Wall clock time and date at job start Tue Mar 31 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34180 * 125.03736 * 2 1 4 4 C 1.46570 * 107.00679 * 180.02562 * 3 2 1 5 5 C 1.39642 * 133.93916 * 180.02562 * 4 3 2 6 6 C 1.36558 * 119.84082 * 179.97438 * 5 4 3 7 7 C 1.39273 * 120.47730 * 0.02562 * 6 5 4 8 8 O 1.35943 * 119.73289 * 179.97438 * 7 6 5 9 9 C 1.42892 * 117.00291 * 173.97114 * 8 7 6 10 10 C 1.53509 * 114.17186 * 201.67337 * 9 8 7 11 11 N 1.47482 * 87.93722 * 220.33209 * 10 9 8 12 12 C 1.46900 * 111.00163 * 138.70293 * 11 10 9 13 13 C 1.50697 * 109.46932 * 169.99983 * 12 11 10 14 14 H 1.07996 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99755 * 180.02562 * 13 12 11 16 16 N 1.31522 * 120.00126 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46981 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47214 * 299.99721 * 17 15 13 20 20 H 1.48496 * 109.46980 * 60.00378 * 17 15 13 21 21 C 1.47486 * 87.83031 * 27.01189 * 11 10 9 22 22 C 1.38205 * 120.54201 * 0.23238 * 7 6 5 23 23 C 1.39106 * 119.73739 * 359.49070 * 22 7 6 24 24 N 1.36965 * 125.03893 * 180.02562 * 2 1 3 25 25 H 0.97001 * 125.07137 * 359.97422 * 24 2 1 26 26 H 1.08996 * 109.47325 * 90.02593 * 1 2 3 27 27 H 1.09004 * 109.47187 * 210.01986 * 1 2 3 28 28 H 1.09001 * 109.47444 * 330.02558 * 1 2 3 29 29 H 1.07996 * 126.49849 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.07427 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.75919 * 180.02562 * 6 5 4 32 32 H 1.08994 * 113.25855 * 334.63375 * 9 8 7 33 33 H 1.09001 * 113.47507 * 105.56331 * 10 9 8 34 34 H 1.08996 * 113.48041 * 335.10122 * 10 9 8 35 35 H 1.08999 * 109.46757 * 50.00349 * 12 11 10 36 36 H 1.08992 * 109.46869 * 290.00602 * 12 11 10 37 37 H 0.96996 * 119.99996 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.47459 * 87.76148 * 21 11 10 39 39 H 1.08999 * 113.47125 * 218.22173 * 21 11 10 40 40 H 1.08002 * 120.13078 * 179.74773 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2774 1.0986 0.0000 4 6 3.6711 0.6450 -0.0006 5 6 4.9037 1.3012 -0.0005 6 6 6.0602 0.5749 -0.0007 7 6 6.0200 -0.8172 -0.0016 8 8 7.1805 -1.5252 -0.0024 9 6 7.0751 -2.9440 0.1304 10 6 8.3531 -3.6243 0.6408 11 7 8.1003 -4.7066 -0.3286 12 6 9.3468 -5.1332 -0.9784 13 6 9.0956 -6.3904 -1.7704 14 1 8.1087 -6.8285 -1.7894 15 6 10.1259 -6.9814 -2.4706 16 7 11.3277 -6.4476 -2.4477 17 14 9.8145 -8.5395 -3.4529 18 1 11.0746 -8.9707 -4.1097 19 1 9.3381 -9.6117 -2.5426 20 1 8.7831 -8.2742 -4.4879 21 6 7.3826 -3.7203 -1.1577 22 6 4.8100 -1.4849 -0.0072 23 6 3.6223 -0.7608 -0.0011 24 7 2.2934 -1.1214 -0.0005 25 1 1.9634 -2.0336 -0.0006 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 1.9353 2.1230 -0.0004 30 1 4.9422 2.3805 -0.0002 31 1 7.0127 1.0838 -0.0001 32 1 6.1659 -3.2621 0.6404 33 1 8.2876 -3.9477 1.6796 34 1 9.2601 -3.0572 0.4317 35 1 10.1043 -5.3273 -0.2191 36 1 9.6957 -4.3462 -1.6468 37 1 12.0526 -6.8635 -2.9400 38 1 8.0307 -3.1789 -1.8469 39 1 6.4947 -4.1253 -1.6432 40 1 4.7866 -2.5647 -0.0120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229829012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:07 Heat of formation + Delta-G solvation = 58.633519 kcal Electronic energy + Delta-G solvation = -21339.788536 eV Core-core repulsion = 18121.516735 eV Total energy + Delta-G solvation = -3218.271801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38976 -40.03578 -38.07704 -35.70971 -32.88626 -32.23788 -30.59747 -29.51717 -29.18162 -26.56371 -25.53876 -25.07845 -22.84990 -21.93809 -20.99218 -20.39342 -19.46655 -18.37665 -17.01640 -16.28922 -16.25803 -15.45988 -15.17001 -14.76742 -14.60591 -14.44281 -14.06879 -13.92489 -13.53279 -13.38295 -13.02275 -12.87952 -12.77044 -12.28352 -12.16637 -12.02557 -11.67244 -11.44123 -11.19725 -10.93759 -10.81190 -10.62617 -10.27422 -10.01274 -9.81347 -9.41282 -9.27661 -8.46440 -8.08905 -8.01588 -7.50079 -6.05851 -4.07649 1.09445 1.64094 2.56457 2.93867 3.32274 3.35808 3.36987 3.40603 3.87698 4.40693 4.49600 4.65207 4.74339 4.85488 4.92953 4.98920 5.16949 5.17422 5.23415 5.29238 5.32843 5.36331 5.48094 5.58103 5.78403 5.86986 5.91144 5.97190 6.08253 6.20234 6.25403 6.39034 6.45064 6.49557 6.62378 6.72915 6.97718 7.13753 7.40317 7.59042 7.65191 7.79574 8.04695 8.39418 8.98921 9.56359 11.05226 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.002952 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.196020 B = 9481.666268 C =10192.969238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.063 3.937 3 C -0.194 4.194 4 C -0.147 4.147 5 C -0.037 4.037 6 C -0.170 4.170 7 C 0.162 3.838 8 O -0.299 6.299 9 C 0.043 3.957 10 C 0.004 3.996 11 N -0.461 5.461 12 C 0.161 3.839 13 C -0.507 4.507 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.901 3.099 18 H -0.287 1.287 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.004 4.004 22 C -0.231 4.231 23 C 0.138 3.862 24 N -0.595 5.595 25 H 0.413 0.587 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.143 0.857 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.007 0.993 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.063 15.508 6.142 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C -0.219 4.219 4 C -0.151 4.151 5 C -0.056 4.056 6 C -0.189 4.189 7 C 0.115 3.885 8 O -0.211 6.211 9 C -0.014 4.014 10 C -0.125 4.125 11 N -0.186 5.186 12 C 0.035 3.965 13 C -0.546 4.546 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.729 3.271 18 H -0.213 1.213 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.133 4.133 22 C -0.253 4.253 23 C 0.030 3.970 24 N -0.199 5.199 25 H 0.249 0.751 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.161 0.839 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.124 0.876 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.028 14.798 6.246 24.901 hybrid contribution 0.232 -0.871 -0.916 1.285 sum -18.797 13.927 5.331 23.994 Atomic orbital electron populations 1.20433 0.87947 1.03490 1.02978 1.20247 0.93242 0.85895 1.05009 1.21379 0.90404 0.97487 1.12601 1.19096 0.93608 0.91983 1.10430 1.20036 0.89731 0.99246 0.96552 1.20002 0.99120 0.90686 1.09102 1.18621 0.84526 0.91232 0.94148 1.86210 1.27962 1.20339 1.86611 1.24497 1.00560 0.76647 0.99694 1.24028 0.95838 0.92860 0.99814 1.69017 1.21031 1.20161 1.08383 1.20280 0.85836 0.96408 0.93944 1.21034 0.96193 1.08869 1.28500 0.91897 1.25009 0.95014 0.97848 0.96811 1.69946 1.00899 1.40308 1.42690 0.86514 0.77359 0.83171 0.80096 1.21284 1.20129 1.20246 1.24279 1.00547 0.93085 0.95379 1.20015 0.89493 0.99804 1.16017 1.17827 0.84051 0.93751 1.01381 1.41745 1.03999 1.08161 1.66020 0.75060 0.90661 0.91523 0.89869 0.83933 0.85450 0.85111 0.87606 0.89732 0.90829 0.95039 0.97543 0.92773 0.90646 0.90270 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.39 36.01 0.37 -0.12 16 2 C 0.06 0.58 7.08 -81.73 -0.58 0.00 16 3 C -0.19 -2.02 10.95 -37.65 -0.41 -2.44 16 4 C -0.15 -1.86 6.37 -105.10 -0.67 -2.53 16 5 C -0.04 -0.44 10.04 -39.66 -0.40 -0.84 16 6 C -0.17 -2.21 9.91 -39.80 -0.39 -2.61 16 7 C 0.16 2.39 6.67 -39.21 -0.26 2.13 16 8 O -0.30 -4.88 10.18 -19.56 -0.20 -5.08 16 9 C 0.04 0.70 3.99 -26.20 -0.10 0.59 16 10 C 0.00 0.07 7.52 -7.55 -0.06 0.01 16 11 N -0.46 -10.11 6.32 -246.13 -1.55 -11.67 16 12 C 0.16 4.25 4.57 -4.98 -0.02 4.23 16 13 C -0.51 -14.56 9.39 -34.44 -0.32 -14.89 16 14 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 17 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.00 -0.07 7.55 -7.55 -0.06 -0.13 16 22 C -0.23 -3.20 9.03 -39.27 -0.35 -3.56 16 23 C 0.14 1.79 7.27 -83.99 -0.61 1.18 16 24 N -0.59 -6.10 6.08 -6.94 -0.04 -6.15 16 25 H 0.41 3.20 8.96 -40.82 -0.37 2.84 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.11 1.56 5.99 -51.93 -0.31 1.24 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.07 1.37 7.91 -51.93 -0.41 0.96 16 35 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.01 0.19 7.30 -51.93 -0.38 -0.19 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 1.54 7.42 -51.93 -0.39 1.15 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.13 1.70 5.90 -52.49 -0.31 1.39 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -32.43 335.50 -10.50 -42.93 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.51 Total: 1.74 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -3.97 Total: -17.48 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.86 Total: -44.02 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.20 Total: -5.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.43 -10.50 -42.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229829012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.567 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds