Wall clock time and date at job start Tue Mar 31 2020 07:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37975 * 120.07557 * 2 1 4 4 C 1.38334 * 120.14739 * 180.02562 * 3 2 1 5 5 C 1.38384 * 120.29313 * 359.97438 * 4 3 2 6 6 C 1.37939 * 120.14582 * 359.74301 * 5 4 3 7 7 C 1.39562 * 120.07449 * 180.02562 * 2 1 3 8 8 C 1.47845 * 120.14295 * 359.95837 * 7 2 1 9 9 O 1.21559 * 120.00045 * 354.04287 * 8 7 2 10 10 N 1.34772 * 120.00051 * 174.05116 * 8 7 2 11 11 C 1.46503 * 119.99994 * 179.97438 * 10 8 7 12 12 H 1.09000 * 115.51547 * 9.58032 * 11 10 8 13 13 C 1.53004 * 117.40704 * 224.22502 * 11 10 8 14 14 H 1.09001 * 119.53382 * 4.09940 * 13 11 10 15 15 C 1.54387 * 118.12449 * 160.79565 * 13 11 10 16 16 N 1.48148 * 104.61886 * 87.18627 * 15 13 11 17 17 C 1.36933 * 127.83525 * 140.41318 * 16 15 13 18 18 H 1.08006 * 119.99915 * 346.71721 * 17 16 15 19 19 C 1.38810 * 120.00109 * 166.71234 * 17 16 15 20 20 N 1.31621 * 119.99892 * 350.39791 * 19 17 16 21 21 Si 1.86800 * 120.00136 * 170.40221 * 19 17 16 22 22 H 1.48498 * 109.47301 * 94.84311 * 21 19 17 23 23 H 1.48503 * 109.46672 * 214.84061 * 21 19 17 24 24 H 1.48501 * 109.47124 * 334.83757 * 21 19 17 25 25 C 1.51827 * 104.54992 * 320.14236 * 16 15 13 26 26 C 1.53004 * 117.44082 * 154.99581 * 11 10 8 27 27 H 1.08998 * 119.54143 * 355.84484 * 26 11 10 28 28 H 1.09004 * 109.46976 * 263.21821 * 1 2 3 29 29 H 1.09000 * 109.46990 * 23.22099 * 1 2 3 30 30 H 1.08999 * 109.47338 * 143.21946 * 1 2 3 31 31 H 1.07997 * 119.92766 * 0.02647 * 3 2 1 32 32 H 1.07999 * 119.85988 * 180.02562 * 4 3 2 33 33 H 1.08001 * 119.92807 * 180.02562 * 5 4 3 34 34 H 1.07993 * 120.07899 * 180.27807 * 6 5 4 35 35 H 0.97001 * 120.00248 * 359.97438 * 10 8 7 36 36 H 1.09000 * 110.40470 * 205.97718 * 15 13 11 37 37 H 1.09003 * 110.40397 * 328.40529 * 15 13 11 38 38 H 0.96994 * 120.00050 * 179.97438 * 20 19 17 39 39 H 1.08998 * 110.21818 * 281.99544 * 25 16 15 40 40 H 1.09004 * 112.25820 * 158.40825 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1940 0.0000 4 6 3.5818 1.1957 -0.0005 5 6 4.2813 0.0017 -0.0005 6 6 3.6023 -1.1990 0.0053 7 6 2.2063 -1.2077 -0.0005 8 6 1.4720 -2.4909 -0.0002 9 8 0.2614 -2.4984 0.1098 10 7 2.1447 -3.6524 -0.1217 11 6 1.4171 -4.9239 -0.1208 12 1 0.3317 -4.8438 -0.1820 13 6 1.9936 -6.0647 0.7202 14 1 2.8737 -5.8853 1.3377 15 6 1.0568 -7.2295 1.1065 16 7 1.1474 -8.1750 -0.0304 17 6 1.1889 -9.5429 0.0160 18 1 1.3707 -10.0461 0.9543 19 6 0.9972 -10.2828 -1.1426 20 7 0.5903 -9.6876 -2.2438 21 14 1.3166 -12.1233 -1.1391 22 1 0.0442 -12.8461 -0.8862 23 1 1.8651 -12.5330 -2.4569 24 1 2.2944 -12.4540 -0.0715 25 6 1.1771 -7.2883 -1.2625 26 6 2.0769 -6.1144 -0.8197 27 1 3.0190 -5.9721 -1.3490 28 1 -0.3633 -0.1214 1.0205 29 1 -0.3633 0.9444 -0.4052 30 1 -0.3634 -0.8231 -0.6153 31 1 1.6585 2.1293 0.0004 32 1 4.1183 2.1330 -0.0001 33 1 5.3613 0.0100 -0.0005 34 1 4.1493 -2.1301 0.0099 35 1 3.1107 -3.6465 -0.2097 36 1 1.4007 -7.7052 2.0250 37 1 0.0337 -6.8718 1.2228 38 1 0.4567 -10.2046 -3.0536 39 1 0.1736 -6.9316 -1.4942 40 1 1.6103 -7.7946 -2.1252 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958128213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:58 Heat of formation + Delta-G solvation = 55.281279 kcal Electronic energy + Delta-G solvation = -21624.930050 eV Core-core repulsion = 18406.512885 eV Total energy + Delta-G solvation = -3218.417165 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48157 -38.94785 -37.84107 -34.57731 -33.01869 -32.56125 -31.32544 -29.98121 -27.23077 -27.11652 -25.65625 -23.98852 -22.31362 -21.30831 -20.57679 -20.15881 -19.21455 -17.76418 -16.86304 -16.40060 -15.93728 -15.31901 -15.16834 -14.87616 -14.64133 -13.95517 -13.55544 -13.45501 -13.33804 -13.17695 -12.72891 -12.29857 -12.22573 -12.12256 -11.91064 -11.51757 -11.43266 -11.32661 -10.99562 -10.82678 -10.43024 -10.18555 -10.15184 -9.70391 -9.59727 -9.25620 -9.20067 -8.96909 -8.74162 -8.32006 -6.88068 -5.77707 -3.10305 0.65592 1.08841 2.78181 3.09129 3.39227 3.44664 3.46716 3.63054 4.32362 4.46941 4.50580 4.55113 4.61325 4.76856 5.05255 5.12821 5.19185 5.34114 5.37962 5.42826 5.55412 5.59860 5.66625 5.74182 5.79524 5.88985 6.01008 6.09616 6.12381 6.16265 6.20063 6.43290 6.52811 6.65089 6.68691 6.80028 6.89052 7.31353 7.51540 7.56207 7.70324 8.13836 8.25400 9.07368 9.74002 10.50066 11.37071 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.040689 B = 0.002967 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.974424 B = 9433.338944 C = 9679.014508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.022 4.022 3 C -0.133 4.133 4 C -0.093 4.093 5 C -0.136 4.136 6 C -0.082 4.082 7 C -0.136 4.136 8 C 0.558 3.442 9 O -0.529 6.529 10 N -0.693 5.693 11 C 0.096 3.904 12 H 0.133 0.867 13 C -0.183 4.183 14 H 0.103 0.897 15 C 0.160 3.840 16 N -0.599 5.599 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.186 3.814 26 C -0.178 4.178 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.397 0.603 36 H 0.052 0.948 37 H 0.027 0.973 38 H 0.254 0.746 39 H 0.029 0.971 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 21.476 3.703 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.023 4.023 3 C -0.151 4.151 4 C -0.111 4.111 5 C -0.154 4.154 6 C -0.101 4.101 7 C -0.139 4.139 8 C 0.346 3.654 9 O -0.407 6.407 10 N -0.341 5.341 11 C -0.010 4.010 12 H 0.151 0.849 13 C -0.204 4.204 14 H 0.121 0.879 15 C 0.033 3.967 16 N -0.324 5.324 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.564 5.564 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.062 3.938 26 C -0.199 4.199 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.232 0.768 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.237 21.199 3.644 22.396 hybrid contribution 0.974 -0.883 -0.063 1.316 sum 7.210 20.316 3.581 21.853 Atomic orbital electron populations 1.21111 0.89894 1.03065 1.03854 1.20099 0.97037 0.91439 0.93722 1.21076 0.94275 0.97515 1.02261 1.21340 0.94286 0.98272 0.97223 1.21074 1.00174 0.92186 1.02016 1.21327 0.92979 0.98671 0.97122 1.19858 0.93611 0.93317 1.07163 1.18217 0.87198 0.83438 0.76537 1.90729 1.13603 1.86994 1.49380 1.45331 1.10307 1.05159 1.73344 1.21899 0.96838 0.78162 1.04122 0.84932 1.24398 1.02798 0.98245 0.94966 0.87936 1.21047 0.95012 0.88599 0.92062 1.46072 1.85548 1.01057 0.99739 1.19028 1.41609 0.79451 0.95099 0.90510 1.24838 1.01030 0.98117 0.96490 1.69878 1.50781 1.34601 1.01162 0.86105 0.77862 0.84859 0.76946 1.21563 1.21608 1.20600 1.21748 0.94722 0.85796 0.91584 1.24613 1.02434 0.97283 0.95576 0.88055 0.90564 0.92504 0.88395 0.85417 0.85668 0.85479 0.85612 0.76789 0.92979 0.95564 0.93603 0.95263 0.88582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.73 36.00 0.31 -1.08 16 2 C -0.02 -0.25 5.91 -104.23 -0.62 -0.87 16 3 C -0.13 -1.19 9.66 -39.64 -0.38 -1.57 16 4 C -0.09 -0.72 10.04 -39.49 -0.40 -1.12 16 5 C -0.14 -1.10 10.03 -39.64 -0.40 -1.50 16 6 C -0.08 -0.79 9.53 -39.18 -0.37 -1.16 16 7 C -0.14 -1.65 5.87 -104.97 -0.62 -2.27 16 8 C 0.56 8.22 7.70 -12.33 -0.10 8.13 16 9 O -0.53 -9.34 12.91 5.31 0.07 -9.27 16 10 N -0.69 -9.62 5.51 -54.74 -0.30 -9.92 16 11 C 0.10 1.62 5.97 -67.93 -0.41 1.22 16 12 H 0.13 2.54 7.40 -51.93 -0.38 2.15 16 13 C -0.18 -3.27 7.06 -89.21 -0.63 -3.90 16 14 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 15 C 0.16 3.39 7.05 -2.41 -0.02 3.38 16 16 N -0.60 -15.42 3.45 -165.70 -0.57 -15.99 16 17 C -0.22 -6.25 10.37 -15.06 -0.16 -6.40 16 18 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 19 C -0.01 -0.23 5.43 -17.43 -0.09 -0.32 16 20 N -0.92 -26.86 10.76 55.49 0.60 -26.26 16 21 Si 0.91 21.96 29.56 -169.99 -5.03 16.94 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.19 4.46 5.93 -0.29 0.00 4.46 16 26 C -0.18 -3.34 6.96 -89.21 -0.62 -3.96 16 27 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.50 8.04 -51.93 -0.42 0.09 16 30 H 0.10 1.34 5.86 -51.93 -0.30 1.03 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.13 0.96 6.45 -52.49 -0.34 0.62 16 35 H 0.40 4.39 6.90 -40.82 -0.28 4.11 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 2.54 6.52 -51.93 -0.34 2.20 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -31.92 330.12 -10.17 -42.09 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.42 Total: 4.40 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -4.49 Total: -6.96 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.28 Total: -52.17 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.92 -10.17 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958128213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.368 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds