Wall clock time and date at job start Tue Mar 31 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 119.99869 * 2 1 4 4 H 1.48505 * 109.47296 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.47360 * 30.00284 * 3 2 1 6 6 H 1.48503 * 109.47029 * 150.00235 * 3 2 1 7 7 C 1.40032 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99569 * 179.97438 * 7 2 1 9 9 C 1.41327 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.40617 * 119.78807 * 180.02562 * 9 7 2 11 11 C 1.38306 * 119.12944 * 180.02562 * 10 9 7 12 12 C 1.38697 * 118.67157 * 359.97438 * 11 10 9 13 13 C 1.39634 * 119.49448 * 0.02562 * 12 11 10 14 14 N 1.39263 * 119.57495 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00399 * 185.41210 * 14 13 12 16 16 O 1.21273 * 119.99685 * 355.15000 * 15 14 13 17 17 C 1.50699 * 120.00403 * 174.87541 * 15 14 13 18 18 C 1.52303 * 115.91448 * 248.17145 * 17 15 14 19 19 C 1.51365 * 60.09952 * 253.80659 * 18 17 15 20 20 H 1.09006 * 115.84836 * 108.01657 * 19 18 17 21 21 C 1.52540 * 117.53188 * 248.65151 * 19 18 17 22 22 C 1.52880 * 110.48084 * 89.29258 * 21 19 18 23 23 C 1.53296 * 108.57875 * 306.54045 * 22 21 19 24 24 C 1.52075 * 114.63623 * 34.41513 * 17 15 14 25 25 N 1.31927 * 120.85080 * 0.25643 * 13 12 11 26 26 H 0.96998 * 120.00117 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.43594 * 0.02562 * 10 9 7 28 28 H 1.08003 * 120.65999 * 179.97438 * 11 10 9 29 29 H 1.08000 * 120.25222 * 180.02562 * 12 11 10 30 30 H 0.97008 * 119.99949 * 5.40923 * 14 13 12 31 31 H 1.08996 * 117.54259 * 0.84623 * 18 17 15 32 32 H 1.09002 * 117.53971 * 146.09893 * 18 17 15 33 33 H 1.09003 * 108.33242 * 329.52199 * 21 19 18 34 34 H 1.09006 * 109.93953 * 210.08002 * 21 19 18 35 35 H 1.08997 * 109.61705 * 186.81252 * 22 21 19 36 36 H 1.08998 * 109.76763 * 66.36354 * 22 21 19 37 37 H 1.09001 * 109.62221 * 314.70955 * 23 22 21 38 38 H 1.09009 * 109.61307 * 194.17214 * 23 22 21 39 39 H 1.09000 * 109.27057 * 285.89741 * 24 17 15 40 40 H 1.09002 * 109.26680 * 45.36460 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0085 -3.6518 -0.0005 11 6 1.3032 -4.8415 -0.0011 12 6 -0.0830 -4.7934 -0.0011 13 6 -0.7278 -3.5549 -0.0010 14 7 -2.1196 -3.5046 -0.0016 15 6 -2.7511 -2.3191 -0.1116 16 8 -2.1104 -1.2895 -0.1217 17 6 -4.2528 -2.2732 -0.2285 18 6 -4.8021 -1.8107 -1.5716 19 6 -4.8667 -0.8895 -0.3723 20 1 -4.1841 -0.0397 -0.3885 21 6 -6.2434 -0.5854 0.2099 22 6 -6.6135 -1.6176 1.2752 23 6 -6.4707 -3.0182 0.6686 24 6 -4.9830 -3.3516 0.5568 25 7 -0.0357 -2.4318 -0.0061 26 1 -0.4850 0.8400 0.0004 27 1 3.0885 -3.6561 -0.0001 28 1 1.8215 -5.7891 -0.0015 29 1 -0.6591 -5.7069 -0.0011 30 1 -2.6345 -4.3230 0.0773 31 1 -4.0826 -1.5612 -2.3515 32 1 -5.7341 -2.2588 -1.9163 33 1 -6.9735 -0.6229 -0.5986 34 1 -6.2475 0.4099 0.6544 35 1 -7.6437 -1.4604 1.5947 36 1 -5.9459 -1.5196 2.1312 37 1 -6.9253 -3.0362 -0.3220 38 1 -6.9618 -3.7477 1.3127 39 1 -4.8661 -4.3085 0.0481 40 1 -4.5540 -3.4214 1.5564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882469553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:47 Heat of formation + Delta-G solvation = 31.860347 kcal Electronic energy + Delta-G solvation = -22837.303135 eV Core-core repulsion = 19617.870362 eV Total energy + Delta-G solvation = -3219.432773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.37701 -38.51842 -36.93679 -34.15502 -33.09442 -32.87443 -30.93262 -30.26232 -28.92462 -25.64904 -24.83365 -23.74839 -21.75286 -21.18137 -21.05345 -19.64703 -18.17522 -17.67769 -16.70416 -16.04846 -14.81802 -14.65841 -14.43256 -14.30177 -14.03656 -13.86576 -13.67562 -13.55874 -13.23170 -12.84124 -12.30026 -12.16701 -11.94834 -11.77366 -11.65829 -11.14485 -10.96845 -10.93452 -10.85866 -10.63106 -10.44831 -10.38239 -9.91288 -9.87330 -9.66744 -9.45433 -8.98731 -8.83133 -7.94023 -7.17530 -6.92605 -6.11454 -4.37841 2.78514 3.07524 3.18374 3.20786 3.28440 3.53327 3.83902 4.07926 4.19834 4.65761 4.76622 4.83330 4.95744 5.04385 5.15639 5.30753 5.36662 5.50929 5.57661 5.64129 5.83746 5.86598 5.91981 6.06172 6.09137 6.12402 6.16487 6.23828 6.24928 6.30918 6.52047 6.53932 6.73692 6.86594 6.88235 7.26237 7.58449 7.66455 7.83686 8.10771 8.23415 8.51049 8.77423 9.07503 9.34328 10.27668 10.50520 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.005747 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.256063 B = 4870.532539 C = 6262.566769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.655 5.655 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.271 3.729 10 C -0.306 4.306 11 C -0.036 4.036 12 C -0.358 4.358 13 C 0.372 3.628 14 N -0.663 5.663 15 C 0.502 3.498 16 O -0.408 6.408 17 C -0.143 4.143 18 C -0.155 4.155 19 C -0.117 4.117 20 H 0.115 0.885 21 C -0.087 4.087 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.082 4.082 25 N -0.474 5.474 26 H 0.272 0.728 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.420 -3.169 0.172 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.274 5.274 2 C -0.171 4.171 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.146 3.854 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.383 4.383 13 C 0.133 3.867 14 N -0.309 5.309 15 C 0.284 3.716 16 O -0.271 6.271 17 C -0.146 4.146 18 C -0.192 4.192 19 C -0.136 4.136 20 H 0.133 0.867 21 C -0.124 4.124 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.119 4.119 25 N -0.193 5.193 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.600 -1.358 0.137 13.668 hybrid contribution 0.632 -0.733 -0.007 0.968 sum -12.969 -2.091 0.130 13.137 Atomic orbital electron populations 1.70328 1.05735 1.27336 1.23980 1.26181 0.95126 1.00562 0.95264 0.86527 0.80564 0.81923 0.79001 1.19678 1.20331 1.18758 1.19575 0.94042 0.89383 1.42638 0.89988 1.18400 0.87217 0.91956 0.87860 1.21624 0.98524 0.93552 1.19184 1.20556 0.93179 0.96504 0.95822 1.20497 0.94803 0.94967 1.28082 1.18644 0.83391 0.90915 0.93709 1.43365 1.04896 1.09221 1.73431 1.19790 0.87389 0.84855 0.79578 1.91130 1.64704 1.31012 1.40275 1.21154 0.93330 0.98193 1.01950 1.22773 1.02339 1.03232 0.90893 1.21798 0.98070 0.93437 1.00265 0.86715 1.21023 0.94363 0.99050 0.97966 1.21567 1.00933 0.94762 0.98504 1.21583 0.95922 0.97013 1.01038 1.20811 0.94791 0.96458 0.99854 1.68711 1.06973 1.23239 1.20344 0.91659 0.88605 0.88664 0.89151 0.76854 0.88568 0.88559 0.91870 0.91422 0.92088 0.91513 0.91821 0.91739 0.91396 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -18.38 9.00 55.55 0.50 -17.88 16 2 C 0.06 1.54 5.50 -17.34 -0.10 1.45 16 3 Si 0.90 19.51 29.56 -169.99 -5.02 14.49 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.43 -11.90 9.14 -37.74 -0.34 -12.24 16 8 H 0.08 2.14 7.85 -52.48 -0.41 1.73 16 9 C 0.27 7.75 6.55 -85.00 -0.56 7.19 16 10 C -0.31 -7.84 9.83 -38.66 -0.38 -8.22 16 11 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 12 C -0.36 -8.23 9.95 -38.89 -0.39 -8.61 16 13 C 0.37 9.30 7.43 -154.98 -1.15 8.15 16 14 N -0.66 -13.54 5.31 -11.41 -0.06 -13.60 16 15 C 0.50 10.44 7.23 -10.99 -0.08 10.36 16 16 O -0.41 -10.41 11.84 5.56 0.07 -10.34 16 17 C -0.14 -2.17 2.54 -156.96 -0.40 -2.57 16 18 C -0.16 -2.13 9.22 -27.91 -0.26 -2.39 16 19 C -0.12 -1.69 5.49 -92.16 -0.51 -2.20 16 20 H 0.11 1.97 7.50 -51.93 -0.39 1.58 16 21 C -0.09 -0.96 5.86 -27.03 -0.16 -1.12 16 22 C -0.12 -1.23 5.94 -26.64 -0.16 -1.39 16 23 C -0.12 -1.15 5.70 -26.64 -0.15 -1.31 16 24 C -0.08 -0.98 4.70 -27.27 -0.13 -1.10 16 25 N -0.47 -13.55 5.74 -10.26 -0.06 -13.61 16 26 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 27 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 28 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 29 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.40 6.45 7.64 -40.82 -0.31 6.14 16 31 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.10 1.08 7.28 -51.93 -0.38 0.70 16 33 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.76 8.05 -51.93 -0.42 0.35 16 37 H 0.06 0.59 7.12 -51.93 -0.37 0.22 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 322.47 15.07 4.86 4.86 Total: -1.00 -32.32 322.47 -10.49 -42.81 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.62 Total: 8.51 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -5.15 Total: -15.24 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.38 Total: -45.09 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.34 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.32 -10.49 -42.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882469553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.672 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds