Wall clock time and date at job start Tue Mar 31 2020 05:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00248 * 2 1 4 4 H 1.48502 * 109.47199 * 240.00037 * 3 2 1 5 5 H 1.48504 * 109.47056 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99778 * 3 2 1 7 7 C 1.37878 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00150 * 0.02562 * 7 2 1 10 10 C 1.53040 * 109.45992 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31186 * 181.37058 * 10 9 7 12 12 N 1.46929 * 108.77719 * 305.36545 * 11 10 9 13 13 C 1.34771 * 120.63153 * 233.58384 * 12 11 10 14 14 O 1.21697 * 120.00036 * 5.24512 * 13 12 11 15 15 C 1.46428 * 119.99965 * 185.23556 * 13 12 11 16 16 C 1.34805 * 120.00066 * 175.02239 * 15 13 12 17 17 C 1.47208 * 120.00088 * 180.02562 * 16 15 13 18 18 C 1.40263 * 120.58739 * 180.02562 * 17 16 15 19 19 C 1.38285 * 118.26983 * 179.97438 * 18 17 16 20 20 C 1.38394 * 119.33278 * 0.02562 * 19 18 17 21 21 N 1.31934 * 121.13803 * 359.97438 * 20 19 18 22 22 C 1.31662 * 121.90371 * 359.72523 * 21 20 19 23 23 C 1.46928 * 118.73699 * 53.86231 * 12 11 10 24 24 C 1.53038 * 109.44745 * 300.05867 * 9 7 2 25 25 H 0.97006 * 119.99940 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.45870 * 60.02351 * 9 7 2 27 27 H 1.09007 * 109.49711 * 61.42292 * 10 9 7 28 28 H 1.08997 * 109.50091 * 301.32677 * 10 9 7 29 29 H 1.09001 * 109.59054 * 185.58193 * 11 10 9 30 30 H 1.09001 * 109.70375 * 65.22652 * 11 10 9 31 31 H 1.08001 * 119.99689 * 355.30256 * 15 13 12 32 32 H 1.08003 * 120.00260 * 0.02562 * 16 15 13 33 33 H 1.08008 * 120.86576 * 359.95710 * 18 17 16 34 34 H 1.08008 * 120.33528 * 180.02562 * 19 18 17 35 35 H 1.08003 * 119.42949 * 179.97438 * 20 19 18 36 36 H 1.08005 * 119.73813 * 180.26669 * 22 21 20 37 37 H 1.08998 * 109.58859 * 65.92172 * 23 12 11 38 38 H 1.08994 * 109.58863 * 186.35439 * 23 12 11 39 39 H 1.08997 * 109.49806 * 298.57353 * 24 9 7 40 40 H 1.09006 * 109.49783 * 58.67109 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2456 -3.6622 0.0005 11 6 1.4765 -4.9866 -0.0340 12 7 0.5223 -5.0087 1.0830 13 6 0.5114 -6.0348 1.9567 14 8 1.3574 -6.9064 1.8821 15 6 -0.5181 -6.1007 2.9958 16 6 -0.5905 -7.1760 3.8057 17 6 -1.6259 -7.2425 4.8500 18 6 -1.7121 -8.3551 5.6997 19 6 -2.7028 -8.3673 6.6644 20 6 -3.5695 -7.2926 6.7596 21 7 -3.4659 -6.2584 5.9470 22 6 -2.5370 -6.1953 5.0161 23 6 -0.4241 -3.8939 1.2258 24 6 0.3697 -2.5787 1.2492 25 1 -0.4850 0.8401 -0.0004 26 1 0.6250 -2.5571 -0.8900 27 1 2.8556 -3.6193 0.9029 28 1 2.8881 -3.5916 -0.8771 29 1 2.1749 -5.8175 0.0656 30 1 0.9371 -5.0739 -0.9772 31 1 -1.2223 -5.2899 3.1104 32 1 0.1111 -7.9886 3.6884 33 1 -1.0228 -9.1810 5.6029 34 1 -2.7993 -9.2071 7.3367 35 1 -4.3442 -7.3007 7.5122 36 1 -2.4814 -5.3297 4.3725 37 1 -1.1154 -3.8912 0.3831 38 1 -0.9799 -4.0034 2.1569 39 1 0.9971 -2.5457 2.1399 40 1 -0.3228 -1.7370 1.2600 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492458558.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:57 Heat of formation + Delta-G solvation = -5.367047 kcal Electronic energy + Delta-G solvation = -21609.366291 eV Core-core repulsion = 18388.319216 eV Total energy + Delta-G solvation = -3221.047074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28850 -40.85054 -38.45481 -35.58894 -35.33276 -33.37123 -33.00209 -31.79872 -30.71264 -28.12276 -25.99754 -24.76907 -24.32421 -23.90025 -22.34669 -20.89113 -19.53051 -18.91723 -18.28963 -17.81191 -17.34978 -16.55276 -16.43589 -16.21623 -15.91948 -15.04653 -14.97292 -14.93546 -14.69790 -14.54675 -14.33496 -13.99313 -13.95035 -13.37918 -13.15835 -12.90701 -12.80416 -12.62714 -12.48061 -12.14206 -11.95266 -11.84312 -11.49040 -11.07444 -11.00550 -10.70204 -10.62157 -10.43220 -10.38140 -9.68090 -9.35325 -8.07516 -6.20644 -0.60279 0.29477 0.91494 1.42899 1.43478 1.50801 2.08866 2.26256 2.44500 2.92339 3.18899 3.36076 3.51244 3.80017 3.92184 3.97415 4.03951 4.14017 4.23423 4.31598 4.39135 4.48896 4.55753 4.58761 4.73441 4.81313 4.86026 4.96535 4.98471 5.07696 5.18436 5.19933 5.31230 5.37971 5.43844 5.58056 5.65421 5.72319 5.99196 6.13321 6.39606 6.49999 6.88330 6.97359 7.14293 7.46870 8.95632 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.021885 B = 0.003398 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.127491 B = 8239.186209 C = 9214.504703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.046 0.954 9 C 0.045 3.955 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.599 5.599 13 C 0.540 3.460 14 O -0.594 6.594 15 C -0.213 4.213 16 C -0.008 4.008 17 C -0.135 4.135 18 C -0.056 4.056 19 C -0.167 4.167 20 C 0.095 3.905 21 N -0.515 5.515 22 C 0.103 3.897 23 C 0.111 3.889 24 C -0.116 4.116 25 H 0.262 0.738 26 H 0.005 0.995 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.026 0.974 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 -16.075 11.683 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.575 4.575 8 H 0.064 0.936 9 C 0.027 3.973 10 C -0.152 4.152 11 C -0.006 4.006 12 N -0.329 5.329 13 C 0.333 3.667 14 O -0.478 6.478 15 C -0.233 4.233 16 C -0.029 4.029 17 C -0.137 4.137 18 C -0.082 4.082 19 C -0.186 4.186 20 C -0.061 4.061 21 N -0.223 5.223 22 C -0.054 4.054 23 C -0.011 4.011 24 C -0.155 4.155 25 H 0.071 0.929 26 H 0.023 0.977 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.167 0.833 32 H 0.155 0.845 33 H 0.180 0.820 34 H 0.191 0.809 35 H 0.200 0.800 36 H 0.179 0.821 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.045 0.955 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.660 -15.665 11.699 20.998 hybrid contribution 1.195 0.732 -0.444 1.470 sum -6.464 -14.933 11.255 19.785 Atomic orbital electron populations 1.69932 1.06749 1.27213 1.51088 1.25621 0.95716 1.01888 0.94837 0.85773 0.78550 0.79702 0.78561 1.19988 1.20768 1.20121 1.21517 0.92882 0.92315 1.50770 0.93557 1.18607 0.93048 0.91859 0.93792 1.21853 0.98345 0.94394 1.00577 1.21610 0.92008 0.98309 0.88693 1.48171 1.35652 1.21231 1.27831 1.18730 0.85129 0.80908 0.81975 1.90722 1.41303 1.40927 1.74816 1.23046 1.00708 1.01671 0.97870 1.22249 0.93744 0.96875 0.89986 1.20049 0.97907 0.97351 0.98419 1.22212 0.97140 0.96715 0.92093 1.22489 0.95458 1.01000 0.99646 1.23504 0.98018 0.88572 0.96004 1.67690 1.21772 1.27480 1.05369 1.23319 0.89720 0.97717 0.94689 1.22110 0.90997 0.85141 1.02824 1.21883 0.99383 0.96163 0.98021 0.92885 0.97670 0.94163 0.91717 0.90061 0.90877 0.83349 0.84479 0.81954 0.80919 0.80027 0.82060 0.91165 0.88104 0.95469 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.18 11.30 21.45 0.24 -49.94 16 2 C 0.02 1.00 5.30 84.65 0.45 1.45 16 3 Si 0.95 42.93 29.54 68.60 2.03 44.96 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 7 C -0.54 -29.06 8.56 25.60 0.22 -28.84 16 8 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 9 C 0.05 2.19 2.06 -11.51 -0.02 2.17 16 10 C -0.11 -4.71 5.30 30.67 0.16 -4.55 16 11 C 0.12 4.22 6.44 86.36 0.56 4.78 16 12 N -0.60 -21.14 2.97 -823.07 -2.44 -23.58 16 13 C 0.54 18.45 7.62 86.38 0.66 19.11 16 14 O -0.59 -23.45 15.66 -4.34 -0.07 -23.52 16 15 C -0.21 -5.55 8.74 23.62 0.21 -5.35 16 16 C -0.01 -0.18 9.48 23.84 0.23 0.05 16 17 C -0.14 -2.61 5.88 -20.05 -0.12 -2.73 16 18 C -0.06 -0.79 9.95 22.77 0.23 -0.56 16 19 C -0.17 -1.88 10.09 22.32 0.23 -1.65 16 20 C 0.10 1.41 11.17 84.71 0.95 2.35 16 21 N -0.51 -11.05 10.34 -194.51 -2.01 -13.07 16 22 C 0.10 2.17 10.59 85.10 0.90 3.07 16 23 C 0.11 3.82 6.34 86.51 0.55 4.37 16 24 C -0.12 -5.12 5.17 30.82 0.16 -4.96 16 25 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.08 2.93 6.99 -2.39 -0.02 2.92 16 30 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.15 3.31 3.94 -2.91 -0.01 3.30 16 32 H 0.14 3.06 7.53 -2.91 -0.02 3.03 16 33 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.16 3.15 6.19 -2.91 -0.02 3.13 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.10 2.82 5.37 -2.39 -0.01 2.80 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 4.01 6.03 -2.38 -0.01 3.99 16 Total: -1.00 -66.60 328.95 4.14 -62.46 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.05 Total: 13.99 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.34 Total: -11.30 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -4.21 Total: -86.59 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.07 Total: -23.52 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -66.60 4.14 -62.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492458558.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.095 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds