Wall clock time and date at job start Tue Mar 31 2020 05:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39832 * 120.07418 * 108.08940 * 3 2 1 5 5 C 1.37630 * 119.92254 * 179.97438 * 4 3 2 6 6 C 1.39193 * 120.07583 * 359.97438 * 5 4 3 7 7 N 1.39195 * 119.92227 * 180.02562 * 6 5 4 8 8 C 1.46493 * 119.99869 * 359.72074 * 7 6 5 9 9 H 1.08998 * 110.02020 * 325.70562 * 8 7 6 10 10 C 1.54273 * 110.03052 * 87.09868 * 8 7 6 11 11 C 1.55009 * 104.13747 * 95.68620 * 10 8 7 12 12 C 1.54888 * 102.75862 * 37.95083 * 11 10 8 13 13 H 1.08991 * 110.59863 * 80.77932 * 12 11 10 14 14 C 1.50701 * 110.48473 * 203.37410 * 12 11 10 15 15 H 1.07996 * 120.00417 * 114.77942 * 14 12 11 16 16 C 1.37881 * 119.99751 * 294.76644 * 14 12 11 17 17 N 1.31520 * 120.00079 * 0.02562 * 16 14 12 18 18 Si 1.86792 * 120.00064 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47087 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47396 * 120.00346 * 18 16 14 21 21 H 1.48508 * 109.47404 * 240.00335 * 18 16 14 22 22 C 1.53878 * 110.03398 * 204.31050 * 8 7 6 23 23 C 1.39151 * 120.15371 * 0.27631 * 6 5 4 24 24 C 1.50696 * 119.96674 * 179.72601 * 23 6 5 25 25 O 1.42895 * 109.47328 * 179.97438 * 24 23 6 26 26 C 1.37678 * 120.07393 * 359.44525 * 23 6 5 27 27 H 1.08007 * 120.03660 * 359.95366 * 4 3 2 28 28 H 1.08005 * 119.96087 * 180.02562 * 5 4 3 29 29 H 0.97000 * 119.99332 * 180.02562 * 7 6 5 30 30 H 1.09003 * 110.48049 * 214.35050 * 10 8 7 31 31 H 1.08999 * 110.48217 * 336.99071 * 10 8 7 32 32 H 1.09005 * 110.76100 * 279.62767 * 11 10 8 33 33 H 1.09005 * 110.74247 * 156.26680 * 11 10 8 34 34 H 0.96999 * 120.00140 * 179.97438 * 17 16 14 35 35 H 1.09000 * 110.02748 * 0.02562 * 22 8 7 36 36 H 1.08997 * 110.03041 * 121.43314 * 22 8 7 37 37 H 1.08998 * 109.47266 * 300.00019 * 24 23 6 38 38 H 1.09009 * 109.46839 * 59.99811 * 24 23 6 39 39 H 0.96707 * 113.99777 * 179.97438 * 25 24 23 40 40 H 1.07994 * 120.03834 * 180.27599 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.3767 -1.1503 5 6 4.6448 0.3767 -1.1466 6 6 5.3394 0.0034 0.0004 7 7 6.7313 0.0051 0.0007 8 6 7.4635 0.3935 -1.2072 9 1 6.9179 0.0713 -2.0941 10 6 7.6624 1.9231 -1.2357 11 6 9.0772 2.1321 -0.6378 12 6 9.8736 0.9370 -1.2177 13 1 10.1920 1.1476 -2.2386 14 6 11.0647 0.6256 -0.3486 15 1 11.1175 -0.3157 0.1782 16 6 12.0873 1.5423 -0.2262 17 7 12.0230 2.6888 -0.8675 18 14 13.5640 1.1561 0.8505 19 1 13.3957 -0.1886 1.4577 20 1 14.7977 1.1746 0.0240 21 1 13.6731 2.1750 1.9254 22 6 8.8688 -0.2333 -1.1961 23 6 4.6454 -0.3764 1.1452 24 6 5.4016 -0.7856 2.3828 25 8 4.4754 -1.1279 3.4157 26 6 3.2687 -0.3731 1.1504 27 1 2.7302 0.6665 -2.0406 28 1 5.1866 0.6674 -2.0346 29 1 7.2164 -0.2552 0.7994 30 1 7.6221 2.2939 -2.2599 31 1 6.9105 2.4170 -0.6202 32 1 9.0475 2.0848 0.4508 33 1 9.5019 3.0785 -0.9729 34 1 12.7422 3.3339 -0.7811 35 1 9.0058 -0.8268 -0.2922 36 1 9.0055 -0.8590 -2.0781 37 1 6.0292 -1.6476 2.1567 38 1 6.0277 0.0421 2.7163 39 1 4.8932 -1.4021 4.2436 40 1 2.7307 -0.6637 2.0405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894041125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:33 Heat of formation + Delta-G solvation = -26.902313 kcal Electronic energy + Delta-G solvation = -21766.695648 eV Core-core repulsion = 18544.714734 eV Total energy + Delta-G solvation = -3221.980913 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01146 -39.16747 -37.80639 -37.18108 -35.60924 -34.06703 -32.50038 -30.71399 -29.85166 -28.28187 -27.00209 -25.83095 -23.79425 -22.78524 -21.09011 -20.61182 -19.30393 -18.63223 -18.48893 -17.80853 -16.63660 -16.58417 -16.13146 -15.86591 -15.47297 -15.25915 -14.83288 -14.81255 -14.63203 -14.39715 -14.13168 -13.68662 -13.59593 -13.43625 -13.31441 -12.95075 -12.73718 -12.44956 -12.39070 -12.32407 -11.97045 -11.77788 -11.55646 -11.35667 -11.17967 -11.00636 -10.81807 -10.73728 -10.40874 -9.71443 -8.30347 -8.08819 -6.17269 0.11558 0.51100 1.40801 1.44601 1.53517 1.75619 2.06814 2.43834 2.50216 3.03368 3.11369 3.23034 3.34534 3.89428 4.01620 4.08155 4.10434 4.31717 4.42870 4.44237 4.54767 4.61910 4.78705 4.80376 4.87514 4.99162 5.10958 5.17455 5.19570 5.26560 5.29620 5.35103 5.46725 5.52672 5.56026 5.70160 5.84204 5.97770 6.05443 6.39720 6.43214 6.61151 6.78509 6.95380 6.95959 7.50315 8.99578 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.003554 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.312212 B = 7876.165729 C = 8631.217050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.291 3.709 3 C -0.123 4.123 4 C -0.009 4.009 5 C -0.207 4.207 6 C 0.261 3.739 7 N -0.716 5.716 8 C 0.154 3.846 9 H 0.100 0.900 10 C -0.131 4.131 11 C -0.092 4.092 12 C 0.037 3.963 13 H 0.001 0.999 14 C -0.525 4.525 15 H 0.055 0.945 16 C 0.011 3.989 17 N -0.919 5.919 18 Si 0.946 3.054 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.285 1.285 22 C -0.114 4.114 23 C -0.188 4.188 24 C 0.126 3.874 25 O -0.583 6.583 26 C 0.002 3.998 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.404 0.596 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.032 0.968 33 H 0.031 0.969 34 H 0.257 0.743 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.401 0.599 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.782 -6.293 2.965 13.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.022 4.022 3 C -0.129 4.129 4 C -0.030 4.030 5 C -0.229 4.229 6 C 0.151 3.849 7 N -0.340 5.340 8 C 0.049 3.951 9 H 0.117 0.883 10 C -0.169 4.169 11 C -0.130 4.130 12 C 0.019 3.981 13 H 0.020 0.980 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.187 4.187 17 N -0.559 5.559 18 Si 0.773 3.227 19 H -0.188 1.188 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.152 4.152 23 C -0.193 4.193 24 C 0.049 3.951 25 O -0.392 6.392 26 C -0.019 4.019 27 H 0.167 0.833 28 H 0.165 0.835 29 H 0.240 0.760 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.252 0.748 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.721 -5.943 2.301 15.129 hybrid contribution 2.263 0.037 1.252 2.587 sum -11.458 -5.906 3.553 13.371 Atomic orbital electron populations 1.81225 1.13409 1.12567 1.09508 1.25935 0.92763 0.91523 0.92001 1.15804 0.83217 1.16251 0.97620 1.21051 0.93352 0.92315 0.96272 1.20742 0.93815 1.10003 0.98375 1.17953 0.83827 0.90040 0.93051 1.45152 1.02253 1.71100 1.15517 1.21637 0.92124 0.93729 0.87581 0.88265 1.22878 0.97015 0.96049 1.01007 1.22224 0.93840 0.99199 0.97769 1.19457 0.92329 0.91753 0.94596 0.98048 1.21619 1.04476 1.02109 1.28077 0.92684 1.25715 1.00776 0.95201 0.97049 1.70086 1.33641 1.08395 1.43769 0.85688 0.79866 0.78358 0.78817 1.18848 1.21211 1.21114 1.22420 0.93002 0.98279 1.01456 1.19134 0.93656 1.11379 0.95141 1.20646 0.89981 0.99024 0.85469 1.86357 1.36936 1.89905 1.25978 1.20650 0.92968 0.92236 0.96072 0.83297 0.83536 0.76002 0.91034 0.91601 0.94879 0.94991 0.93353 0.91903 0.91659 0.91598 0.92190 0.74831 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.21 18.54 19.00 0.35 -13.86 16 2 C 0.29 7.14 15.33 88.33 1.35 8.49 16 3 C -0.12 -2.57 5.74 -21.27 -0.12 -2.70 16 4 C -0.01 -0.16 9.75 22.51 0.22 0.06 16 5 C -0.21 -3.92 9.18 22.36 0.21 -3.71 16 6 C 0.26 5.46 6.63 38.42 0.25 5.71 16 7 N -0.72 -16.06 5.13 -315.50 -1.62 -17.68 16 8 C 0.15 3.98 2.89 45.72 0.13 4.11 16 9 H 0.10 2.13 6.47 -2.39 -0.02 2.12 16 10 C -0.13 -3.94 6.55 31.71 0.21 -3.73 16 11 C -0.09 -3.82 5.75 31.93 0.18 -3.63 16 12 C 0.04 1.65 2.72 -10.47 -0.03 1.62 16 13 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 14 C -0.52 -26.48 8.46 25.60 0.22 -26.26 16 15 H 0.05 2.70 7.54 -2.91 -0.02 2.68 16 16 C 0.01 0.59 5.35 84.65 0.45 1.04 16 17 N -0.92 -51.24 12.29 21.45 0.26 -50.98 16 18 Si 0.95 41.54 29.54 68.60 2.03 43.57 16 19 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 20 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 C -0.11 -3.72 6.13 31.32 0.19 -3.53 16 23 C -0.19 -3.87 5.89 -19.78 -0.12 -3.99 16 24 C 0.13 2.18 6.17 71.23 0.44 2.62 16 25 O -0.58 -9.63 12.13 -148.98 -1.81 -11.44 16 26 C 0.00 0.04 9.08 22.51 0.20 0.25 16 27 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.15 2.46 6.22 -2.91 -0.02 2.44 16 29 H 0.40 8.86 6.96 -92.71 -0.64 8.21 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.86 8.04 -2.39 -0.02 1.84 16 32 H 0.03 1.42 8.05 -2.38 -0.02 1.40 16 33 H 0.03 1.52 7.55 -2.38 -0.02 1.50 16 34 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 35 H 0.06 2.04 7.12 -2.39 -0.02 2.03 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.00 8.05 -2.39 -0.02 0.99 16 38 H 0.06 1.01 8.05 -2.38 -0.02 0.99 16 39 H 0.40 3.01 9.12 -74.05 -0.68 2.34 16 40 H 0.13 2.88 6.99 -2.91 -0.02 2.86 16 Total: -1.00 -62.29 335.52 2.77 -59.51 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -0.24 Total: 14.51 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 3.79 Total: -23.64 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -1.00 Total: -82.52 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -1.81 Total: -11.44 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -62.29 2.77 -59.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894041125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.611 kcal (2) G-P(sol) polarization free energy of solvation -62.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds