481 sum -1.570 -6.597 -11.574 13.414 Atomic orbital electron populations 1.24239 0.95341 1.03592 1.04856 1.23148 0.94332 0.97567 0.96277 1.18207 0.84314 0.96686 0.89876 1.43632 1.56467 1.04125 1.11867 1.19581 1.26524 1.05004 0.93028 0.88034 1.25323 0.94922 0.98201 0.98777 1.70026 1.18371 1.19661 1.42219 0.86055 0.79271 0.78484 0.81247 1.19884 1.21077 1.19872 1.19938 0.84430 0.82575 0.88893 1.90536 1.50024 1.54243 1.50159 1.21809 1.00329 0.87176 0.98093 1.57355 1.61275 1.04171 1.02485 1.18570 0.91018 0.99076 0.90603 1.19778 0.95592 0.99055 0.92804 1.20682 0.91681 1.00790 1.03286 1.20928 0.96848 1.00315 0.95744 1.21016 0.93329 1.01359 0.99134 1.20835 0.99075 1.00682 0.92878 1.20491 0.94440 1.01755 0.95658 1.20804 0.96671 1.02593 0.97669 0.78486 0.87463 0.92203 0.92116 0.89469 0.92756 0.81843 0.91667 0.89868 0.92475 0.86198 0.86463 0.86514 0.91016 0.91480 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.34 19.25 29.55 0.57 -4.77 16 2 C -0.11 -2.46 10.67 -37.12 -0.40 -2.85 16 3 C 0.23 5.05 4.91 -6.83 -0.03 5.02 16 4 N -0.44 -10.92 2.59 -117.93 -0.31 -11.23 16 5 C -0.31 -8.51 9.26 -14.93 -0.14 -8.65 16 6 H 0.10 2.90 7.43 -52.49 -0.39 2.51 16 7 C 0.03 0.82 4.91 -17.47 -0.09 0.74 16 8 N -0.86 -22.47 9.46 55.50 0.52 -21.94 16 9 Si 0.92 20.36 29.59 -169.99 -5.03 15.33 16 10 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 11 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 13 C 0.45 10.81 7.61 -10.98 -0.08 10.73 16 14 O -0.57 -15.40 15.97 5.55 0.09 -15.31 16 15 C 0.06 1.05 4.40 -4.97 -0.02 1.02 16 16 N -0.62 -10.91 4.80 -59.53 -0.29 -11.20 16 17 C 0.10 1.61 5.25 -83.78 -0.44 1.17 16 18 C -0.07 -1.00 5.90 -104.42 -0.62 -1.61 16 19 C -0.11 -1.43 9.70 36.01 0.35 -1.08 16 20 C -0.12 -1.44 9.67 -39.61 -0.38 -1.83 16 21 C -0.13 -1.48 10.04 -39.54 -0.40 -1.88 16 22 C -0.12 -1.40 9.70 -39.61 -0.38 -1.79 16 23 C -0.12 -1.67 5.90 -104.42 -0.62 -2.29 16 24 C -0.12 -1.53 9.24 36.00 0.33 -1.19 16 25 H 0.20 3.30 7.80 -54.10 -0.42 2.88 16 26 H 0.11 2.45 6.64 -51.93 -0.35 2.10 16 27 H 0.06 1.09 6.70 -51.93 -0.35 0.74 16 28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 29 H 0.09 1.52 7.40 -51.93 -0.38 1.14 16 30 H 0.05 1.01 6.57 -51.93 -0.34 0.67 16 31 H 0.36 6.43 7.05 -39.29 -0.28 6.16 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.27 7.65 -51.93 -0.40 0.87 16 34 H 0.06 0.62 8.05 -51.93 -0.42 0.21 16 35 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.97 5.91 -51.93 -0.31 0.66 16 40 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -30.45 338.20 -7.55 -38.01 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.30 Total: 10.52 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.34 Total: -9.27 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.07 Total: -44.37 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.09 Total: -15.31 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.45 -7.55 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281903391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.580 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds