Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99835 * 2 1 4 4 H 1.48497 * 109.47214 * 270.00267 * 3 2 1 5 5 H 1.48503 * 109.47254 * 30.00319 * 3 2 1 6 6 H 1.48497 * 109.47103 * 150.00249 * 3 2 1 7 7 C 1.37871 * 120.00436 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00301 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99921 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47198 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46768 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99998 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99436 * 180.02562 * 11 10 9 14 14 C 1.46879 * 121.40873 * 0.04862 * 13 11 10 15 15 C 1.53082 * 108.18258 * 117.62880 * 14 13 11 16 16 C 1.49987 * 110.25505 * 45.71022 * 15 14 13 17 17 C 1.31134 * 124.37901 * 341.10673 * 16 15 14 18 18 C 1.47785 * 118.28241 * 180.79536 * 17 16 15 19 19 C 1.39975 * 120.92303 * 244.71605 * 18 17 16 20 20 C 1.37928 * 118.99618 * 179.80129 * 19 18 17 21 21 N 1.31947 * 120.89666 * 0.48789 * 20 19 18 22 22 C 1.31933 * 122.05567 * 359.73752 * 21 20 19 23 23 C 1.37925 * 120.90380 * 0.02765 * 22 21 20 24 24 C 1.46995 * 121.33249 * 179.97438 * 13 11 10 25 25 H 0.97005 * 120.00315 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46852 * 59.99700 * 9 7 2 27 27 H 1.09000 * 109.47137 * 300.00500 * 9 7 2 28 28 H 1.08991 * 109.47153 * 59.99833 * 10 9 7 29 29 H 1.09002 * 109.46673 * 299.99922 * 10 9 7 30 30 H 1.08999 * 109.54314 * 358.00169 * 14 13 11 31 31 H 1.09003 * 109.75804 * 237.37616 * 14 13 11 32 32 H 1.09002 * 109.31502 * 285.51757 * 15 14 13 33 33 H 1.08998 * 109.31383 * 165.89935 * 15 14 13 34 34 H 1.07998 * 117.81240 * 161.12618 * 16 15 14 35 35 H 1.07998 * 120.49734 * 0.02562 * 19 18 17 36 36 H 1.07994 * 119.55285 * 180.22916 * 20 19 18 37 37 H 1.08006 * 119.54646 * 179.97438 * 22 21 20 38 38 H 1.08004 * 120.50204 * 179.97438 * 23 22 21 39 39 H 1.09008 * 109.52050 * 103.36641 * 24 13 11 40 40 H 1.08995 * 109.52485 * 343.17775 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2790 -4.9671 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 3.6342 -6.1703 0.0014 15 6 4.0933 -6.8569 1.2902 16 6 3.2908 -8.1010 1.5301 17 6 2.1309 -8.3530 0.9725 18 6 1.4470 -9.6163 1.3193 19 6 1.2304 -10.6057 0.3531 20 6 0.5916 -11.7714 0.7213 21 7 0.1790 -11.9554 1.9611 22 6 0.3588 -11.0472 2.9010 23 6 0.9925 -9.8544 2.6215 24 6 1.4608 -7.4241 -0.0008 25 1 -0.4851 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 2.8720 -3.6042 0.8894 29 1 2.8720 -3.6042 -0.8906 30 1 4.0239 -5.1529 -0.0334 31 1 3.9903 -6.7318 -0.8624 32 1 3.9598 -6.1743 2.1296 33 1 5.1477 -7.1192 1.2031 34 1 3.6950 -8.8386 2.2075 35 1 1.5617 -10.4600 -0.6644 36 1 0.4232 -12.5423 -0.0160 37 1 0.0042 -11.2400 3.9027 38 1 1.1359 -9.1152 3.3958 39 1 1.4948 -7.8578 -1.0003 40 1 0.4231 -7.2720 0.2961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360598974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -15.474282 kcal Electronic energy + Delta-G solvation = -21505.318557 eV Core-core repulsion = 18283.833200 eV Total energy + Delta-G solvation = -3221.485357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47230 -40.80320 -38.59200 -35.62682 -35.27321 -33.08777 -33.02847 -32.17335 -31.03717 -28.21300 -26.44160 -25.39675 -24.32001 -23.60197 -23.25480 -20.53966 -19.08085 -18.67675 -18.03197 -17.42690 -17.24690 -16.83091 -16.61529 -16.41967 -16.33801 -15.26432 -15.23360 -14.88708 -14.79671 -14.54346 -14.45969 -14.19678 -13.97130 -13.62253 -13.21555 -13.09988 -12.80928 -12.67916 -12.49694 -12.43753 -12.01661 -11.93520 -11.55679 -11.30576 -10.89330 -10.71631 -10.56861 -10.47391 -10.13621 -9.80006 -9.70245 -8.17663 -6.31988 0.07791 0.18680 1.05937 1.42823 1.45635 1.56453 1.64405 1.96054 2.43533 2.82956 3.15557 3.41762 3.57575 3.62660 3.89430 3.99663 4.06278 4.14010 4.17550 4.20350 4.39510 4.44229 4.46849 4.51198 4.55880 4.66273 4.71865 4.85137 4.87278 4.96575 5.04806 5.08694 5.26292 5.39410 5.48354 5.55491 5.61642 5.71605 5.77758 5.84928 6.16952 6.37709 6.86622 7.00134 7.21204 7.38581 8.95170 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.033043 B = 0.002970 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.181117 B = 9425.613693 C = 9780.266716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.253 1.253 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.113 4.113 11 C 0.513 3.487 12 O -0.591 6.591 13 N -0.614 5.614 14 C 0.096 3.904 15 C -0.106 4.106 16 C -0.105 4.105 17 C -0.125 4.125 18 C -0.010 4.010 19 C -0.163 4.163 20 C 0.092 3.908 21 N -0.515 5.515 22 C 0.092 3.908 23 C -0.169 4.169 24 C 0.157 3.843 25 H 0.262 0.738 26 H -0.020 1.020 27 H -0.020 1.020 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.154 0.846 36 H 0.180 0.820 37 H 0.176 0.824 38 H 0.142 0.858 39 H 0.089 0.911 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.125 -22.610 2.477 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.005 3.995 10 C -0.152 4.152 11 C 0.304 3.696 12 O -0.471 6.471 13 N -0.347 5.347 14 C -0.026 4.026 15 C -0.143 4.143 16 C -0.124 4.124 17 C -0.125 4.125 18 C -0.019 4.019 19 C -0.183 4.183 20 C -0.064 4.064 21 N -0.225 5.225 22 C -0.064 4.064 23 C -0.189 4.189 24 C 0.034 3.966 25 H 0.071 0.929 26 H -0.001 1.001 27 H -0.002 1.002 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.172 0.828 36 H 0.197 0.803 37 H 0.193 0.807 38 H 0.160 0.840 39 H 0.107 0.893 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.928 -23.280 2.690 25.857 hybrid contribution -0.128 1.681 -0.165 1.694 sum 10.800 -21.599 2.524 24.280 Atomic orbital electron populations 1.70184 1.08405 1.27801 1.51533 1.26156 0.95701 1.04030 0.94659 0.85315 0.78721 0.77641 0.78532 1.19701 1.21363 1.17666 1.21706 0.94068 0.91415 1.50680 0.90312 1.18698 0.93709 0.92588 0.94541 1.21628 0.99249 0.89623 1.04738 1.21439 0.87589 0.86485 0.74079 1.90650 1.16818 1.87970 1.51662 1.48184 1.08570 1.04458 1.73519 1.22107 0.77226 1.03976 0.99256 1.20920 1.01154 0.94372 0.97862 1.22528 0.94150 0.98216 0.97470 1.19679 0.96760 0.94307 1.01804 1.19425 0.95317 0.93320 0.93819 1.22516 1.00451 0.94226 1.01099 1.23133 0.93238 0.96770 0.93251 1.67680 1.19010 1.33216 1.02566 1.23037 0.94687 0.89185 0.99489 1.22484 1.00041 0.99385 0.97002 1.20106 0.95887 0.82024 0.98575 0.92893 1.00116 1.00206 0.87673 0.87537 0.87791 0.88604 0.89962 0.85984 0.85806 0.82808 0.80310 0.80736 0.84014 0.89318 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.78 13.29 21.44 0.28 -59.49 16 2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 3 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 6 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 7 C -0.54 -30.48 9.11 25.60 0.23 -30.24 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.04 2.36 4.26 29.85 0.13 2.49 16 10 C -0.11 -4.48 4.01 29.85 0.12 -4.36 16 11 C 0.51 20.32 7.72 87.66 0.68 21.00 16 12 O -0.59 -29.92 15.53 -3.03 -0.05 -29.97 16 13 N -0.61 -17.26 2.96 -824.46 -2.44 -19.70 16 14 C 0.10 1.71 6.38 86.33 0.55 2.26 16 15 C -0.11 -1.47 6.29 29.65 0.19 -1.28 16 16 C -0.11 -1.70 9.39 25.29 0.24 -1.46 16 17 C -0.12 -2.50 5.40 -17.63 -0.10 -2.60 16 18 C -0.01 -0.19 5.14 -19.91 -0.10 -0.30 16 19 C -0.16 -2.76 9.86 22.62 0.22 -2.54 16 20 C 0.09 1.59 11.17 84.60 0.94 2.54 16 21 N -0.52 -10.80 10.35 -196.18 -2.03 -12.83 16 22 C 0.09 1.71 11.17 84.60 0.94 2.66 16 23 C -0.17 -3.21 9.80 22.61 0.22 -2.99 16 24 C 0.16 4.04 6.26 85.42 0.54 4.57 16 25 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 26 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 27 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 28 H 0.11 3.62 7.88 -2.39 -0.02 3.60 16 29 H 0.11 3.65 7.82 -2.39 -0.02 3.63 16 30 H 0.10 1.76 6.01 -2.39 -0.01 1.75 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.12 1.65 7.94 -2.91 -0.02 1.62 16 35 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 37 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.06 2.11 7.21 -2.39 -0.02 2.10 16 Total: -1.00 -80.57 338.31 4.09 -76.48 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.03 Total: 9.87 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 5.27 Total: -10.27 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -4.18 Total: -92.02 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -0.05 Total: -29.97 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -80.57 4.09 -76.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360598974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.003 kcal (2) G-P(sol) polarization free energy of solvation -80.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds