Wall clock time and date at job start Tue Mar 31 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00248 * 2 1 4 4 H 1.48502 * 109.47199 * 240.00037 * 3 2 1 5 5 H 1.48504 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99778 * 3 2 1 7 7 C 1.37878 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.53040 * 109.45992 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31186 * 181.37058 * 10 9 7 12 12 N 1.46929 * 108.77719 * 305.36545 * 11 10 9 13 13 C 1.34771 * 120.63153 * 233.58384 * 12 11 10 14 14 O 1.21697 * 120.00036 * 5.24512 * 13 12 11 15 15 C 1.46428 * 119.99965 * 185.23556 * 13 12 11 16 16 C 1.34805 * 120.00066 * 175.02239 * 15 13 12 17 17 C 1.47208 * 120.00088 * 180.02562 * 16 15 13 18 18 C 1.40263 * 120.58739 * 180.02562 * 17 16 15 19 19 C 1.38285 * 118.26983 * 179.97438 * 18 17 16 20 20 C 1.38394 * 119.33278 * 0.02562 * 19 18 17 21 21 N 1.31934 * 121.13803 * 359.97438 * 20 19 18 22 22 C 1.31662 * 121.90371 * 359.72523 * 21 20 19 23 23 C 1.46928 * 118.73699 * 53.86231 * 12 11 10 24 24 C 1.53038 * 109.44745 * 300.05867 * 9 7 2 25 25 H 0.97006 * 119.99940 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.45870 * 60.02351 * 9 7 2 27 27 H 1.09007 * 109.49711 * 61.42292 * 10 9 7 28 28 H 1.08997 * 109.50091 * 301.32677 * 10 9 7 29 29 H 1.09001 * 109.59054 * 185.58193 * 11 10 9 30 30 H 1.09001 * 109.70375 * 65.22652 * 11 10 9 31 31 H 1.08001 * 119.99689 * 355.30256 * 15 13 12 32 32 H 1.08003 * 120.00260 * 0.02562 * 16 15 13 33 33 H 1.08008 * 120.86576 * 359.95710 * 18 17 16 34 34 H 1.08008 * 120.33528 * 180.02562 * 19 18 17 35 35 H 1.08003 * 119.42949 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.73813 * 180.26669 * 22 21 20 37 37 H 1.08998 * 109.58859 * 65.92172 * 23 12 11 38 38 H 1.08994 * 109.58863 * 186.35439 * 23 12 11 39 39 H 1.08997 * 109.49806 * 298.57353 * 24 9 7 40 40 H 1.09006 * 109.49783 * 58.67109 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2456 -3.6622 0.0005 11 6 1.4765 -4.9866 -0.0340 12 7 0.5223 -5.0087 1.0830 13 6 0.5114 -6.0348 1.9567 14 8 1.3574 -6.9064 1.8821 15 6 -0.5181 -6.1007 2.9958 16 6 -0.5905 -7.1760 3.8057 17 6 -1.6259 -7.2425 4.8500 18 6 -1.7121 -8.3551 5.6997 19 6 -2.7028 -8.3673 6.6644 20 6 -3.5695 -7.2926 6.7596 21 7 -3.4659 -6.2584 5.9470 22 6 -2.5370 -6.1953 5.0161 23 6 -0.4241 -3.8939 1.2258 24 6 0.3697 -2.5787 1.2492 25 1 -0.4850 0.8401 -0.0004 26 1 0.6250 -2.5571 -0.8900 27 1 2.8556 -3.6193 0.9029 28 1 2.8881 -3.5916 -0.8771 29 1 2.1749 -5.8175 0.0656 30 1 0.9371 -5.0739 -0.9772 31 1 -1.2223 -5.2899 3.1104 32 1 0.1111 -7.9886 3.6884 33 1 -1.0228 -9.1810 5.6029 34 1 -2.7993 -9.2071 7.3367 35 1 -4.3442 -7.3007 7.5122 36 1 -2.4814 -5.3297 4.3725 37 1 -1.1154 -3.8912 0.3831 38 1 -0.9799 -4.0034 2.1569 39 1 0.9971 -2.5457 2.1399 40 1 -0.3228 -1.7370 1.2600 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492458558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:58 Heat of formation + Delta-G solvation = 11.557899 kcal Electronic energy + Delta-G solvation = -21608.632370 eV Core-core repulsion = 18388.319216 eV Total energy + Delta-G solvation = -3220.313153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38171 -39.63250 -36.89428 -34.64671 -33.53716 -32.56430 -31.40901 -30.28358 -29.66842 -26.41488 -24.84463 -23.85252 -22.96798 -22.42633 -21.11829 -19.42022 -18.26508 -17.74630 -17.04438 -16.39460 -16.17034 -15.40275 -15.15459 -14.71175 -14.54709 -14.18053 -14.05163 -13.57401 -13.35059 -13.14751 -12.87999 -12.79637 -12.36308 -12.04742 -11.99610 -11.51081 -11.29195 -10.96648 -10.92800 -10.67896 -10.41265 -10.13813 -9.93775 -9.75686 -9.71127 -9.46917 -9.19207 -8.95040 -8.64840 -8.39212 -7.99747 -6.04710 -4.10859 0.24979 0.96778 1.84816 3.29146 3.33992 3.36952 3.41942 3.44001 3.71672 4.13565 4.39837 4.45332 4.51443 4.60038 4.71001 4.94757 5.07225 5.21208 5.25582 5.49625 5.59894 5.70446 5.78025 5.78283 5.90194 6.05254 6.12670 6.19371 6.21475 6.28228 6.41649 6.43407 6.63375 6.87607 7.01725 7.12109 7.25446 7.64159 7.68633 7.88186 7.89786 8.01700 8.38319 8.49905 8.92221 9.54333 11.00776 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.003398 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.127491 B = 8239.186209 C = 9214.504703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.592 5.592 13 C 0.540 3.460 14 O -0.562 6.562 15 C -0.185 4.185 16 C -0.041 4.041 17 C -0.115 4.115 18 C -0.059 4.059 19 C -0.174 4.174 20 C 0.099 3.901 21 N -0.483 5.483 22 C 0.115 3.885 23 C 0.100 3.900 24 C -0.124 4.124 25 H 0.261 0.739 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 -14.584 10.016 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.323 5.323 13 C 0.330 3.670 14 O -0.444 6.444 15 C -0.206 4.206 16 C -0.061 4.061 17 C -0.117 4.117 18 C -0.085 4.085 19 C -0.194 4.194 20 C -0.058 4.058 21 N -0.190 5.190 22 C -0.043 4.043 23 C -0.022 4.022 24 C -0.163 4.163 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.155 0.845 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.822 -14.174 10.031 18.656 hybrid contribution 0.987 0.370 -0.050 1.056 sum -5.835 -13.803 9.982 18.006 Atomic orbital electron populations 1.69819 1.05835 1.26614 1.50814 1.24955 0.94884 0.99052 0.95042 0.86671 0.79636 0.83153 0.78622 1.20317 1.21292 1.20331 1.21165 0.92927 0.90569 1.50450 0.92752 1.18633 0.92644 0.91736 0.93973 1.22009 0.98937 0.94145 1.01052 1.21724 0.91780 0.99890 0.87702 1.48151 1.35631 1.20815 1.27671 1.18211 0.84966 0.81818 0.81961 1.90749 1.39828 1.39906 1.73939 1.23244 1.00201 0.99777 0.97333 1.22145 0.94657 0.98094 0.91252 1.20087 0.97754 0.96177 0.97669 1.21826 0.96782 0.96989 0.92867 1.22104 0.96822 1.00541 0.99929 1.22915 0.97436 0.89015 0.96398 1.67674 1.21103 1.25853 1.04412 1.23217 0.89400 0.97302 0.94393 1.22245 0.91648 0.87508 1.00811 1.22117 1.00049 0.94444 0.99659 0.92892 0.95426 0.92905 0.92090 0.90266 0.92061 0.84856 0.84492 0.84305 0.84500 0.82652 0.82139 0.91706 0.91302 0.94136 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.20 11.30 55.43 0.63 -23.58 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.51 -13.57 8.56 -34.44 -0.29 -13.87 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 10 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 11 C 0.11 2.02 6.44 -3.71 -0.02 2.00 16 12 N -0.59 -10.55 2.97 -174.14 -0.52 -11.07 16 13 C 0.54 9.38 7.62 -12.97 -0.10 9.28 16 14 O -0.56 -11.20 15.66 5.19 0.08 -11.11 16 15 C -0.19 -2.51 8.74 -37.50 -0.33 -2.84 16 16 C -0.04 -0.49 9.48 -37.16 -0.35 -0.84 16 17 C -0.11 -1.22 5.88 -104.91 -0.62 -1.84 16 18 C -0.06 -0.51 9.95 -38.80 -0.39 -0.90 16 19 C -0.17 -1.32 10.09 -39.51 -0.40 -1.72 16 20 C 0.10 0.88 11.17 -17.45 -0.19 0.68 16 21 N -0.48 -5.59 10.34 -12.83 -0.13 -5.72 16 22 C 0.11 1.29 10.59 -17.04 -0.18 1.11 16 23 C 0.10 1.73 6.34 -3.48 -0.02 1.71 16 24 C -0.12 -2.69 5.17 -26.39 -0.14 -2.83 16 25 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.08 1.43 6.99 -51.93 -0.36 1.07 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.13 1.57 3.94 -52.49 -0.21 1.36 16 32 H 0.14 1.64 7.53 -52.48 -0.40 1.24 16 33 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 35 H 0.16 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.16 1.62 6.19 -52.48 -0.32 1.30 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.00 5.37 -51.93 -0.28 0.72 16 39 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.11 2.53 6.03 -51.93 -0.31 2.22 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -30.47 328.95 -8.69 -39.16 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.23 Total: 1.81 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.46 Total: -10.20 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.02 Total: -40.36 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.47 -8.69 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492458558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.721 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds