Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30733 * 1 3 3 Si 1.86807 * 119.99855 * 2 1 4 4 H 1.48500 * 109.47001 * 270.00485 * 3 2 1 5 5 H 1.48495 * 109.47020 * 30.00298 * 3 2 1 6 6 H 1.48491 * 109.47075 * 150.00412 * 3 2 1 7 7 C 1.40029 * 120.00545 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00499 * 196.80190 * 7 2 1 9 9 C 1.41548 * 119.99572 * 16.80398 * 7 2 1 10 10 C 1.41176 * 120.99152 * 203.66170 * 9 7 2 11 11 C 1.37595 * 119.01429 * 180.02562 * 10 9 7 12 12 N 1.32085 * 121.10640 * 359.97438 * 11 10 9 13 13 C 1.32470 * 122.23096 * 0.02562 * 12 11 10 14 14 N 1.39481 * 119.57787 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99898 * 5.16194 * 14 13 12 16 16 O 1.21277 * 119.99913 * 355.13801 * 15 14 13 17 17 C 1.50696 * 120.00111 * 174.85969 * 15 14 13 18 18 H 1.09006 * 115.54907 * 34.55039 * 17 15 14 19 19 C 1.53000 * 117.49970 * 248.88751 * 17 15 14 20 20 C 1.52994 * 117.50248 * 180.26009 * 17 15 14 21 21 H 1.09004 * 117.50161 * 0.02562 * 20 17 15 22 22 C 1.52999 * 117.50392 * 214.98004 * 20 17 15 23 23 C 1.53774 * 113.61692 * 159.13648 * 22 20 17 24 24 C 1.53958 * 87.02204 * 220.04797 * 23 22 20 25 25 C 1.53781 * 113.61304 * 61.52538 * 22 20 17 26 26 C 1.38593 * 120.84103 * 0.27018 * 13 12 11 27 27 H 0.97006 * 120.00588 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.49532 * 0.04181 * 10 9 7 29 29 H 1.08001 * 119.44977 * 179.97438 * 11 10 9 30 30 H 0.96993 * 119.99912 * 185.16073 * 14 13 12 31 31 H 1.08993 * 117.50005 * 359.97438 * 19 17 15 32 32 H 1.08999 * 117.49544 * 144.99753 * 19 17 15 33 33 H 1.09000 * 112.85109 * 290.33560 * 22 20 17 34 34 H 1.08995 * 113.61555 * 334.56773 * 23 22 20 35 35 H 1.09005 * 113.61452 * 105.47180 * 23 22 20 36 36 H 1.09001 * 113.54044 * 270.81291 * 24 23 22 37 37 H 1.08997 * 113.66805 * 139.92710 * 24 23 22 38 38 H 1.09001 * 113.61998 * 254.53494 * 25 22 20 39 39 H 1.08997 * 113.61269 * 25.35616 * 25 22 20 40 40 H 1.08000 * 120.60004 * 179.72974 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4388 2.6527 0.7001 6 1 3.5389 1.4403 0.6999 7 6 2.0076 -1.2126 -0.0005 8 1 3.0530 -1.2327 0.2698 9 6 1.3452 -2.4121 -0.3555 10 6 1.8229 -3.6647 0.0871 11 6 1.1477 -4.8051 -0.2827 12 7 0.0670 -4.7431 -1.0396 13 6 -0.4216 -3.5935 -1.4807 14 7 -1.5663 -3.5925 -2.2776 15 6 -2.2277 -4.7439 -2.5085 16 8 -1.7798 -5.7933 -2.0976 17 6 -3.5270 -4.7265 -3.2718 18 1 -3.5965 -3.9816 -4.0646 19 6 -4.8052 -5.0564 -2.4983 20 6 -4.2326 -6.0654 -3.4959 21 1 -3.7574 -6.9589 -3.0909 22 6 -4.9820 -6.2568 -4.8160 23 6 -5.2159 -7.7316 -5.1834 24 6 -4.8935 -7.3373 -6.6363 25 6 -4.0770 -6.1703 -6.0563 26 6 0.1937 -2.3923 -1.1655 27 1 -0.4851 0.8400 0.0004 28 1 2.7052 -3.7269 0.7070 29 1 1.5072 -5.7671 0.0516 30 1 -1.8864 -2.7631 -2.6656 31 1 -4.7063 -5.2864 -1.4375 32 1 -5.7156 -4.5287 -2.7823 33 1 -5.8792 -5.6417 -4.8865 34 1 -4.4867 -8.4120 -4.7437 35 1 -6.2449 -8.0601 -5.0373 36 1 -5.7671 -7.0188 -7.2050 37 1 -4.2881 -8.0732 -7.1653 38 1 -4.1878 -5.2402 -6.6138 39 1 -3.0356 -6.4218 -5.8552 40 1 -0.2055 -1.4577 -1.5308 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593093859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = 20.868335 kcal Electronic energy + Delta-G solvation = -21562.572457 eV Core-core repulsion = 18342.663034 eV Total energy + Delta-G solvation = -3219.909423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.45715 -40.26307 -39.28499 -36.66641 -36.04775 -35.47714 -32.49150 -30.60809 -27.94651 -27.36457 -26.43620 -25.40682 -23.87227 -22.84521 -21.95840 -20.96433 -20.24415 -19.47232 -18.55632 -17.59298 -17.01609 -16.45522 -16.30952 -16.08921 -15.98536 -15.61254 -15.49594 -14.70612 -14.43008 -14.31517 -14.03966 -13.43581 -13.30464 -13.28593 -13.19434 -12.94742 -12.69125 -12.66436 -12.10147 -11.93258 -11.87838 -11.53861 -11.50740 -11.35612 -11.16863 -11.01405 -10.85575 -10.66418 -9.98012 -9.61773 -8.89291 -8.66533 -6.58586 0.70356 0.97685 1.40639 1.52916 1.53887 1.76228 2.08741 2.19325 2.74309 2.88029 3.49330 3.65722 3.71377 3.78272 3.89566 3.97535 4.08186 4.16529 4.25595 4.28695 4.53071 4.71576 4.81019 4.83389 4.88077 4.90883 4.92087 4.93536 5.03428 5.07225 5.13434 5.14078 5.20359 5.27924 5.40713 5.45898 5.62737 5.69276 5.88386 6.12385 6.45725 6.58907 6.77334 6.80838 7.30526 7.82017 8.24539 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.027028 B = 0.003301 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.713825 B = 8481.370046 C = 9014.653206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.040 3.960 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.484 4.484 8 H 0.084 0.916 9 C 0.114 3.886 10 C -0.300 4.300 11 C 0.112 3.888 12 N -0.582 5.582 13 C 0.332 3.668 14 N -0.649 5.649 15 C 0.521 3.479 16 O -0.531 6.531 17 C -0.187 4.187 18 H 0.150 0.850 19 C -0.135 4.135 20 C -0.105 4.105 21 H 0.088 0.912 22 C -0.075 4.075 23 C -0.136 4.136 24 C -0.137 4.137 25 C -0.140 4.140 26 C -0.261 4.261 27 H 0.293 0.707 28 H 0.116 0.884 29 H 0.149 0.851 30 H 0.423 0.577 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -3.143 -10.612 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.178 4.178 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.106 3.894 10 C -0.324 4.324 11 C -0.041 4.041 12 N -0.302 5.302 13 C 0.106 3.894 14 N -0.296 5.296 15 C 0.309 3.691 16 O -0.405 6.405 17 C -0.208 4.208 18 H 0.167 0.833 19 C -0.172 4.172 20 C -0.123 4.123 21 H 0.107 0.893 22 C -0.093 4.093 23 C -0.173 4.173 24 C -0.174 4.174 25 C -0.178 4.178 26 C -0.286 4.286 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.166 0.834 30 H 0.260 0.740 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.395 -4.572 -10.566 16.917 hybrid contribution 1.113 1.740 0.546 2.136 sum -11.282 -2.832 -10.020 15.352 Atomic orbital electron populations 1.69807 1.09094 1.31124 1.33492 1.26845 0.95574 1.04642 0.90720 0.85095 0.78993 0.75315 0.79683 1.18431 1.19047 1.18255 1.19879 0.98264 0.91652 1.41635 0.89754 1.18007 0.90646 0.93344 0.87416 1.22082 1.06055 0.93722 1.10510 1.22215 0.90551 0.97925 0.93432 1.67352 1.16352 1.27235 1.19271 1.18486 0.88146 0.90315 0.92411 1.43448 1.24982 1.11988 1.49170 1.20680 0.85813 0.82933 0.79658 1.90730 1.68090 1.31482 1.50152 1.22237 0.90046 1.04305 1.04206 0.83264 1.23184 0.95011 1.01740 0.97255 1.22382 1.00263 0.91746 0.97952 0.89349 1.22246 0.98434 0.98330 0.90303 1.22982 1.02175 0.95530 0.96658 1.22853 1.00471 0.97936 0.96179 1.22918 0.98240 0.99761 0.96867 1.21521 1.03183 0.95701 1.08242 0.89564 0.86577 0.83396 0.73981 0.90202 0.84311 0.86713 0.91357 0.90111 0.88540 0.91630 0.90441 0.92070 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.76 10.93 21.84 0.24 -39.52 16 2 C 0.04 1.90 5.20 85.29 0.44 2.34 16 3 Si 0.99 35.80 29.59 68.60 2.03 37.83 16 4 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 5 H -0.27 -9.10 7.11 99.48 0.71 -8.40 16 6 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 7 C -0.48 -25.26 9.12 23.52 0.21 -25.04 16 8 H 0.08 4.22 7.90 -2.91 -0.02 4.19 16 9 C 0.11 6.20 5.60 -21.11 -0.12 6.08 16 10 C -0.30 -15.28 9.90 22.84 0.23 -15.05 16 11 C 0.11 5.62 11.15 84.50 0.94 6.57 16 12 N -0.58 -31.17 7.85 -193.52 -1.52 -32.69 16 13 C 0.33 16.85 7.42 132.75 0.98 17.84 16 14 N -0.65 -26.51 5.39 -308.66 -1.66 -28.17 16 15 C 0.52 20.44 7.57 87.66 0.66 21.11 16 16 O -0.53 -25.78 14.51 -3.02 -0.04 -25.82 16 17 C -0.19 -4.91 5.74 -11.54 -0.07 -4.97 16 18 H 0.15 3.00 8.14 -2.38 -0.02 2.98 16 19 C -0.13 -2.97 9.92 30.60 0.30 -2.66 16 20 C -0.10 -2.49 5.04 -10.79 -0.05 -2.54 16 21 H 0.09 2.65 7.50 -2.38 -0.02 2.64 16 22 C -0.08 -1.28 3.87 -10.27 -0.04 -1.32 16 23 C -0.14 -2.21 7.65 31.18 0.24 -1.97 16 24 C -0.14 -1.99 8.09 31.18 0.25 -1.74 16 25 C -0.14 -2.47 7.49 31.12 0.23 -2.24 16 26 C -0.26 -13.73 8.62 22.98 0.20 -13.53 16 27 H 0.29 12.79 8.29 -92.70 -0.77 12.02 16 28 H 0.12 5.39 8.06 -2.91 -0.02 5.36 16 29 H 0.15 6.40 8.06 -2.91 -0.02 6.37 16 30 H 0.42 14.00 8.70 -92.71 -0.81 13.20 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.14 2.04 8.13 -2.39 -0.02 2.02 16 33 H 0.11 1.47 8.07 -2.39 -0.02 1.45 16 34 H 0.07 1.31 7.98 -2.39 -0.02 1.29 16 35 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 40 H 0.12 6.46 6.21 -2.91 -0.02 6.44 16 Total: -1.00 -68.92 337.82 3.71 -65.21 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: 0.25 Total: 40.29 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 4.42 Total: -17.13 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -2.94 Total: -100.38 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.04 Total: -25.82 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Total: -68.92 3.71 -65.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593093859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.075 kcal (2) G-P(sol) polarization free energy of solvation -68.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds