Wall clock time and date at job start Tue Mar 31 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38358 * 119.85245 * 2 1 4 4 C 1.37961 * 120.14654 * 179.97438 * 3 2 1 5 5 C 1.39578 * 119.85318 * 359.97438 * 4 3 2 6 6 C 1.47821 * 120.14615 * 179.97438 * 5 4 3 7 7 N 1.31220 * 125.72727 * 180.31148 * 6 5 4 8 8 C 1.34156 * 108.64855 * 180.14684 * 7 6 5 9 9 C 1.50697 * 126.08144 * 179.82558 * 8 7 6 10 10 C 1.52997 * 109.47466 * 304.69587 * 9 8 7 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 8 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46800 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00575 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99722 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00036 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47405 * 59.99892 * 17 15 13 19 19 H 1.48506 * 109.47027 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47090 * 299.99898 * 17 15 13 21 21 C 1.34547 * 107.83618 * 359.56908 * 8 7 6 22 22 O 1.34427 * 125.72560 * 359.97438 * 6 5 4 23 23 C 1.39577 * 119.70768 * 0.25277 * 5 4 3 24 24 C 1.37957 * 119.85148 * 359.51774 * 23 5 4 25 25 H 1.09002 * 109.46858 * 90.00995 * 1 2 3 26 26 H 1.09004 * 109.47354 * 210.00153 * 1 2 3 27 27 H 1.08997 * 109.47550 * 330.00796 * 1 2 3 28 28 H 1.07999 * 119.92909 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.08080 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47120 * 184.69340 * 9 8 7 31 31 H 1.08998 * 109.46862 * 64.70142 * 9 8 7 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 34 34 H 1.00902 * 111.00582 * 303.95797 * 11 10 9 35 35 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 36 36 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 37 37 H 0.96998 * 120.00185 * 179.97438 * 16 15 13 38 38 H 1.08008 * 126.36193 * 180.22253 * 21 8 7 39 39 H 1.07996 * 120.06932 * 179.72075 * 23 5 4 40 40 H 1.08007 * 119.92793 * 180.25301 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2762 0.0001 0.0016 6 6 5.7544 0.0001 0.0016 7 7 6.5207 -1.0651 -0.0032 8 6 7.8031 -0.6711 0.0018 9 6 9.0091 -1.5746 0.0026 10 6 8.9215 -2.5413 1.1853 11 7 10.0969 -3.4224 1.1856 12 6 10.0472 -4.3660 2.3105 13 6 11.2666 -5.2508 2.2781 14 1 12.0050 -5.1245 1.5001 15 6 11.4397 -6.2215 3.2419 16 7 10.5409 -6.3750 4.1895 17 14 12.9517 -7.3178 3.2023 18 1 14.1732 -6.4807 3.3129 19 1 12.9013 -8.2718 4.3393 20 1 12.9828 -8.0722 1.9236 21 6 7.8208 0.6742 0.0004 22 8 6.5393 1.0914 0.0002 23 6 3.5753 -1.2069 -0.0032 24 6 2.1957 -1.1999 0.0011 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6521 2.1332 0.0004 29 1 4.1117 2.1444 0.0001 30 1 9.9137 -0.9730 0.0913 31 1 9.0393 -2.1410 -0.9282 32 1 8.0169 -3.1429 1.0966 33 1 8.8914 -1.9748 2.1160 34 1 10.1830 -3.9110 0.3070 35 1 10.0254 -3.8119 3.2488 36 1 9.1501 -4.9800 2.2301 37 1 10.6624 -7.0581 4.8673 38 1 8.6990 1.3030 0.0000 39 1 4.1118 -2.1442 -0.0069 40 1 1.6521 -2.1332 0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562985730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:19 Heat of formation + Delta-G solvation = 33.428633 kcal Electronic energy + Delta-G solvation = -20597.946308 eV Core-core repulsion = 17378.581541 eV Total energy + Delta-G solvation = -3219.364767 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.30721 -39.53150 -36.21424 -34.72702 -33.82242 -32.59139 -31.34294 -31.01118 -28.91754 -27.11386 -25.85038 -23.33581 -23.02553 -22.41598 -21.26081 -20.90552 -20.51864 -17.77218 -16.69525 -16.38716 -16.19382 -15.58952 -15.54760 -14.96198 -14.58729 -14.29629 -14.13535 -13.77907 -13.74163 -13.52857 -13.37183 -12.59525 -12.56293 -12.23793 -12.12283 -11.82698 -11.72822 -11.34559 -11.29466 -11.04172 -10.77007 -10.66145 -10.58673 -10.36572 -9.89346 -9.54814 -9.28856 -9.14816 -8.44316 -8.24548 -7.25841 -5.99440 -4.01630 0.43694 1.08566 1.71025 2.58144 2.68847 3.36071 3.39556 3.42783 3.52772 3.79383 4.44919 4.47008 4.52002 4.68528 4.73637 4.85342 5.00285 5.07473 5.21897 5.33129 5.36040 5.37047 5.48256 5.54994 5.59290 5.67490 5.70281 5.77982 5.86178 5.97999 6.10112 6.16668 6.23434 6.31474 6.48943 6.57063 6.58992 7.30498 7.47497 7.70140 7.81350 8.16534 8.43214 8.65133 9.07479 9.62919 11.11733 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.002521 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.487095 B =11103.067138 C =12053.361208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 C -0.124 4.124 4 C -0.087 4.087 5 C -0.019 4.019 6 C 0.224 3.776 7 N -0.460 5.460 8 C 0.007 3.993 9 C -0.038 4.038 10 C 0.067 3.933 11 N -0.692 5.692 12 C 0.194 3.806 13 C -0.514 4.514 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.900 3.100 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.077 4.077 22 O -0.200 6.200 23 C -0.065 4.065 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.129 0.871 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.328 0.672 35 H 0.027 0.973 36 H -0.013 1.013 37 H 0.262 0.738 38 H 0.219 0.781 39 H 0.140 0.860 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.542 17.274 -10.601 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.106 4.106 5 C -0.020 4.020 6 C 0.020 3.980 7 N -0.189 5.189 8 C -0.115 4.115 9 C -0.076 4.076 10 C -0.063 4.063 11 N -0.322 5.322 12 C 0.068 3.932 13 C -0.553 4.553 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.147 4.147 22 O -0.087 6.087 23 C -0.085 4.085 24 C -0.140 4.140 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.147 0.853 29 H 0.148 0.852 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.045 0.955 36 H 0.005 0.995 37 H 0.071 0.929 38 H 0.235 0.765 39 H 0.158 0.842 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.404 17.036 -10.086 27.031 hybrid contribution 0.560 -0.490 -0.127 0.755 sum -17.844 16.546 -10.213 26.391 Atomic orbital electron populations 1.20848 0.90839 1.03130 1.02594 1.20139 0.96427 0.93142 0.97475 1.20924 0.93465 0.97895 1.01897 1.21210 0.94400 0.97024 0.98009 1.17274 0.84008 0.94824 1.05924 1.23772 0.93031 0.78996 1.02172 1.70543 1.01828 1.29238 1.17295 1.21920 0.93177 0.92816 1.03558 1.20023 0.91216 0.96071 1.00263 1.21739 0.93127 0.94887 0.96558 1.60679 1.38261 1.25606 1.07696 1.19535 0.95935 0.89081 0.88662 1.21160 1.06463 1.15722 1.11959 0.91970 1.25009 0.96772 0.97487 0.95410 1.69960 1.34879 1.34093 1.14853 0.86527 0.83108 0.80135 0.77407 1.20161 1.21364 1.20253 1.24938 0.84508 0.96238 1.09004 1.84454 1.17051 1.37003 1.70157 1.21243 0.93930 0.97470 0.95815 1.21017 0.93521 0.98013 1.01429 0.90833 0.91184 0.91314 0.85347 0.85188 0.89428 0.90397 0.95441 0.92037 0.85569 0.95501 0.99535 0.92865 0.76507 0.84173 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.00 36.00 0.36 -0.25 16 2 C -0.07 -0.57 5.89 -104.54 -0.62 -1.18 16 3 C -0.12 -0.99 9.68 -39.64 -0.38 -1.38 16 4 C -0.09 -0.84 9.72 -39.18 -0.38 -1.23 16 5 C -0.02 -0.23 5.87 -104.98 -0.62 -0.85 16 6 C 0.22 3.19 7.90 -13.89 -0.11 3.08 16 7 N -0.46 -7.40 10.90 -7.97 -0.09 -7.49 16 8 C 0.01 0.11 6.36 -82.88 -0.53 -0.42 16 9 C -0.04 -0.56 6.04 -27.89 -0.17 -0.73 16 10 C 0.07 1.29 5.66 -3.83 -0.02 1.26 16 11 N -0.69 -15.41 6.49 -115.06 -0.75 -16.16 16 12 C 0.19 5.32 5.44 -4.98 -0.03 5.29 16 13 C -0.51 -14.96 9.32 -34.44 -0.32 -15.28 16 14 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.52 13.29 55.43 0.74 -26.79 16 17 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.08 -0.94 12.06 29.43 0.35 -0.59 16 22 O -0.20 -2.65 10.52 4.07 0.04 -2.60 16 23 C -0.07 -0.74 9.69 -39.19 -0.38 -1.11 16 24 C -0.12 -1.09 9.68 -39.64 -0.38 -1.47 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.13 1.10 7.90 -52.49 -0.41 0.68 16 30 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.33 6.90 8.72 -39.29 -0.34 6.56 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H -0.01 -0.38 8.14 -51.93 -0.42 -0.81 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.22 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.14 1.66 7.83 -52.49 -0.41 1.25 16 40 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -33.44 348.69 -8.92 -42.36 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -5.78 Total: 1.76 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -3.32 Total: -13.36 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.10 Total: -50.44 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.44 -8.92 -42.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562985730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.786 kcal (2) G-P(sol) polarization free energy of solvation -33.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds