Wall clock time and date at job start Tue Mar 31 2020 07:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46916 * 313.05018 * 3 2 1 5 5 C 1.37097 * 120.00544 * 263.80509 * 4 3 2 6 6 H 1.07993 * 120.00533 * 201.81510 * 5 4 3 7 7 C 1.38964 * 119.99375 * 21.81256 * 5 4 3 8 8 N 1.31404 * 120.00135 * 18.38029 * 7 5 4 9 9 Si 1.86800 * 119.99808 * 198.37504 * 7 5 4 10 10 H 1.48505 * 109.46851 * 60.00196 * 9 7 5 11 11 H 1.48493 * 109.47175 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47299 * 300.00704 * 9 7 5 13 13 C 1.34782 * 120.00097 * 83.80972 * 4 3 2 14 14 O 1.21290 * 119.99911 * 179.97438 * 13 4 3 15 15 C 1.50698 * 119.99448 * 359.97438 * 13 4 3 16 16 N 1.46905 * 109.46645 * 180.02562 * 15 13 4 17 17 C 1.39681 * 110.99761 * 183.49145 * 16 15 13 18 18 C 1.38913 * 120.07325 * 89.76371 * 17 16 15 19 19 C 1.50701 * 120.04121 * 0.02562 * 18 17 16 20 20 C 1.38098 * 119.92331 * 180.27104 * 18 17 16 21 21 C 1.38293 * 120.07467 * 359.45590 * 20 18 17 22 22 C 1.38289 * 120.14913 * 0.29671 * 21 20 18 23 23 C 1.38108 * 120.07172 * 359.97438 * 22 21 20 24 24 C 1.50696 * 120.03277 * 180.02562 * 23 22 21 25 25 H 4.40639 * 5.51331 * 179.97438 * 4 1 2 26 26 H 1.08999 * 109.46853 * 193.05305 * 3 2 1 27 27 H 1.09000 * 109.47071 * 73.05329 * 3 2 1 28 28 H 0.97003 * 120.00375 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47577 * 60.00612 * 15 13 4 30 30 H 1.09001 * 109.47356 * 300.00053 * 15 13 4 31 31 H 1.00896 * 111.00198 * 59.54228 * 16 15 13 32 32 H 1.08997 * 109.46927 * 275.58208 * 19 18 17 33 33 H 1.09007 * 109.46853 * 35.57838 * 19 18 17 34 34 H 1.08997 * 109.47442 * 155.57061 * 19 18 17 35 35 H 1.08000 * 119.97009 * 179.73067 * 20 18 17 36 36 H 1.07996 * 119.92590 * 180.27194 * 21 20 18 37 37 H 1.07990 * 119.96190 * 179.97438 * 22 21 20 38 38 H 1.09000 * 109.47627 * 90.00161 * 24 23 22 39 39 H 1.09004 * 109.46973 * 210.00209 * 24 23 22 40 40 H 1.08998 * 109.47203 * 329.99373 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1348 -0.9420 1.0093 5 6 3.4839 -0.4914 2.2562 6 1 4.1539 -1.0725 2.8724 7 6 2.9755 0.7131 2.7271 8 7 1.9091 1.2396 2.1682 9 14 3.8080 1.5838 4.1547 10 1 5.2108 1.9052 3.7883 11 1 3.0774 2.8393 4.4627 12 1 3.7983 0.6994 5.3476 13 6 3.2413 -2.2523 0.7121 14 8 3.6464 -3.0327 1.5477 15 6 2.8571 -2.7477 -0.6583 16 7 3.0620 -4.2007 -0.7289 17 6 2.7901 -4.6827 -2.0113 18 6 3.8015 -4.7415 -2.9618 19 6 5.1943 -4.2856 -2.6106 20 6 3.5279 -5.2134 -4.2305 21 6 2.2516 -5.6377 -4.5518 22 6 1.2436 -5.5854 -3.6065 23 6 1.5090 -5.1093 -2.3375 24 6 0.4102 -5.0532 -1.3078 25 1 -1.0498 0.0000 0.0003 26 1 3.0089 1.0019 0.2321 27 1 3.0095 -0.2987 -0.9830 28 1 1.5544 2.0806 2.4966 29 1 3.4760 -2.2563 -1.4090 30 1 1.8080 -2.5194 -0.8462 31 1 2.5041 -4.6785 -0.0372 32 1 5.2665 -3.2057 -2.7398 33 1 5.4100 -4.5426 -1.5735 34 1 5.9137 -4.7788 -3.2642 35 1 4.3127 -5.2553 -4.9713 36 1 2.0414 -6.0105 -5.5434 37 1 0.2479 -5.9171 -3.8608 38 1 0.3841 -5.9908 -0.7526 39 1 0.5985 -4.2288 -0.6200 40 1 -0.5470 -4.8992 -1.8060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281903391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:55 Heat of formation + Delta-G solvation = 42.872853 kcal Electronic energy + Delta-G solvation = -22459.261954 eV Core-core repulsion = 19240.306719 eV Total energy + Delta-G solvation = -3218.955235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.15431 -40.21286 -37.21816 -36.23854 -34.43582 -34.00943 -33.02860 -31.59141 -29.18676 -28.15481 -27.51363 -27.06324 -25.56650 -22.09913 -21.64169 -20.92997 -19.67694 -18.58540 -18.34239 -17.52467 -16.93609 -16.60310 -16.16554 -16.01577 -15.67737 -15.38878 -14.84907 -14.55103 -14.42289 -14.11986 -14.06136 -13.84385 -13.78549 -13.52904 -13.46989 -13.29104 -12.78673 -12.73595 -12.50833 -12.40848 -12.16407 -12.06890 -11.93603 -11.18057 -11.11100 -10.70287 -10.44205 -9.99097 -9.80216 -9.44119 -9.05858 -8.29116 -5.95389 0.40785 0.48965 1.38797 1.43016 1.52274 1.88093 2.11578 2.32310 2.38152 2.74049 2.99640 3.06542 3.36612 3.84391 3.90743 3.93598 4.04187 4.17233 4.25522 4.31000 4.42125 4.54623 4.63680 4.64338 4.66812 4.72466 4.86245 4.92673 4.94501 4.98649 5.18621 5.39498 5.40736 5.47062 5.55101 5.60589 5.70405 5.81164 6.07581 6.16824 6.45733 6.53235 7.13818 7.15519 7.40646 7.98490 8.68231 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.004440 C = 0.004131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.661279 B = 6304.635026 C = 6775.680262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.152 4.152 3 C 0.235 3.765 4 N -0.451 5.451 5 C -0.350 4.350 6 H 0.074 0.926 7 C 0.004 3.996 8 N -0.873 5.873 9 Si 0.984 3.016 10 H -0.266 1.266 11 H -0.273 1.273 12 H -0.281 1.281 13 C 0.445 3.555 14 O -0.612 6.612 15 C 0.079 3.921 16 N -0.630 5.630 17 C 0.074 3.926 18 C -0.086 4.086 19 C -0.104 4.104 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.131 4.131 24 C -0.118 4.118 25 H 0.232 0.768 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.271 0.729 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.351 0.649 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 -7.260 -14.956 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.153 4.153 3 C 0.113 3.887 4 N -0.171 5.171 5 C -0.478 4.478 6 H 0.091 0.909 7 C -0.199 4.199 8 N -0.510 5.510 9 Si 0.808 3.192 10 H -0.191 1.191 11 H -0.198 1.198 12 H -0.206 1.206 13 C 0.234 3.766 14 O -0.497 6.497 15 C -0.051 4.051 16 N -0.258 5.258 17 C -0.023 4.023 18 C -0.087 4.087 19 C -0.161 4.161 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.137 4.137 23 C -0.133 4.133 24 C -0.174 4.174 25 H 0.248 0.752 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.172 0.828 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.159 0.841 38 H 0.096 0.904 39 H 0.061 0.939 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.441 -7.356 -14.565 16.380 hybrid contribution -0.888 0.665 1.303 1.711 sum -2.329 -6.692 -13.262 15.036 Atomic orbital electron populations 1.25089 0.96294 1.01837 1.03147 1.23387 0.94928 0.99178 0.97851 1.18248 0.84720 0.95303 0.90457 1.43823 1.56352 1.05050 1.11826 1.19496 1.27732 1.06101 0.94450 0.90851 1.25983 0.95104 0.97933 1.00896 1.70125 1.18478 1.19589 1.42803 0.85148 0.78724 0.77393 0.77955 1.19137 1.19799 1.20624 1.20780 0.83255 0.82070 0.90478 1.90490 1.51867 1.55324 1.52040 1.21526 1.00334 0.88469 0.94767 1.57326 1.61548 1.03121 1.03840 1.18718 0.92439 1.01203 0.89930 1.19981 0.95413 0.99701 0.93629 1.20636 0.92365 1.00949 1.02139 1.21250 0.98102 0.99268 0.95216 1.21445 0.92621 0.99663 1.00326 1.21165 1.00601 0.99915 0.92052 1.20642 0.93974 1.01959 0.96773 1.20787 0.97354 1.01961 0.97321 0.75189 0.89024 0.88980 0.91859 0.88147 0.92503 0.82761 0.91843 0.92624 0.90021 0.83603 0.83192 0.84070 0.90363 0.93909 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.66 19.25 74.32 1.43 -8.22 16 2 C -0.15 -6.63 10.67 31.13 0.33 -6.30 16 3 C 0.24 10.33 4.91 84.58 0.42 10.75 16 4 N -0.45 -23.11 2.59 -645.41 -1.67 -24.78 16 5 C -0.35 -19.73 9.26 84.04 0.78 -18.95 16 6 H 0.07 4.45 7.43 -2.91 -0.02 4.43 16 7 C 0.00 0.23 4.91 84.93 0.42 0.64 16 8 N -0.87 -45.37 9.46 21.67 0.20 -45.16 16 9 Si 0.98 42.14 29.59 68.60 2.03 44.17 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 12 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 13 C 0.44 22.08 7.61 87.66 0.67 22.75 16 14 O -0.61 -35.10 15.97 -3.06 -0.05 -35.15 16 15 C 0.08 3.03 4.40 85.56 0.38 3.41 16 16 N -0.63 -22.75 4.80 -342.24 -1.64 -24.40 16 17 C 0.07 2.24 5.25 38.21 0.20 2.44 16 18 C -0.09 -2.31 5.90 -19.74 -0.12 -2.43 16 19 C -0.10 -2.72 9.70 71.24 0.69 -2.02 16 20 C -0.12 -2.53 9.67 22.25 0.22 -2.31 16 21 C -0.12 -2.32 10.04 22.30 0.22 -2.09 16 22 C -0.12 -2.51 9.70 22.25 0.22 -2.30 16 23 C -0.13 -3.45 5.90 -19.74 -0.12 -3.57 16 24 C -0.12 -2.89 9.24 71.23 0.66 -2.23 16 25 H 0.23 7.06 7.80 -4.43 -0.03 7.02 16 26 H 0.09 4.26 6.64 -2.39 -0.02 4.24 16 27 H 0.09 3.33 6.70 -2.39 -0.02 3.31 16 28 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 29 H 0.10 3.53 7.40 -2.39 -0.02 3.51 16 30 H 0.06 2.15 6.57 -2.39 -0.02 2.13 16 31 H 0.35 13.27 7.05 -89.70 -0.63 12.64 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.75 7.65 -2.38 -0.02 1.73 16 34 H 0.08 1.66 8.05 -2.39 -0.02 1.64 16 35 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 37 H 0.14 2.25 8.06 -2.92 -0.02 2.23 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 39 H 0.04 1.25 5.91 -2.39 -0.01 1.24 16 40 H 0.09 1.77 8.09 -2.39 -0.02 1.76 16 Total: -1.00 -67.83 338.20 5.67 -62.15 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.42 Total: 33.63 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 6.39 Total: -10.46 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -3.11 Total: -94.35 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.05 Total: -35.15 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -67.83 5.67 -62.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281903391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.027 kcal (2) G-P(sol) polarization free energy of solvation -67.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds