Wall clock time and date at job start Tue Mar 31 2020 06:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99491 * 2 1 4 4 H 1.48506 * 109.46949 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47619 * 300.00066 * 3 2 1 6 6 H 1.48501 * 109.47215 * 60.00341 * 3 2 1 7 7 C 1.37869 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00048 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00238 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47133 * 180.02562 * 9 7 2 11 11 C 1.46497 * 120.00103 * 84.39080 * 10 9 7 12 12 C 1.50697 * 109.47429 * 89.99631 * 11 10 9 13 13 C 1.38225 * 119.61946 * 95.02759 * 12 11 10 14 14 C 1.38625 * 119.16331 * 179.70633 * 13 12 11 15 15 C 1.38682 * 118.41724 * 0.50604 * 14 13 12 16 16 C 1.38176 * 119.16438 * 359.51385 * 15 14 13 17 17 N 1.31858 * 119.61462 * 275.00241 * 12 11 10 18 18 C 1.34785 * 120.00094 * 264.38409 * 10 9 7 19 19 O 1.21611 * 119.99450 * 181.94647 * 18 10 9 20 20 C 1.47096 * 119.99763 * 1.94908 * 18 10 9 21 21 C 1.32613 * 124.61726 * 221.23234 * 20 18 10 22 22 C 1.51118 * 110.75692 * 179.84591 * 21 20 18 23 23 C 1.54579 * 104.90092 * 343.81341 * 22 21 20 24 24 C 1.51109 * 124.62405 * 41.54383 * 20 18 10 25 25 H 0.96996 * 119.99778 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46958 * 60.00707 * 9 7 2 27 27 H 1.08996 * 109.47533 * 300.00802 * 9 7 2 28 28 H 1.09006 * 109.46923 * 329.99290 * 11 10 9 29 29 H 1.09002 * 109.47104 * 209.99916 * 11 10 9 30 30 H 1.08001 * 120.41593 * 359.94821 * 13 12 11 31 31 H 1.07996 * 120.79687 * 180.27291 * 14 13 12 32 32 H 1.08001 * 120.41722 * 179.78385 * 15 14 13 33 33 H 1.08000 * 119.61938 * 180.25269 * 16 15 14 34 34 H 1.08004 * 124.62204 * 0.02562 * 21 20 18 35 35 H 1.09000 * 110.52154 * 224.85553 * 22 21 20 36 36 H 1.08998 * 110.14874 * 102.57867 * 22 21 20 37 37 H 1.09000 * 110.97950 * 266.70523 * 23 22 21 38 38 H 1.08994 * 110.98276 * 142.91295 * 23 22 21 39 39 H 1.09003 * 110.36223 * 315.43620 * 24 20 18 40 40 H 1.09007 * 110.36883 * 77.75247 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0005 11 6 2.7736 -4.0887 1.2621 12 6 1.8945 -5.1708 1.8340 13 6 2.1903 -6.4969 1.5798 14 6 1.3789 -7.4848 2.1156 15 6 0.2890 -7.0999 2.8820 16 6 0.0556 -5.7545 3.0929 17 7 0.8522 -4.8417 2.5716 18 6 2.5545 -4.1990 -1.1622 19 8 3.3174 -5.1460 -1.1589 20 6 2.0150 -3.6934 -2.4338 21 6 1.6009 -4.4593 -3.4341 22 6 1.1049 -3.6152 -4.5852 23 6 0.8915 -2.2077 -3.9829 24 6 1.8632 -2.2306 -2.7811 25 1 -0.4849 0.8400 0.0004 26 1 0.6243 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8895 28 1 2.8360 -3.2603 1.9678 29 1 3.7716 -4.4885 1.0821 30 1 3.0452 -6.7601 0.9745 31 1 1.5881 -8.5292 1.9375 32 1 -0.3666 -7.8426 3.3121 33 1 -0.7887 -5.4467 3.6919 34 1 1.6135 -5.5393 -3.4259 35 1 0.1647 -4.0094 -4.9708 36 1 1.8549 -3.5799 -5.3754 37 1 -0.1382 -2.0777 -3.6499 38 1 1.1704 -1.4317 -4.6957 39 1 1.4387 -1.6831 -1.9395 40 1 2.8265 -1.8059 -3.0639 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348804984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:25 Heat of formation + Delta-G solvation = 22.471639 kcal Electronic energy + Delta-G solvation = -22799.828089 eV Core-core repulsion = 19579.988191 eV Total energy + Delta-G solvation = -3219.839898 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.08914 -39.23052 -37.06864 -35.17854 -32.89734 -32.16421 -31.45034 -28.95200 -28.19367 -27.07924 -26.01458 -23.32188 -22.89019 -22.17187 -20.54012 -19.93711 -17.54373 -16.86958 -16.31529 -16.28473 -15.70684 -15.64278 -15.22156 -14.75281 -14.54707 -14.14350 -13.70132 -13.18121 -13.04875 -12.68530 -12.38586 -12.35931 -12.13587 -11.57782 -11.52536 -11.27741 -11.18399 -11.12123 -10.91378 -10.84625 -10.65361 -10.23361 -9.82024 -9.71594 -9.63425 -9.23498 -9.09507 -8.73096 -8.55443 -8.25922 -7.76055 -6.17112 -4.22749 1.31831 1.53077 2.14628 3.22803 3.31981 3.35801 3.66800 3.86969 4.28131 4.37387 4.62564 4.98682 5.05491 5.12027 5.15634 5.20204 5.27419 5.40120 5.54266 5.59819 5.78609 5.80465 5.89678 6.03304 6.08468 6.24310 6.27341 6.35274 6.38034 6.42655 6.51901 6.69460 6.79839 6.85670 6.93993 7.10050 7.23239 7.50765 7.57985 7.77529 8.05991 8.28221 8.37077 8.78888 8.97371 9.41712 10.88762 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.006712 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.238066 B = 4170.724123 C = 5597.280488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.229 3.771 10 N -0.579 5.579 11 C 0.167 3.833 12 C 0.120 3.880 13 C -0.152 4.152 14 C -0.084 4.084 15 C -0.182 4.182 16 C 0.094 3.906 17 N -0.463 5.463 18 C 0.563 3.437 19 O -0.573 6.573 20 C -0.143 4.143 21 C -0.131 4.131 22 C -0.097 4.097 23 C -0.122 4.122 24 C -0.122 4.122 25 H 0.265 0.735 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.138 0.862 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.152 0.848 34 H 0.123 0.877 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.148 0.852 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.003 -9.577 -0.458 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.109 3.891 10 N -0.308 5.308 11 C 0.043 3.957 12 C -0.019 4.019 13 C -0.172 4.172 14 C -0.110 4.110 15 C -0.202 4.202 16 C -0.063 4.063 17 N -0.172 5.172 18 C 0.353 3.647 19 O -0.455 6.455 20 C -0.146 4.146 21 C -0.150 4.150 22 C -0.134 4.134 23 C -0.159 4.159 24 C -0.158 4.158 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.169 0.831 34 H 0.140 0.860 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.165 0.835 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.053 -9.000 -0.281 9.004 hybrid contribution 0.454 -0.061 -0.116 0.473 sum 0.508 -9.061 -0.397 9.084 Atomic orbital electron populations 1.69948 1.05894 1.27189 1.49295 1.24912 0.94825 0.99089 0.94826 0.86519 0.80248 0.83470 0.77780 1.19611 1.20789 1.20865 1.21457 0.93748 0.90319 1.51600 0.91880 1.19803 0.87635 0.82135 0.99506 1.48115 1.44815 1.34059 1.03776 1.20155 0.94195 0.94838 0.86533 1.21881 0.93196 0.93815 0.92971 1.22135 1.01427 0.93522 1.00142 1.21542 0.94200 0.99730 0.95545 1.22086 0.99061 0.97804 1.01236 1.22768 0.97684 0.89082 0.96796 1.67609 1.03419 1.38310 1.07867 1.18161 0.80578 0.81843 0.84127 1.90661 1.37810 1.29169 1.87904 1.21856 1.01097 0.97939 0.93671 1.23670 0.98595 0.98661 0.94076 1.21353 1.00299 0.95174 0.96564 1.22415 1.00527 0.95518 0.97477 1.22118 0.99676 0.92824 1.01205 0.92524 0.93416 0.93712 0.88268 0.89358 0.84426 0.85312 0.85320 0.83053 0.85960 0.91452 0.90938 0.91080 0.91526 0.83488 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.76 13.29 55.43 0.74 -23.03 16 2 C 0.07 1.72 5.19 -17.82 -0.09 1.63 16 3 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -13.44 7.17 -34.44 -0.25 -13.69 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.23 5.49 4.65 -5.19 -0.02 5.47 16 10 N -0.58 -12.60 2.44 -177.83 -0.43 -13.03 16 11 C 0.17 3.25 5.72 -5.20 -0.03 3.22 16 12 C 0.12 2.20 6.36 -82.59 -0.53 1.68 16 13 C -0.15 -2.44 9.72 -39.44 -0.38 -2.82 16 14 C -0.08 -1.12 10.18 -39.27 -0.40 -1.52 16 15 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 16 C 0.09 1.40 11.18 -17.55 -0.20 1.21 16 17 N -0.46 -8.57 10.27 -9.47 -0.10 -8.67 16 18 C 0.56 12.32 7.49 -12.66 -0.09 12.22 16 19 O -0.57 -13.02 16.50 5.27 0.09 -12.93 16 20 C -0.14 -2.88 5.02 -102.73 -0.52 -3.40 16 21 C -0.13 -2.27 10.64 -36.00 -0.38 -2.66 16 22 C -0.10 -1.43 6.80 -26.85 -0.18 -1.61 16 23 C -0.12 -2.01 7.16 -25.08 -0.18 -2.19 16 24 C -0.12 -2.43 5.72 -26.86 -0.15 -2.58 16 25 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 26 H 0.05 1.20 5.25 -51.93 -0.27 0.93 16 27 H 0.04 1.18 8.11 -51.93 -0.42 0.76 16 28 H 0.10 1.95 8.07 -51.93 -0.42 1.53 16 29 H 0.09 1.62 7.35 -51.93 -0.38 1.24 16 30 H 0.14 2.19 7.93 -52.49 -0.42 1.77 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 34 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.15 3.38 3.01 -51.93 -0.16 3.22 16 40 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -28.99 335.25 -8.90 -37.89 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -5.42 Total: 7.35 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.81 Total: -7.75 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.20 Total: -44.73 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.99 -8.90 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348804984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.360 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds