Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86807 * 119.99855 * 2 1 4 4 H 1.48500 * 109.47001 * 270.00485 * 3 2 1 5 5 H 1.48495 * 109.47020 * 30.00298 * 3 2 1 6 6 H 1.48491 * 109.47075 * 150.00412 * 3 2 1 7 7 C 1.40029 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00499 * 196.80190 * 7 2 1 9 9 C 1.41548 * 119.99572 * 16.80398 * 7 2 1 10 10 C 1.41176 * 120.99152 * 203.66170 * 9 7 2 11 11 C 1.37595 * 119.01429 * 180.02562 * 10 9 7 12 12 N 1.32085 * 121.10640 * 359.97438 * 11 10 9 13 13 C 1.32470 * 122.23096 * 0.02562 * 12 11 10 14 14 N 1.39481 * 119.57787 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99898 * 5.16194 * 14 13 12 16 16 O 1.21277 * 119.99913 * 355.13801 * 15 14 13 17 17 C 1.50696 * 120.00111 * 174.85969 * 15 14 13 18 18 H 1.09006 * 115.54907 * 34.55039 * 17 15 14 19 19 C 1.53000 * 117.49970 * 248.88751 * 17 15 14 20 20 C 1.52994 * 117.50248 * 180.26009 * 17 15 14 21 21 H 1.09004 * 117.50161 * 0.02562 * 20 17 15 22 22 C 1.52999 * 117.50392 * 214.98004 * 20 17 15 23 23 C 1.53774 * 113.61692 * 159.13648 * 22 20 17 24 24 C 1.53958 * 87.02204 * 220.04797 * 23 22 20 25 25 C 1.53781 * 113.61304 * 61.52538 * 22 20 17 26 26 C 1.38593 * 120.84103 * 0.27018 * 13 12 11 27 27 H 0.97006 * 120.00588 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.49532 * 0.04181 * 10 9 7 29 29 H 1.08001 * 119.44977 * 179.97438 * 11 10 9 30 30 H 0.96993 * 119.99912 * 185.16073 * 14 13 12 31 31 H 1.08993 * 117.50005 * 359.97438 * 19 17 15 32 32 H 1.08999 * 117.49544 * 144.99753 * 19 17 15 33 33 H 1.09000 * 112.85109 * 290.33560 * 22 20 17 34 34 H 1.08995 * 113.61555 * 334.56773 * 23 22 20 35 35 H 1.09005 * 113.61452 * 105.47180 * 23 22 20 36 36 H 1.09001 * 113.54044 * 270.81291 * 24 23 22 37 37 H 1.08997 * 113.66805 * 139.92710 * 24 23 22 38 38 H 1.09001 * 113.61998 * 254.53494 * 25 22 20 39 39 H 1.08997 * 113.61269 * 25.35616 * 25 22 20 40 40 H 1.08000 * 120.60004 * 179.72974 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4403 0.6999 7 6 2.0076 -1.2126 -0.0005 8 1 3.0530 -1.2327 0.2698 9 6 1.3452 -2.4121 -0.3555 10 6 1.8229 -3.6647 0.0871 11 6 1.1477 -4.8051 -0.2827 12 7 0.0670 -4.7431 -1.0396 13 6 -0.4216 -3.5935 -1.4807 14 7 -1.5663 -3.5925 -2.2776 15 6 -2.2277 -4.7439 -2.5085 16 8 -1.7798 -5.7933 -2.0976 17 6 -3.5270 -4.7265 -3.2718 18 1 -3.5965 -3.9816 -4.0646 19 6 -4.8052 -5.0564 -2.4983 20 6 -4.2326 -6.0654 -3.4959 21 1 -3.7574 -6.9589 -3.0909 22 6 -4.9820 -6.2568 -4.8160 23 6 -5.2159 -7.7316 -5.1834 24 6 -4.8935 -7.3373 -6.6363 25 6 -4.0770 -6.1703 -6.0563 26 6 0.1937 -2.3923 -1.1655 27 1 -0.4851 0.8400 0.0004 28 1 2.7052 -3.7269 0.7070 29 1 1.5072 -5.7671 0.0516 30 1 -1.8864 -2.7631 -2.6656 31 1 -4.7063 -5.2864 -1.4375 32 1 -5.7156 -4.5287 -2.7823 33 1 -5.8792 -5.6417 -4.8865 34 1 -4.4867 -8.4120 -4.7437 35 1 -6.2449 -8.0601 -5.0373 36 1 -5.7671 -7.0188 -7.2050 37 1 -4.2881 -8.0732 -7.1653 38 1 -4.1878 -5.2402 -6.6138 39 1 -3.0356 -6.4218 -5.8552 40 1 -0.2055 -1.4577 -1.5308 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593093859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = 37.075605 kcal Electronic energy + Delta-G solvation = -21561.869657 eV Core-core repulsion = 18342.663034 eV Total energy + Delta-G solvation = -3219.206623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.03277 -38.98017 -37.77157 -35.51167 -34.26069 -33.68868 -30.55607 -28.78726 -26.46026 -25.99493 -25.71061 -24.10162 -21.97235 -21.41085 -20.76064 -19.51467 -19.37907 -17.64737 -17.10932 -15.98394 -15.61686 -15.23408 -15.09955 -14.40608 -14.29305 -14.20282 -13.83552 -13.26543 -12.92078 -12.61631 -12.59422 -12.53908 -12.33128 -12.16842 -11.83205 -11.45088 -11.24662 -10.92943 -10.91186 -10.76194 -10.60859 -10.28838 -10.16533 -9.95259 -9.83002 -9.72296 -9.36743 -9.30190 -8.01141 -7.71732 -7.02803 -6.81825 -4.62222 2.52098 2.77590 3.00673 3.04079 3.14751 3.33746 3.56199 3.83596 3.97906 4.46553 4.55532 4.59153 4.66684 4.77059 4.96940 5.00939 5.08591 5.32288 5.37393 5.56069 5.65325 5.68611 5.68990 5.71035 5.78013 5.84739 5.97797 6.07457 6.10735 6.26393 6.43370 6.59513 6.66894 6.80859 6.94627 7.09627 7.39174 7.46740 7.78295 7.94620 8.22712 8.42623 8.70346 8.73698 8.93297 9.69877 10.05191 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.003301 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.713825 B = 8481.370046 C = 9014.653206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.143 3.857 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.337 3.663 14 N -0.655 5.655 15 C 0.527 3.473 16 O -0.483 6.483 17 C -0.183 4.183 18 H 0.118 0.882 19 C -0.150 4.150 20 C -0.109 4.109 21 H 0.118 0.882 22 C -0.082 4.082 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.135 4.135 26 C -0.244 4.244 27 H 0.282 0.718 28 H 0.102 0.898 29 H 0.123 0.877 30 H 0.408 0.592 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 -4.645 -9.453 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.309 4.309 11 C -0.036 4.036 12 N -0.274 5.274 13 C 0.113 3.887 14 N -0.300 5.300 15 C 0.312 3.688 16 O -0.354 6.354 17 C -0.204 4.204 18 H 0.136 0.864 19 C -0.188 4.188 20 C -0.128 4.128 21 H 0.136 0.864 22 C -0.100 4.100 23 C -0.170 4.170 24 C -0.182 4.182 25 C -0.172 4.172 26 C -0.270 4.270 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.141 0.859 30 H 0.242 0.758 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.103 0.897 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.787 -6.076 -9.390 15.538 hybrid contribution 0.639 2.253 0.146 2.346 sum -10.148 -3.823 -9.244 14.249 Atomic orbital electron populations 1.69780 1.07697 1.29407 1.34362 1.25961 0.94766 1.01496 0.91880 0.86251 0.80522 0.80217 0.79411 1.19164 1.20223 1.18482 1.19587 0.97907 0.90698 1.40500 0.89944 1.17564 0.89846 0.92281 0.86790 1.21893 1.05285 0.93897 1.09862 1.21766 0.90950 0.96813 0.94022 1.67227 1.15471 1.26549 1.18195 1.18205 0.87204 0.90817 0.92497 1.43377 1.26141 1.10619 1.49873 1.19689 0.84613 0.84131 0.80405 1.90761 1.66552 1.29961 1.48095 1.22275 0.92516 1.02170 1.03438 0.86355 1.23051 0.94922 1.02446 0.98360 1.22371 1.00653 0.93425 0.96326 0.86424 1.22170 0.98083 0.97457 0.92272 1.22976 1.01707 0.96146 0.96206 1.22850 1.00147 0.98704 0.96509 1.22926 0.99359 0.98558 0.96390 1.21533 1.02587 0.95527 1.07304 0.90708 0.87993 0.85919 0.75776 0.88330 0.88111 0.89181 0.89809 0.91601 0.90442 0.91528 0.91670 0.89699 0.85488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.40 10.93 55.55 0.61 -18.79 16 2 C 0.08 1.89 5.20 -17.35 -0.09 1.80 16 3 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.75 9.12 -37.65 -0.34 -12.09 16 8 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 9 C 0.14 3.80 5.60 -106.55 -0.60 3.21 16 10 C -0.29 -7.10 9.90 -38.70 -0.38 -7.48 16 11 C 0.12 2.90 11.15 -17.68 -0.20 2.71 16 12 N -0.56 -14.45 7.85 -12.52 -0.10 -14.54 16 13 C 0.34 8.33 7.42 -154.69 -1.15 7.19 16 14 N -0.66 -13.18 5.39 -11.49 -0.06 -13.25 16 15 C 0.53 10.18 7.57 -10.99 -0.08 10.10 16 16 O -0.48 -11.31 14.51 5.56 0.08 -11.23 16 17 C -0.18 -2.51 5.74 -91.78 -0.53 -3.04 16 18 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 19 C -0.15 -1.81 9.92 -26.73 -0.27 -2.07 16 20 C -0.11 -1.35 5.04 -90.62 -0.46 -1.81 16 21 H 0.12 1.70 7.50 -51.93 -0.39 1.31 16 22 C -0.08 -0.80 3.87 -89.81 -0.35 -1.14 16 23 C -0.13 -1.20 7.65 -25.83 -0.20 -1.39 16 24 C -0.14 -1.21 8.09 -25.82 -0.21 -1.42 16 25 C -0.13 -1.31 7.49 -25.92 -0.19 -1.50 16 26 C -0.24 -6.25 8.62 -38.48 -0.33 -6.58 16 27 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 28 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 30 H 0.41 6.77 8.70 -40.82 -0.36 6.42 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.10 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.08 0.81 7.98 -51.93 -0.41 0.39 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.13 3.22 6.21 -52.49 -0.33 2.89 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -30.87 337.82 -10.46 -41.32 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -5.68 Total: 12.09 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -5.37 Total: -13.55 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 0.45 Total: -46.58 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.23 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.87 -10.46 -41.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593093859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.400 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds