Wall clock time and date at job start Tue Mar 31 2020 06:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86803 * 119.99902 * 2 1 4 4 H 1.48498 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47261 * 300.00250 * 3 2 1 6 6 H 1.48498 * 109.46832 * 60.00093 * 3 2 1 7 7 C 1.40028 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99776 * 194.06210 * 7 2 1 9 9 C 1.41540 * 120.00056 * 14.06098 * 7 2 1 10 10 C 1.41175 * 120.99702 * 201.15076 * 9 7 2 11 11 C 1.37591 * 119.01727 * 179.97438 * 10 9 7 12 12 N 1.32086 * 121.10451 * 359.72853 * 11 10 9 13 13 C 1.32469 * 122.23307 * 0.56546 * 12 11 10 14 14 N 1.39467 * 119.57676 * 179.71205 * 13 12 11 15 15 C 1.34771 * 120.00284 * 353.26196 * 14 13 12 16 16 O 1.21282 * 120.00082 * 4.63804 * 15 14 13 17 17 C 1.50706 * 120.00244 * 184.63105 * 15 14 13 18 18 C 1.52998 * 109.47113 * 180.02562 * 17 15 14 19 19 H 1.08994 * 110.43782 * 56.08505 * 18 17 15 20 20 C 1.54896 * 110.48533 * 293.54411 * 18 17 15 21 21 C 1.54885 * 102.74737 * 203.38241 * 20 18 17 22 22 C 1.54266 * 104.19808 * 37.94484 * 21 20 18 23 23 H 1.08993 * 117.41160 * 116.37039 * 22 21 20 24 24 C 1.53002 * 118.19656 * 270.99691 * 22 21 20 25 25 C 1.53873 * 106.59854 * 336.38845 * 22 21 20 26 26 H 1.09000 * 121.33061 * 138.06364 * 25 22 21 27 27 C 1.38593 * 120.83770 * 359.42996 * 13 12 11 28 28 H 0.97007 * 120.00535 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.49304 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.44809 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99643 * 172.99654 * 14 13 12 32 32 H 1.08998 * 109.46805 * 300.00547 * 17 15 14 33 33 H 1.08998 * 109.46934 * 60.00435 * 17 15 14 34 34 H 1.09002 * 110.75582 * 321.69845 * 20 18 17 35 35 H 1.09002 * 110.75535 * 84.87910 * 20 18 17 36 36 H 1.09000 * 110.48602 * 156.62134 * 21 20 18 37 37 H 1.09002 * 110.48940 * 279.12979 * 21 20 18 38 38 H 1.08995 * 117.45889 * 201.21604 * 24 22 21 39 39 H 1.08997 * 117.46494 * 346.04237 * 24 22 21 40 40 H 1.08009 * 120.59871 * 180.29600 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8826 2.3964 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0632 -1.2267 0.2267 9 6 1.3317 -2.4200 -0.2989 10 6 1.8554 -3.6661 0.1083 11 6 1.1644 -4.8144 -0.2031 12 7 0.0240 -4.7655 -0.8679 13 6 -0.5068 -3.6228 -1.2771 14 7 -1.7110 -3.6361 -1.9805 15 6 -2.2580 -4.8084 -2.3582 16 8 -1.7484 -5.8540 -2.0147 17 6 -3.5030 -4.8203 -3.2074 18 6 -3.9126 -6.2667 -3.4918 19 1 -4.0467 -6.8147 -2.5592 20 6 -2.8552 -6.9642 -4.3832 21 6 -3.6665 -8.1044 -5.0471 22 6 -5.0473 -7.4747 -5.3240 23 1 -5.3567 -7.3816 -6.3649 24 6 -6.1141 -7.5623 -4.2307 25 6 -5.2038 -6.3063 -4.3351 26 1 -5.6286 -5.3523 -4.6476 27 6 0.1165 -2.4141 -1.0102 28 1 -0.4851 0.8401 0.0004 29 1 2.7848 -3.7174 0.6560 30 1 1.5589 -5.7715 0.1045 31 1 -2.1569 -2.8016 -2.1944 32 1 -4.3088 -4.3122 -2.6777 33 1 -3.3060 -4.3064 -4.1482 34 1 -2.4694 -6.2760 -5.1353 35 1 -2.0434 -7.3662 -3.7770 36 1 -3.1951 -8.4151 -5.9795 37 1 -3.7606 -8.9515 -4.3676 38 1 -7.1549 -7.4495 -4.5339 39 1 -5.9367 -8.2569 -3.4097 40 1 -0.3222 -1.4844 -1.3415 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572572268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:00 Heat of formation + Delta-G solvation = 15.782756 kcal Electronic energy + Delta-G solvation = -21748.765188 eV Core-core repulsion = 18528.635238 eV Total energy + Delta-G solvation = -3220.129950 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.00852 -39.03420 -37.62607 -34.34522 -33.69873 -32.51399 -30.59158 -30.35168 -28.56285 -26.02851 -25.41676 -22.82017 -21.96093 -21.47804 -20.34965 -19.58305 -19.38889 -17.65094 -16.81324 -15.95698 -15.56553 -15.32471 -15.02809 -14.65365 -14.18104 -13.88674 -13.48841 -13.30103 -12.93966 -12.88296 -12.71485 -12.62168 -12.34935 -11.74076 -11.43777 -11.22423 -11.17631 -11.08984 -10.91150 -10.67780 -10.60143 -10.27102 -10.13648 -10.10666 -9.71382 -9.66468 -9.38570 -9.23692 -8.01199 -7.70094 -7.01836 -6.76828 -4.63322 2.58641 2.77063 3.00213 3.05683 3.21184 3.51108 3.52366 3.68977 3.83024 4.46155 4.61303 4.66768 4.72509 5.01206 5.11249 5.23808 5.31189 5.47085 5.48809 5.56863 5.63798 5.69612 5.72502 5.85022 5.93082 5.97874 6.06676 6.14497 6.20276 6.40880 6.53198 6.60979 6.68678 6.81982 6.95015 7.14567 7.41530 7.49013 7.80038 7.97255 8.23909 8.44700 8.71233 8.74858 8.95591 9.71890 10.04467 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.031263 B = 0.003299 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.415574 B = 8484.325673 C = 9089.987723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.450 4.450 8 H 0.082 0.918 9 C 0.139 3.861 10 C -0.286 4.286 11 C 0.118 3.882 12 N -0.554 5.554 13 C 0.335 3.665 14 N -0.661 5.661 15 C 0.496 3.504 16 O -0.480 6.480 17 C -0.132 4.132 18 C -0.044 4.044 19 H 0.082 0.918 20 C -0.116 4.116 21 C -0.097 4.097 22 C -0.165 4.165 23 H 0.104 0.896 24 C -0.157 4.157 25 C -0.163 4.163 26 H 0.110 0.890 27 C -0.247 4.247 28 H 0.281 0.719 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.407 0.593 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 -5.308 -8.647 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.482 4.482 8 H 0.100 0.900 9 C 0.131 3.869 10 C -0.310 4.310 11 C -0.037 4.037 12 N -0.273 5.273 13 C 0.111 3.889 14 N -0.307 5.307 15 C 0.281 3.719 16 O -0.351 6.351 17 C -0.173 4.173 18 C -0.062 4.062 19 H 0.101 0.899 20 C -0.153 4.153 21 C -0.135 4.135 22 C -0.183 4.183 23 H 0.122 0.878 24 C -0.194 4.194 25 C -0.181 4.181 26 H 0.128 0.872 27 C -0.273 4.273 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.242 0.758 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.072 -6.743 -8.633 14.881 hybrid contribution 0.460 2.220 0.112 2.270 sum -9.612 -4.523 -8.521 13.618 Atomic orbital electron populations 1.69757 1.07669 1.29115 1.34988 1.25979 0.94825 1.01574 0.91926 0.86175 0.80949 0.80499 0.78627 1.18303 1.19623 1.19866 1.19640 0.96984 0.90410 1.41127 0.90012 1.17589 0.90406 0.92259 0.86681 1.21878 1.04024 0.93901 1.11219 1.21750 0.90595 0.96672 0.94656 1.67222 1.14070 1.27096 1.18935 1.18248 0.86413 0.90840 0.93411 1.43512 1.22431 1.09240 1.55523 1.20676 0.85811 0.84170 0.81240 1.90750 1.61186 1.30767 1.52355 1.21714 0.96408 0.98735 1.00425 1.21272 0.92151 0.94326 0.98496 0.89921 1.22753 0.98018 0.96588 0.97939 1.21978 0.93015 0.98048 1.00438 1.23271 0.96716 1.02710 0.95646 0.87764 1.23418 0.95373 0.99846 1.00771 1.23691 0.98862 0.93118 1.02394 0.87192 1.21758 1.00962 0.95870 1.08687 0.90826 0.88092 0.85998 0.75834 0.89212 0.89210 0.91898 0.89686 0.91563 0.91556 0.88729 0.88919 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.21 10.60 55.55 0.59 -18.63 16 2 C 0.08 1.81 5.28 -17.35 -0.09 1.72 16 3 Si 0.91 17.81 29.58 -169.99 -5.03 12.78 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.45 -11.57 9.14 -37.65 -0.34 -11.92 16 8 H 0.08 2.02 7.89 -52.49 -0.41 1.60 16 9 C 0.14 3.67 5.64 -106.55 -0.60 3.07 16 10 C -0.29 -7.09 9.90 -38.70 -0.38 -7.47 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.66 16 12 N -0.55 -14.21 7.86 -12.52 -0.10 -14.31 16 13 C 0.34 8.17 7.41 -154.71 -1.15 7.03 16 14 N -0.66 -12.91 5.39 -11.49 -0.06 -12.97 16 15 C 0.50 9.11 7.57 -10.99 -0.08 9.03 16 16 O -0.48 -10.65 12.76 5.56 0.07 -10.58 16 17 C -0.13 -1.70 5.19 -27.88 -0.14 -1.84 16 18 C -0.04 -0.55 2.29 -88.96 -0.20 -0.76 16 19 H 0.08 1.19 8.02 -51.93 -0.42 0.77 16 20 C -0.12 -1.52 5.63 -24.74 -0.14 -1.66 16 21 C -0.10 -1.06 6.62 -25.07 -0.17 -1.23 16 22 C -0.17 -1.64 6.85 -89.50 -0.61 -2.25 16 23 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 24 C -0.16 -1.47 10.21 -25.42 -0.26 -1.73 16 25 C -0.16 -1.68 6.46 -88.19 -0.57 -2.25 16 26 H 0.11 1.01 8.05 -51.93 -0.42 0.59 16 27 C -0.25 -6.29 8.66 -38.48 -0.33 -6.63 16 28 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 29 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 30 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 31 H 0.41 6.55 8.70 -40.82 -0.36 6.19 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 34 H 0.06 0.81 8.02 -51.93 -0.42 0.40 16 35 H 0.08 1.34 7.05 -51.93 -0.37 0.98 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.14 3.42 5.88 -52.48 -0.31 3.11 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -30.35 330.48 -10.46 -40.81 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -5.63 Total: 12.15 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -5.28 Total: -14.23 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.43 Total: -45.90 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.35 -10.46 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572572268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.593 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds