Wall clock time and date at job start Tue Mar 31 2020 06:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34244 * 125.03385 * 2 1 4 4 C 1.46496 * 107.02313 * 179.97438 * 3 2 1 5 5 C 1.39670 * 133.94166 * 180.02562 * 4 3 2 6 6 C 1.38033 * 119.60453 * 179.97438 * 5 4 3 7 7 O 1.35989 * 119.86828 * 180.02562 * 6 5 4 8 8 C 1.42902 * 117.00213 * 174.71957 * 7 6 5 9 9 H 1.08993 * 110.88738 * 321.26337 * 8 7 6 10 10 C 1.55155 * 111.00170 * 197.33938 * 8 7 6 11 11 C 1.54326 * 102.94261 * 206.42150 * 10 8 7 12 12 N 1.47023 * 107.26988 * 22.19682 * 11 10 8 13 13 C 1.36934 * 125.65078 * 181.01960 * 12 11 10 14 14 H 1.07997 * 120.00592 * 180.02562 * 13 12 11 15 15 C 1.38814 * 119.99839 * 0.04149 * 13 12 11 16 16 N 1.31614 * 120.00032 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00046 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46544 * 90.00111 * 17 15 13 19 19 H 1.48496 * 109.47149 * 210.00326 * 17 15 13 20 20 H 1.48496 * 109.47037 * 330.00488 * 17 15 13 21 21 C 1.47430 * 108.70209 * 1.06055 * 12 11 10 22 22 C 1.39276 * 120.26886 * 359.69816 * 6 5 4 23 23 C 1.37678 * 120.61615 * 0.60150 * 22 6 5 24 24 C 1.39101 * 119.99703 * 359.41223 * 23 22 6 25 25 N 1.36802 * 125.02792 * 179.97438 * 2 1 3 26 26 H 0.97003 * 125.07830 * 0.04102 * 25 2 1 27 27 H 1.09005 * 109.47080 * 90.00463 * 1 2 3 28 28 H 1.09000 * 109.47528 * 210.00233 * 1 2 3 29 29 H 1.08995 * 109.47228 * 330.00291 * 1 2 3 30 30 H 1.07999 * 126.48522 * 359.95195 * 3 2 1 31 31 H 1.08001 * 120.19763 * 359.95284 * 5 4 3 32 32 H 1.08994 * 110.72350 * 324.78869 * 10 8 7 33 33 H 1.09003 * 110.71882 * 88.06844 * 10 8 7 34 34 H 1.08999 * 109.88434 * 262.78220 * 11 10 8 35 35 H 1.08997 * 110.01037 * 141.68577 * 11 10 8 36 36 H 0.96999 * 120.00043 * 179.97438 * 16 15 13 37 37 H 1.09001 * 110.36311 * 217.03450 * 21 12 11 38 38 H 1.08996 * 110.36727 * 94.71218 * 21 12 11 39 39 H 1.07998 * 119.68846 * 180.28874 * 22 6 5 40 40 H 1.08003 * 119.99870 * 179.68593 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6708 0.6462 0.0006 5 6 4.9035 1.3030 0.0014 6 6 6.0696 0.5644 0.0024 7 8 7.2727 1.1983 0.0036 8 6 8.4376 0.3791 0.1218 9 1 8.2676 -0.4395 0.8210 10 6 9.6705 1.2226 0.5408 11 6 10.8536 0.4130 -0.0306 12 7 10.3249 -0.4252 -1.1166 13 6 11.0518 -1.3087 -1.8690 14 1 10.5686 -1.8802 -2.6477 15 6 12.4097 -1.4701 -1.6307 16 7 12.9985 -0.7744 -0.6813 17 14 13.4012 -2.6760 -2.6566 18 1 13.9464 -1.9795 -3.8496 19 1 14.5208 -3.2144 -1.8431 20 1 12.5246 -3.7924 -3.0928 21 6 8.8827 -0.1561 -1.2622 22 6 6.0191 -0.8274 0.0090 23 6 4.8096 -1.4852 0.0022 24 6 3.6231 -0.7591 0.0009 25 7 2.2922 -1.1202 0.0005 26 1 1.9621 -2.0324 0.0003 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9353 2.1235 -0.0007 31 1 4.9440 2.3822 0.0008 32 1 9.6296 2.2149 0.0916 33 1 9.7394 1.2920 1.6264 34 1 11.2823 -0.2171 0.7487 35 1 11.6144 1.0890 -0.4208 36 1 13.9473 -0.8874 -0.5145 37 1 8.3479 -1.0747 -1.5035 38 1 8.7130 0.5962 -2.0324 39 1 6.9373 -1.3960 0.0144 40 1 4.7821 -2.5648 0.0023 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228450724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:16 Heat of formation + Delta-G solvation = 27.328843 kcal Electronic energy + Delta-G solvation = -21744.069153 eV Core-core repulsion = 18524.439879 eV Total energy + Delta-G solvation = -3219.629274 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -42.22169 -40.71117 -38.44671 -36.63959 -34.28368 -32.99076 -31.77088 -31.24873 -29.92603 -28.81984 -27.46099 -26.46832 -23.30281 -23.16855 -22.06464 -21.33474 -21.15335 -19.03166 -18.97474 -18.49980 -16.86208 -16.75814 -16.44347 -16.14165 -15.74265 -15.38481 -15.22124 -14.83744 -14.30272 -14.20310 -13.99612 -13.85768 -13.85041 -13.60687 -13.43497 -13.20048 -12.93702 -12.79710 -12.71748 -12.20325 -12.14549 -12.04338 -11.87722 -11.75430 -11.43717 -11.18205 -10.73827 -10.64174 -8.97398 -8.82620 -8.45290 -7.87994 -5.25463 0.10420 0.65647 1.45975 1.48369 1.57036 1.76341 2.12547 2.28647 2.50355 2.88305 3.30812 3.62670 3.68211 3.81118 3.87515 3.94338 4.02036 4.14920 4.21162 4.42235 4.48552 4.53608 4.56764 4.62151 4.79281 4.82919 4.83658 4.95027 4.97768 5.05463 5.11533 5.18551 5.31975 5.40689 5.46875 5.58299 5.66067 5.69908 5.85973 6.09595 6.14901 6.57236 6.74646 7.05569 7.70294 8.34783 9.22571 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.034480 B = 0.003165 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.869863 B = 8845.499793 C = 9437.676309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.099 3.901 3 C -0.239 4.239 4 C -0.087 4.087 5 C -0.133 4.133 6 C 0.092 3.908 7 O -0.315 6.315 8 C 0.087 3.913 9 H 0.087 0.913 10 C -0.122 4.122 11 C 0.186 3.814 12 N -0.623 5.623 13 C -0.247 4.247 14 H 0.083 0.917 15 C -0.063 4.063 16 N -0.950 5.950 17 Si 0.983 3.017 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.268 1.268 21 C 0.118 3.882 22 C -0.191 4.191 23 C -0.086 4.086 24 C 0.048 3.952 25 N -0.586 5.586 26 H 0.427 0.573 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.159 0.841 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.024 0.976 35 H 0.016 0.984 36 H 0.249 0.751 37 H 0.049 0.951 38 H 0.021 0.979 39 H 0.131 0.869 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.883 0.317 3.686 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.011 4.011 3 C -0.263 4.263 4 C -0.092 4.092 5 C -0.153 4.153 6 C 0.047 3.953 7 O -0.228 6.228 8 C 0.029 3.971 9 H 0.104 0.896 10 C -0.160 4.160 11 C 0.062 3.938 12 N -0.351 5.351 13 C -0.376 4.376 14 H 0.101 0.899 15 C -0.257 4.257 16 N -0.599 5.599 17 Si 0.810 3.190 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.192 1.192 21 C -0.008 4.008 22 C -0.211 4.211 23 C -0.106 4.106 24 C -0.058 4.058 25 N -0.192 5.192 26 H 0.266 0.734 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.177 0.823 31 H 0.150 0.850 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.042 0.958 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.148 0.852 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -25.711 0.328 3.663 25.972 hybrid contribution 1.282 -1.024 -0.551 1.731 sum -24.429 -0.696 3.111 24.636 Atomic orbital electron populations 1.20622 0.84541 1.05182 1.04411 1.20937 0.95098 0.85060 0.99968 1.21664 0.89071 0.99299 1.16302 1.19204 0.93701 0.92551 1.03761 1.19708 0.88293 0.99903 1.07378 1.18887 0.85343 0.91339 0.99780 1.86060 1.12249 1.36114 1.88417 1.23414 0.83151 0.93526 0.96988 0.89568 1.22839 0.92227 0.99051 1.01898 1.20950 0.92080 0.91366 0.89445 1.44631 1.04041 1.47009 1.39423 1.19451 0.91183 1.14978 1.11976 0.89927 1.25695 0.97650 1.02003 1.00304 1.70156 1.10188 1.44926 1.34624 0.85025 0.78049 0.78451 0.77459 1.21294 1.21769 1.19242 1.22069 0.85295 0.97971 0.95492 1.21149 0.98928 0.93218 1.07769 1.20004 0.88564 1.00107 1.01918 1.18239 0.85605 0.94007 1.07987 1.41732 1.02892 1.09080 1.65460 0.73363 0.89132 0.89672 0.88388 0.82309 0.85012 0.90464 0.88744 0.95782 0.96572 0.94123 0.93247 0.96079 0.85171 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.39 71.24 0.74 0.14 16 2 C 0.10 1.57 7.08 40.87 0.29 1.86 16 3 C -0.24 -5.00 10.95 23.51 0.26 -4.74 16 4 C -0.09 -2.39 6.37 -20.20 -0.13 -2.52 16 5 C -0.13 -4.07 10.03 22.57 0.23 -3.84 16 6 C 0.09 3.07 6.62 22.47 0.15 3.22 16 7 O -0.31 -11.52 9.95 -93.42 -0.93 -12.45 16 8 C 0.09 3.31 2.82 31.99 0.09 3.40 16 9 H 0.09 3.16 6.60 -2.39 -0.02 3.14 16 10 C -0.12 -4.80 6.69 31.78 0.21 -4.59 16 11 C 0.19 9.47 5.38 86.73 0.47 9.94 16 12 N -0.62 -33.29 3.39 -691.98 -2.35 -35.64 16 13 C -0.25 -14.18 10.28 84.03 0.86 -13.31 16 14 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 15 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 16 N -0.95 -57.54 10.31 21.65 0.22 -57.32 16 17 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 C 0.12 5.21 6.59 86.85 0.57 5.78 16 22 C -0.19 -5.87 8.69 22.39 0.19 -5.67 16 23 C -0.09 -2.19 10.06 22.34 0.22 -1.97 16 24 C 0.05 1.18 7.27 38.98 0.28 1.47 16 25 N -0.59 -10.10 6.08 -175.83 -1.07 -11.17 16 26 H 0.43 4.51 8.96 -92.71 -0.83 3.68 16 27 H 0.09 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.09 3.21 8.14 -2.39 -0.02 3.20 16 34 H 0.02 1.33 7.38 -2.39 -0.02 1.31 16 35 H 0.02 0.91 7.50 -2.39 -0.02 0.89 16 36 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.05 2.10 7.22 -2.39 -0.02 2.08 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.13 4.11 5.26 -2.91 -0.02 4.09 16 40 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -71.16 327.40 3.04 -68.12 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.23 Total: 14.38 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 4.91 Total: -14.02 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.19 Total: -104.12 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.93 Total: -12.45 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -71.16 3.04 -68.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228450724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.449 kcal (2) G-P(sol) polarization free energy of solvation -71.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds