Wall clock time and date at job start Tue Mar 31 2020 06:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38358 * 119.85245 * 2 1 4 4 C 1.37961 * 120.14654 * 179.97438 * 3 2 1 5 5 C 1.39578 * 119.85318 * 359.97438 * 4 3 2 6 6 C 1.47821 * 120.14615 * 179.97438 * 5 4 3 7 7 N 1.31220 * 125.72727 * 180.31148 * 6 5 4 8 8 C 1.34156 * 108.64855 * 180.14684 * 7 6 5 9 9 C 1.50697 * 126.08144 * 179.82558 * 8 7 6 10 10 C 1.52997 * 109.47466 * 304.69587 * 9 8 7 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 9 8 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.46800 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00575 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99722 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00036 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47405 * 59.99892 * 17 15 13 19 19 H 1.48506 * 109.47027 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47090 * 299.99898 * 17 15 13 21 21 C 1.34547 * 107.83618 * 359.56908 * 8 7 6 22 22 O 1.34427 * 125.72560 * 359.97438 * 6 5 4 23 23 C 1.39577 * 119.70768 * 0.25277 * 5 4 3 24 24 C 1.37957 * 119.85148 * 359.51774 * 23 5 4 25 25 H 1.09002 * 109.46858 * 90.00995 * 1 2 3 26 26 H 1.09004 * 109.47354 * 210.00153 * 1 2 3 27 27 H 1.08997 * 109.47550 * 330.00796 * 1 2 3 28 28 H 1.07999 * 119.92909 * 0.02562 * 3 2 1 29 29 H 1.08000 * 120.08080 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47120 * 184.69340 * 9 8 7 31 31 H 1.08998 * 109.46862 * 64.70142 * 9 8 7 32 32 H 1.09002 * 109.47153 * 59.99773 * 10 9 8 33 33 H 1.09001 * 109.46832 * 299.99964 * 10 9 8 34 34 H 1.00902 * 111.00582 * 303.95797 * 11 10 9 35 35 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 36 36 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 37 37 H 0.96998 * 120.00185 * 179.97438 * 16 15 13 38 38 H 1.08008 * 126.36193 * 180.22253 * 21 8 7 39 39 H 1.07996 * 120.06932 * 179.72075 * 23 5 4 40 40 H 1.08007 * 119.92793 * 180.25301 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.2000 0.0000 4 6 3.5752 1.2071 0.0005 5 6 4.2762 0.0001 0.0016 6 6 5.7544 0.0001 0.0016 7 7 6.5207 -1.0651 -0.0032 8 6 7.8031 -0.6711 0.0018 9 6 9.0091 -1.5746 0.0026 10 6 8.9215 -2.5413 1.1853 11 7 10.0969 -3.4224 1.1856 12 6 10.0472 -4.3660 2.3105 13 6 11.2666 -5.2508 2.2781 14 1 12.0050 -5.1245 1.5001 15 6 11.4397 -6.2215 3.2419 16 7 10.5409 -6.3750 4.1895 17 14 12.9517 -7.3178 3.2023 18 1 14.1732 -6.4807 3.3129 19 1 12.9013 -8.2718 4.3393 20 1 12.9828 -8.0722 1.9236 21 6 7.8208 0.6742 0.0004 22 8 6.5393 1.0914 0.0002 23 6 3.5753 -1.2069 -0.0032 24 6 2.1957 -1.1999 0.0011 25 1 -0.3633 -0.0002 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6521 2.1332 0.0004 29 1 4.1117 2.1444 0.0001 30 1 9.9137 -0.9730 0.0913 31 1 9.0393 -2.1410 -0.9282 32 1 8.0169 -3.1429 1.0966 33 1 8.8914 -1.9748 2.1160 34 1 10.1830 -3.9110 0.3070 35 1 10.0254 -3.8119 3.2488 36 1 9.1501 -4.9800 2.2301 37 1 10.6624 -7.0581 4.8673 38 1 8.6990 1.3030 0.0000 39 1 4.1118 -2.1442 -0.0069 40 1 1.6521 -2.1332 0.0015 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562985730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:19 Heat of formation + Delta-G solvation = 10.250906 kcal Electronic energy + Delta-G solvation = -20598.951370 eV Core-core repulsion = 17378.581541 eV Total energy + Delta-G solvation = -3220.369829 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.34269 -40.23792 -37.79317 -36.11998 -34.86443 -34.36128 -32.42112 -31.96923 -30.21558 -28.24168 -27.40405 -24.57929 -23.85919 -23.73590 -23.06815 -21.89724 -21.56013 -18.74478 -18.54180 -17.71939 -17.17268 -16.81773 -16.44670 -16.31919 -16.20817 -15.57851 -15.13250 -14.90685 -14.66546 -14.53563 -14.46675 -14.14089 -13.70932 -13.56903 -13.20891 -13.02492 -12.89102 -12.73568 -12.59867 -12.43835 -12.32674 -12.10861 -11.99108 -11.85708 -11.55979 -11.31090 -10.67346 -10.43409 -10.01136 -9.22147 -9.12476 -8.23830 -6.36356 -0.39680 0.36734 0.77535 1.41064 1.45753 1.53708 1.63035 1.65666 2.39642 2.75862 2.84853 3.09106 3.39660 3.80951 3.88322 3.97064 3.99046 4.03379 4.14677 4.30771 4.38988 4.44143 4.58542 4.61411 4.76444 4.78572 4.85241 4.88077 4.97254 5.01611 5.06114 5.09923 5.13903 5.23818 5.26655 5.38900 5.41747 5.58397 5.58962 5.91407 5.97679 6.37338 6.66220 6.67130 6.85765 7.34774 8.88158 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.002521 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.487095 B =11103.067138 C =12053.361208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.066 4.066 3 C -0.121 4.121 4 C -0.088 4.088 5 C -0.049 4.049 6 C 0.219 3.781 7 N -0.499 5.499 8 C -0.029 4.029 9 C -0.021 4.021 10 C 0.074 3.926 11 N -0.683 5.683 12 C 0.208 3.792 13 C -0.537 4.537 14 H 0.070 0.930 15 C -0.003 4.003 16 N -0.937 5.937 17 Si 0.980 3.020 18 H -0.265 1.265 19 H -0.283 1.283 20 H -0.264 1.264 21 C -0.054 4.054 22 O -0.200 6.200 23 C -0.084 4.084 24 C -0.127 4.127 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.141 0.859 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.006 0.994 33 H 0.049 0.951 34 H 0.338 0.662 35 H -0.003 1.003 36 H -0.044 1.044 37 H 0.266 0.734 38 H 0.262 0.738 39 H 0.120 0.880 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.674 18.728 -11.577 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.067 4.067 3 C -0.139 4.139 4 C -0.107 4.107 5 C -0.050 4.050 6 C 0.015 3.985 7 N -0.229 5.229 8 C -0.150 4.150 9 C -0.059 4.059 10 C -0.056 4.056 11 N -0.314 5.314 12 C 0.080 3.920 13 C -0.575 4.575 14 H 0.088 0.912 15 C -0.201 4.201 16 N -0.577 5.577 17 Si 0.803 3.197 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.189 1.189 21 C -0.124 4.124 22 O -0.086 6.086 23 C -0.103 4.103 24 C -0.145 4.145 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.177 0.823 29 H 0.159 0.841 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.155 0.845 35 H 0.015 0.985 36 H -0.027 1.027 37 H 0.074 0.926 38 H 0.278 0.722 39 H 0.138 0.862 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.540 18.506 -11.089 28.446 hybrid contribution 0.455 -0.879 0.182 1.006 sum -18.085 17.627 -10.907 27.509 Atomic orbital electron populations 1.20925 0.88466 1.04229 1.03668 1.20541 0.98117 0.92573 0.95472 1.21312 0.92835 0.99270 1.00450 1.21408 0.95302 0.96479 0.97539 1.17488 0.83190 0.96059 1.08305 1.24195 0.93912 0.78798 1.01586 1.70491 1.02891 1.30692 1.18848 1.21963 0.92668 0.94043 1.06342 1.19829 0.92602 0.95427 0.98034 1.21707 0.90891 0.94737 0.98298 1.60564 1.39719 1.24421 1.06656 1.19203 0.94502 0.89057 0.89263 1.21524 1.07016 1.16434 1.12539 0.91200 1.26067 1.00340 0.99026 0.94670 1.70109 1.37112 1.34894 1.15615 0.85286 0.78570 0.77895 0.77931 1.19019 1.20827 1.18902 1.25682 0.85111 0.95763 1.05799 1.84476 1.17428 1.36707 1.70022 1.21228 0.95072 0.96707 0.97337 1.21255 0.92598 0.99552 1.01077 0.89592 0.90568 0.89817 0.82254 0.84072 0.87086 0.89957 0.97588 0.93276 0.84512 0.98486 1.02676 0.92556 0.72220 0.86156 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.00 71.23 0.71 -0.16 16 2 C -0.07 -0.93 5.89 -19.81 -0.12 -1.05 16 3 C -0.12 -1.68 9.68 22.23 0.22 -1.46 16 4 C -0.09 -1.63 9.72 22.53 0.22 -1.41 16 5 C -0.05 -1.22 5.87 -20.10 -0.12 -1.34 16 6 C 0.22 6.42 7.90 87.32 0.69 7.11 16 7 N -0.50 -16.85 10.90 -293.20 -3.20 -20.05 16 8 C -0.03 -0.87 6.36 41.36 0.26 -0.61 16 9 C -0.02 -0.62 6.04 29.85 0.18 -0.44 16 10 C 0.07 2.93 5.66 86.30 0.49 3.42 16 11 N -0.68 -31.15 6.49 -517.93 -3.36 -34.51 16 12 C 0.21 11.86 5.44 85.55 0.47 12.32 16 13 C -0.54 -31.68 9.32 25.60 0.24 -31.45 16 14 H 0.07 3.93 7.81 -2.91 -0.02 3.91 16 15 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 16 N -0.94 -58.65 13.29 21.45 0.28 -58.37 16 17 Si 0.98 45.12 29.54 68.60 2.03 47.14 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 21 C -0.05 -1.24 12.06 66.97 0.81 -0.43 16 22 O -0.20 -5.16 10.52 -8.34 -0.09 -5.25 16 23 C -0.08 -2.01 9.69 22.53 0.22 -1.79 16 24 C -0.13 -2.24 9.68 22.23 0.22 -2.03 16 25 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.08 0.51 8.08 -2.38 -0.02 0.49 16 27 H 0.08 0.42 8.08 -2.39 -0.02 0.40 16 28 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 29 H 0.14 2.20 7.90 -2.91 -0.02 2.18 16 30 H 0.11 2.76 8.11 -2.39 -0.02 2.74 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.34 14.36 8.72 -89.69 -0.78 13.58 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H -0.04 -2.76 8.14 -2.39 -0.02 -2.78 16 37 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 38 H 0.26 3.29 8.06 -2.91 -0.02 3.26 16 39 H 0.12 3.23 7.83 -2.91 -0.02 3.21 16 40 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -75.05 348.69 0.86 -74.19 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.25 Total: 15.87 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: 4.94 Total: -19.03 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -6.27 Total: -112.92 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.09 Total: -5.25 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -75.05 0.86 -74.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562985730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.443 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds