Wall clock time and date at job start Tue Mar 31 2020 06:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 119.99869 * 2 1 4 4 H 1.48505 * 109.47296 * 270.00104 * 3 2 1 5 5 H 1.48501 * 109.47360 * 30.00284 * 3 2 1 6 6 H 1.48503 * 109.47029 * 150.00235 * 3 2 1 7 7 C 1.40032 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99569 * 179.97438 * 7 2 1 9 9 C 1.41327 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.40617 * 119.78807 * 180.02562 * 9 7 2 11 11 C 1.38306 * 119.12944 * 180.02562 * 10 9 7 12 12 C 1.38697 * 118.67157 * 359.97438 * 11 10 9 13 13 C 1.39634 * 119.49448 * 0.02562 * 12 11 10 14 14 N 1.39263 * 119.57495 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00399 * 185.41210 * 14 13 12 16 16 O 1.21273 * 119.99685 * 355.15000 * 15 14 13 17 17 C 1.50699 * 120.00403 * 174.87541 * 15 14 13 18 18 C 1.52303 * 115.91448 * 248.17145 * 17 15 14 19 19 C 1.51365 * 60.09952 * 253.80659 * 18 17 15 20 20 H 1.09006 * 115.84836 * 108.01657 * 19 18 17 21 21 C 1.52540 * 117.53188 * 248.65151 * 19 18 17 22 22 C 1.52880 * 110.48084 * 89.29258 * 21 19 18 23 23 C 1.53296 * 108.57875 * 306.54045 * 22 21 19 24 24 C 1.52075 * 114.63623 * 34.41513 * 17 15 14 25 25 N 1.31927 * 120.85080 * 0.25643 * 13 12 11 26 26 H 0.96998 * 120.00117 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.43594 * 0.02562 * 10 9 7 28 28 H 1.08003 * 120.65999 * 179.97438 * 11 10 9 29 29 H 1.08000 * 120.25222 * 180.02562 * 12 11 10 30 30 H 0.97008 * 119.99949 * 5.40923 * 14 13 12 31 31 H 1.08996 * 117.54259 * 0.84623 * 18 17 15 32 32 H 1.09002 * 117.53971 * 146.09893 * 18 17 15 33 33 H 1.09003 * 108.33242 * 329.52199 * 21 19 18 34 34 H 1.09006 * 109.93953 * 210.08002 * 21 19 18 35 35 H 1.08997 * 109.61705 * 186.81252 * 22 21 19 36 36 H 1.08998 * 109.76763 * 66.36354 * 22 21 19 37 37 H 1.09001 * 109.62221 * 314.70955 * 23 22 21 38 38 H 1.09009 * 109.61307 * 194.17214 * 23 22 21 39 39 H 1.09000 * 109.27057 * 285.89741 * 24 17 15 40 40 H 1.09002 * 109.26680 * 45.36460 * 24 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4001 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2127 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0085 -3.6518 -0.0005 11 6 1.3032 -4.8415 -0.0011 12 6 -0.0830 -4.7934 -0.0011 13 6 -0.7278 -3.5549 -0.0010 14 7 -2.1196 -3.5046 -0.0016 15 6 -2.7511 -2.3191 -0.1116 16 8 -2.1104 -1.2895 -0.1217 17 6 -4.2528 -2.2732 -0.2285 18 6 -4.8021 -1.8107 -1.5716 19 6 -4.8667 -0.8895 -0.3723 20 1 -4.1841 -0.0397 -0.3885 21 6 -6.2434 -0.5854 0.2099 22 6 -6.6135 -1.6176 1.2752 23 6 -6.4707 -3.0182 0.6686 24 6 -4.9830 -3.3516 0.5568 25 7 -0.0357 -2.4318 -0.0061 26 1 -0.4850 0.8400 0.0004 27 1 3.0885 -3.6561 -0.0001 28 1 1.8215 -5.7891 -0.0015 29 1 -0.6591 -5.7069 -0.0011 30 1 -2.6345 -4.3230 0.0773 31 1 -4.0826 -1.5612 -2.3515 32 1 -5.7341 -2.2588 -1.9163 33 1 -6.9735 -0.6229 -0.5986 34 1 -6.2475 0.4099 0.6544 35 1 -7.6437 -1.4604 1.5947 36 1 -5.9459 -1.5196 2.1312 37 1 -6.9253 -3.0362 -0.3220 38 1 -6.9618 -3.7477 1.3127 39 1 -4.8661 -4.3085 0.0481 40 1 -4.5540 -3.4214 1.5564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882469553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:47 Heat of formation + Delta-G solvation = 13.565824 kcal Electronic energy + Delta-G solvation = -22838.096446 eV Core-core repulsion = 19617.870362 eV Total energy + Delta-G solvation = -3220.226083 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.71486 -40.20860 -38.58270 -35.98166 -34.90623 -33.96291 -32.28312 -31.97322 -30.72350 -27.57265 -25.97194 -25.03595 -23.48465 -22.81942 -22.24544 -21.09925 -19.78442 -19.07583 -18.23406 -17.86728 -16.50128 -16.28917 -16.11465 -15.70985 -15.38221 -15.31777 -14.93141 -14.78653 -14.64272 -14.24968 -13.94499 -13.75957 -13.39713 -12.95323 -12.85909 -12.76548 -12.74971 -12.58461 -12.33612 -11.89286 -11.79995 -11.72921 -11.51758 -11.34896 -10.91718 -10.87133 -10.59210 -10.47661 -9.92172 -9.09588 -8.83598 -8.07131 -6.44695 0.88803 1.22913 1.36648 1.48559 1.51355 1.99086 2.23833 2.28987 2.86455 3.02258 3.57759 3.72230 3.82387 3.94146 4.04256 4.17578 4.30528 4.37271 4.38436 4.56695 4.62634 4.71543 4.75344 4.80899 4.87252 4.93871 5.01117 5.03992 5.05827 5.18316 5.24955 5.27569 5.30252 5.36466 5.43284 5.54365 5.66504 5.84890 5.90547 6.13108 6.35451 6.72700 6.83431 7.05857 7.69776 8.33061 8.54378 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.016770 B = 0.005747 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.256063 B = 4870.532539 C = 6262.566769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.692 5.692 2 C 0.010 3.990 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.467 4.467 8 H 0.086 0.914 9 C 0.236 3.764 10 C -0.329 4.329 11 C -0.034 4.034 12 C -0.347 4.347 13 C 0.347 3.653 14 N -0.651 5.651 15 C 0.489 3.511 16 O -0.463 6.463 17 C -0.143 4.143 18 C -0.138 4.138 19 C -0.123 4.123 20 H 0.073 0.927 21 C -0.081 4.081 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.079 4.079 25 N -0.509 5.509 26 H 0.269 0.731 27 H 0.105 0.895 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.418 0.582 31 H 0.070 0.930 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 -4.904 0.092 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.311 5.311 2 C -0.215 4.215 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.177 1.177 7 C -0.497 4.497 8 H 0.105 0.895 9 C 0.110 3.890 10 C -0.352 4.352 11 C -0.058 4.058 12 C -0.372 4.372 13 C 0.108 3.892 14 N -0.300 5.300 15 C 0.274 3.726 16 O -0.330 6.330 17 C -0.146 4.146 18 C -0.175 4.175 19 C -0.142 4.142 20 H 0.092 0.908 21 C -0.118 4.118 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.116 4.116 25 N -0.229 5.229 26 H 0.079 0.921 27 H 0.123 0.877 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.256 0.744 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.783 -3.155 0.060 16.095 hybrid contribution 1.288 -0.352 0.008 1.335 sum -14.495 -3.506 0.067 14.913 Atomic orbital electron populations 1.70545 1.07341 1.27872 1.25326 1.27070 0.96011 1.04105 0.94354 0.85320 0.79159 0.76724 0.79177 1.19039 1.19876 1.17749 1.19910 0.94466 0.90459 1.44909 0.89547 1.18912 0.87978 0.93474 0.88643 1.21817 0.99230 0.93820 1.20335 1.21041 0.93496 0.97367 0.93890 1.20986 0.95263 0.95684 1.25249 1.19208 0.85251 0.91165 0.93582 1.43368 1.03472 1.10418 1.72728 1.20850 0.89818 0.84063 0.77895 1.91121 1.66629 1.32767 1.42482 1.21109 0.89565 1.00041 1.03919 1.22825 1.02937 1.02255 0.89502 1.21824 0.99185 0.91860 1.01302 0.90834 1.21046 0.92357 0.99459 0.98985 1.21586 1.01884 0.94891 0.97389 1.21592 0.93941 0.96941 1.02394 1.20873 0.96145 0.95907 0.98692 1.68676 1.07371 1.25444 1.21398 0.92076 0.87679 0.84392 0.85045 0.74437 0.91124 0.84595 0.89489 0.91599 0.89558 0.93471 0.90225 0.89554 0.89397 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -41.28 9.00 21.84 0.20 -41.09 16 2 C 0.01 0.55 5.50 85.29 0.47 1.02 16 3 Si 0.98 41.93 29.56 68.60 2.03 43.96 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.47 -27.37 9.14 23.47 0.21 -27.16 16 8 H 0.09 4.73 7.85 -2.91 -0.02 4.71 16 9 C 0.24 14.06 6.55 40.20 0.26 14.32 16 10 C -0.33 -17.11 9.83 22.87 0.22 -16.89 16 11 C -0.03 -1.51 10.15 22.40 0.23 -1.28 16 12 C -0.35 -15.33 9.95 22.72 0.23 -15.10 16 13 C 0.35 17.53 7.43 133.24 0.99 18.52 16 14 N -0.65 -26.71 5.31 -308.40 -1.64 -28.35 16 15 C 0.49 21.06 7.23 87.66 0.63 21.69 16 16 O -0.46 -25.26 11.84 -3.01 -0.04 -25.29 16 17 C -0.14 -4.28 2.54 -53.77 -0.14 -4.42 16 18 C -0.14 -3.65 9.22 29.83 0.27 -3.37 16 19 C -0.12 -3.57 5.49 -11.79 -0.06 -3.64 16 20 H 0.07 2.75 7.50 -2.38 -0.02 2.73 16 21 C -0.08 -1.66 5.86 30.40 0.18 -1.48 16 22 C -0.12 -2.11 5.94 30.65 0.18 -1.93 16 23 C -0.11 -1.72 5.70 30.65 0.17 -1.55 16 24 C -0.08 -1.69 4.70 30.25 0.14 -1.54 16 25 N -0.51 -30.40 5.74 -186.37 -1.07 -31.47 16 26 H 0.27 15.16 8.29 -92.71 -0.77 14.40 16 27 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 28 H 0.14 4.92 8.06 -2.91 -0.02 4.89 16 29 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 30 H 0.42 12.94 7.64 -92.70 -0.71 12.23 16 31 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.14 2.51 7.28 -2.39 -0.02 2.50 16 33 H 0.09 1.39 8.06 -2.39 -0.02 1.37 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.34 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.01 8.05 -2.39 -0.02 1.00 16 37 H 0.08 1.03 7.12 -2.39 -0.02 1.01 16 38 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.09 1.52 7.82 -2.39 -0.02 1.51 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -76.49 322.47 3.83 -72.67 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.34 Total: 32.37 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 4.00 Total: -22.80 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -2.51 Total: -100.91 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.04 Total: -25.29 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -76.49 3.83 -72.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882469553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.235 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds