Wall clock time and date at job start Tue Mar 31 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39832 * 120.07418 * 108.08940 * 3 2 1 5 5 C 1.37630 * 119.92254 * 179.97438 * 4 3 2 6 6 C 1.39193 * 120.07583 * 359.97438 * 5 4 3 7 7 N 1.39195 * 119.92227 * 180.02562 * 6 5 4 8 8 C 1.46493 * 119.99869 * 359.72074 * 7 6 5 9 9 H 1.08998 * 110.02020 * 325.70562 * 8 7 6 10 10 C 1.54273 * 110.03052 * 87.09868 * 8 7 6 11 11 C 1.55009 * 104.13747 * 95.68620 * 10 8 7 12 12 C 1.54888 * 102.75862 * 37.95083 * 11 10 8 13 13 H 1.08991 * 110.59863 * 80.77932 * 12 11 10 14 14 C 1.50701 * 110.48473 * 203.37410 * 12 11 10 15 15 H 1.07996 * 120.00417 * 114.77942 * 14 12 11 16 16 C 1.37881 * 119.99751 * 294.76644 * 14 12 11 17 17 N 1.31520 * 120.00079 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 120.00064 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47087 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47396 * 120.00346 * 18 16 14 21 21 H 1.48508 * 109.47404 * 240.00335 * 18 16 14 22 22 C 1.53878 * 110.03398 * 204.31050 * 8 7 6 23 23 C 1.39151 * 120.15371 * 0.27631 * 6 5 4 24 24 C 1.50696 * 119.96674 * 179.72601 * 23 6 5 25 25 O 1.42895 * 109.47328 * 179.97438 * 24 23 6 26 26 C 1.37678 * 120.07393 * 359.44525 * 23 6 5 27 27 H 1.08007 * 120.03660 * 359.95366 * 4 3 2 28 28 H 1.08005 * 119.96087 * 180.02562 * 5 4 3 29 29 H 0.97000 * 119.99332 * 180.02562 * 7 6 5 30 30 H 1.09003 * 110.48049 * 214.35050 * 10 8 7 31 31 H 1.08999 * 110.48217 * 336.99071 * 10 8 7 32 32 H 1.09005 * 110.76100 * 279.62767 * 11 10 8 33 33 H 1.09005 * 110.74247 * 156.26680 * 11 10 8 34 34 H 0.96999 * 120.00140 * 179.97438 * 17 16 14 35 35 H 1.09000 * 110.02748 * 0.02562 * 22 8 7 36 36 H 1.08997 * 110.03041 * 121.43314 * 22 8 7 37 37 H 1.08998 * 109.47266 * 300.00019 * 24 23 6 38 38 H 1.09009 * 109.46839 * 59.99811 * 24 23 6 39 39 H 0.96707 * 113.99777 * 179.97438 * 25 24 23 40 40 H 1.07994 * 120.03834 * 180.27599 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.3767 -1.1503 5 6 4.6448 0.3767 -1.1466 6 6 5.3394 0.0034 0.0004 7 7 6.7313 0.0051 0.0007 8 6 7.4635 0.3935 -1.2072 9 1 6.9179 0.0713 -2.0941 10 6 7.6624 1.9231 -1.2357 11 6 9.0772 2.1321 -0.6378 12 6 9.8736 0.9370 -1.2177 13 1 10.1920 1.1476 -2.2386 14 6 11.0647 0.6256 -0.3486 15 1 11.1175 -0.3157 0.1782 16 6 12.0873 1.5423 -0.2262 17 7 12.0230 2.6888 -0.8675 18 14 13.5640 1.1561 0.8505 19 1 13.3957 -0.1886 1.4577 20 1 14.7977 1.1746 0.0240 21 1 13.6731 2.1750 1.9254 22 6 8.8688 -0.2333 -1.1961 23 6 4.6454 -0.3764 1.1452 24 6 5.4016 -0.7856 2.3828 25 8 4.4754 -1.1279 3.4157 26 6 3.2687 -0.3731 1.1504 27 1 2.7302 0.6665 -2.0406 28 1 5.1866 0.6674 -2.0346 29 1 7.2164 -0.2552 0.7994 30 1 7.6221 2.2939 -2.2599 31 1 6.9105 2.4170 -0.6202 32 1 9.0475 2.0848 0.4508 33 1 9.5019 3.0785 -0.9729 34 1 12.7422 3.3339 -0.7811 35 1 9.0058 -0.8268 -0.2922 36 1 9.0055 -0.8590 -2.0781 37 1 6.0292 -1.6476 2.1567 38 1 6.0277 0.0421 2.7163 39 1 4.8932 -1.4021 4.2436 40 1 2.7307 -0.6637 2.0405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894041125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:34 Heat of formation + Delta-G solvation = -9.851863 kcal Electronic energy + Delta-G solvation = -21765.956285 eV Core-core repulsion = 18544.714734 eV Total energy + Delta-G solvation = -3221.241550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.08342 -37.90875 -36.96988 -36.18600 -34.32950 -32.41016 -31.58756 -29.61953 -28.31040 -26.92333 -26.20695 -24.12242 -22.78935 -21.85625 -19.54473 -19.32386 -18.42612 -17.72558 -17.10506 -16.52520 -15.53006 -15.23806 -14.96327 -14.58404 -14.53208 -14.13786 -13.87982 -13.80641 -13.51633 -13.03749 -12.86809 -12.55686 -12.46739 -12.37947 -11.79536 -11.58943 -11.24021 -11.12057 -11.03044 -10.90315 -10.60708 -10.47468 -10.40373 -10.18239 -9.78188 -9.62386 -9.34500 -8.92064 -8.88145 -8.46652 -7.34862 -6.11184 -4.14571 1.03221 1.35805 2.77348 3.03293 3.21728 3.30926 3.32842 3.48652 3.93981 4.00019 4.07710 4.34894 4.72204 4.91296 5.14849 5.19861 5.22124 5.28476 5.32472 5.42395 5.45050 5.57363 5.68046 5.95959 6.08384 6.15566 6.18673 6.35185 6.38115 6.40004 6.52757 6.58613 6.70460 6.81096 7.02538 7.17944 7.42134 7.43046 7.58682 7.61520 7.74376 7.76319 7.91005 8.31707 8.88170 9.50242 10.98149 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.003554 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.312212 B = 7876.165729 C = 8631.217050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.272 3.728 3 C -0.119 4.119 4 C -0.016 4.016 5 C -0.205 4.205 6 C 0.267 3.733 7 N -0.715 5.715 8 C 0.139 3.861 9 H 0.073 0.927 10 C -0.144 4.144 11 C -0.098 4.098 12 C 0.048 3.952 13 H 0.033 0.967 14 C -0.516 4.516 15 H 0.055 0.945 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.123 4.123 23 C -0.185 4.185 24 C 0.126 3.874 25 O -0.569 6.569 26 C 0.006 3.994 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.402 0.598 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.383 0.617 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.021 -5.242 2.773 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.042 4.042 3 C -0.125 4.125 4 C -0.037 4.037 5 C -0.228 4.228 6 C 0.156 3.844 7 N -0.339 5.339 8 C 0.034 3.966 9 H 0.091 0.909 10 C -0.182 4.182 11 C -0.137 4.137 12 C 0.029 3.971 13 H 0.051 0.949 14 C -0.554 4.554 15 H 0.073 0.927 16 C -0.139 4.139 17 N -0.526 5.526 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.161 4.161 23 C -0.190 4.190 24 C 0.049 3.951 25 O -0.375 6.375 26 C -0.015 4.015 27 H 0.145 0.855 28 H 0.153 0.847 29 H 0.238 0.762 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.230 0.770 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.944 -4.868 2.082 13.985 hybrid contribution 2.016 -0.282 1.288 2.409 sum -10.929 -5.150 3.370 12.542 Atomic orbital electron populations 1.81206 1.12292 1.11087 1.08236 1.25759 0.92654 0.92622 0.93138 1.15726 0.84046 1.15718 0.96998 1.20853 0.93462 0.93386 0.96014 1.20566 0.93579 1.10378 0.98266 1.17857 0.84294 0.89685 0.92540 1.45336 1.01986 1.70555 1.15998 1.21915 0.93274 0.95566 0.85807 0.90924 1.22987 1.00181 0.94291 1.00782 1.22459 0.90969 1.01560 0.98680 1.19469 0.91638 0.88959 0.97010 0.94870 1.21182 1.03441 1.02445 1.28320 0.92719 1.24981 0.98101 0.95148 0.95671 1.69957 1.32930 1.07509 1.42155 0.86605 0.82987 0.78317 0.80475 1.19849 1.21040 1.21074 1.22600 0.92574 1.00047 1.00846 1.18946 0.93676 1.11895 0.94514 1.20650 0.90130 0.98531 0.85831 1.86401 1.36328 1.89795 1.24981 1.20622 0.92780 0.92033 0.96046 0.85455 0.84665 0.76217 0.91932 0.92672 0.93492 0.91446 0.93053 0.92028 0.92679 0.92602 0.92436 0.76973 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.76 18.54 41.84 0.78 -5.98 16 2 C 0.27 3.54 15.33 -22.47 -0.34 3.20 16 3 C -0.12 -1.37 5.74 -106.80 -0.61 -1.99 16 4 C -0.02 -0.17 9.75 -39.21 -0.38 -0.55 16 5 C -0.21 -2.29 9.18 -39.45 -0.36 -2.66 16 6 C 0.27 3.18 6.63 -83.82 -0.56 2.63 16 7 N -0.72 -9.01 5.13 -51.07 -0.26 -9.27 16 8 C 0.14 1.98 2.89 -66.81 -0.19 1.79 16 9 H 0.07 0.93 6.47 -51.93 -0.34 0.60 16 10 C -0.14 -2.29 6.55 -25.00 -0.16 -2.46 16 11 C -0.10 -2.03 5.75 -24.67 -0.14 -2.17 16 12 C 0.05 1.05 2.72 -90.11 -0.25 0.81 16 13 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 14 C -0.52 -12.94 8.46 -34.44 -0.29 -13.23 16 15 H 0.05 1.36 7.54 -52.49 -0.40 0.96 16 16 C 0.06 1.64 5.35 -17.82 -0.10 1.54 16 17 N -0.89 -24.09 12.29 55.43 0.68 -23.41 16 18 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.12 -2.11 6.13 -25.61 -0.16 -2.27 16 23 C -0.19 -2.12 5.89 -104.49 -0.62 -2.74 16 24 C 0.13 1.22 6.17 36.00 0.22 1.45 16 25 O -0.57 -5.25 12.13 -35.23 -0.43 -5.68 16 26 C 0.01 0.07 9.08 -39.21 -0.36 -0.28 16 27 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 28 H 0.14 1.42 6.22 -52.48 -0.33 1.09 16 29 H 0.40 4.89 6.96 -40.82 -0.28 4.61 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.85 8.04 -51.93 -0.42 0.43 16 32 H 0.05 1.00 8.05 -51.93 -0.42 0.58 16 33 H 0.07 1.56 7.55 -51.93 -0.39 1.17 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.06 1.06 7.12 -51.93 -0.37 0.69 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.49 8.05 -51.93 -0.42 0.08 16 38 H 0.06 0.54 8.05 -51.92 -0.42 0.12 16 39 H 0.38 1.82 9.12 45.56 0.42 2.23 16 40 H 0.14 1.55 6.99 -52.49 -0.37 1.19 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -28.65 335.52 -8.05 -36.70 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.55 Total: 4.42 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -4.30 Total: -16.92 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 1.19 Total: -38.67 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.43 Total: -5.68 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.65 -8.05 -36.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894041125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.844 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds