Wall clock time and date at job start Tue Mar 31 2020 06:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34180 * 125.03736 * 2 1 4 4 C 1.46570 * 107.00679 * 180.02562 * 3 2 1 5 5 C 1.39642 * 133.93916 * 180.02562 * 4 3 2 6 6 C 1.36558 * 119.84082 * 179.97438 * 5 4 3 7 7 C 1.39273 * 120.47730 * 0.02562 * 6 5 4 8 8 O 1.35943 * 119.73289 * 179.97438 * 7 6 5 9 9 C 1.42892 * 117.00291 * 173.97114 * 8 7 6 10 10 C 1.53509 * 114.17186 * 201.67337 * 9 8 7 11 11 N 1.47482 * 87.93722 * 220.33209 * 10 9 8 12 12 C 1.46900 * 111.00163 * 138.70293 * 11 10 9 13 13 C 1.50697 * 109.46932 * 169.99983 * 12 11 10 14 14 H 1.07996 * 119.99967 * 0.02562 * 13 12 11 15 15 C 1.37876 * 119.99755 * 180.02562 * 13 12 11 16 16 N 1.31522 * 120.00126 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99907 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46981 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47214 * 299.99721 * 17 15 13 20 20 H 1.48496 * 109.46980 * 60.00378 * 17 15 13 21 21 C 1.47486 * 87.83031 * 27.01189 * 11 10 9 22 22 C 1.38205 * 120.54201 * 0.23238 * 7 6 5 23 23 C 1.39106 * 119.73739 * 359.49070 * 22 7 6 24 24 N 1.36965 * 125.03893 * 180.02562 * 2 1 3 25 25 H 0.97001 * 125.07137 * 359.97422 * 24 2 1 26 26 H 1.08996 * 109.47325 * 90.02593 * 1 2 3 27 27 H 1.09004 * 109.47187 * 210.01986 * 1 2 3 28 28 H 1.09001 * 109.47444 * 330.02558 * 1 2 3 29 29 H 1.07996 * 126.49849 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.07427 * 359.97438 * 5 4 3 31 31 H 1.07999 * 119.75919 * 180.02562 * 6 5 4 32 32 H 1.08994 * 113.25855 * 334.63375 * 9 8 7 33 33 H 1.09001 * 113.47507 * 105.56331 * 10 9 8 34 34 H 1.08996 * 113.48041 * 335.10122 * 10 9 8 35 35 H 1.08999 * 109.46757 * 50.00349 * 12 11 10 36 36 H 1.08992 * 109.46869 * 290.00602 * 12 11 10 37 37 H 0.96996 * 119.99996 * 179.97438 * 16 15 13 38 38 H 1.09000 * 113.47459 * 87.76148 * 21 11 10 39 39 H 1.08999 * 113.47125 * 218.22173 * 21 11 10 40 40 H 1.08002 * 120.13078 * 179.74773 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2774 1.0986 0.0000 4 6 3.6711 0.6450 -0.0006 5 6 4.9037 1.3012 -0.0005 6 6 6.0602 0.5749 -0.0007 7 6 6.0200 -0.8172 -0.0016 8 8 7.1805 -1.5252 -0.0024 9 6 7.0751 -2.9440 0.1304 10 6 8.3531 -3.6243 0.6408 11 7 8.1003 -4.7066 -0.3286 12 6 9.3468 -5.1332 -0.9784 13 6 9.0956 -6.3904 -1.7704 14 1 8.1087 -6.8285 -1.7894 15 6 10.1259 -6.9814 -2.4706 16 7 11.3277 -6.4476 -2.4477 17 14 9.8145 -8.5395 -3.4529 18 1 11.0746 -8.9707 -4.1097 19 1 9.3381 -9.6117 -2.5426 20 1 8.7831 -8.2742 -4.4879 21 6 7.3826 -3.7203 -1.1577 22 6 4.8100 -1.4849 -0.0072 23 6 3.6223 -0.7608 -0.0011 24 7 2.2934 -1.1214 -0.0005 25 1 1.9634 -2.0336 -0.0006 26 1 -0.3634 -0.0005 -1.0276 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5134 29 1 1.9353 2.1230 -0.0004 30 1 4.9422 2.3805 -0.0002 31 1 7.0127 1.0838 -0.0001 32 1 6.1659 -3.2621 0.6404 33 1 8.2876 -3.9477 1.6796 34 1 9.2601 -3.0572 0.4317 35 1 10.1043 -5.3273 -0.2191 36 1 9.6957 -4.3462 -1.6468 37 1 12.0526 -6.8635 -2.9400 38 1 8.0307 -3.1789 -1.8469 39 1 6.4947 -4.1253 -1.6432 40 1 4.7866 -2.5647 -0.0120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229829012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:05 Heat of formation + Delta-G solvation = 36.799638 kcal Electronic energy + Delta-G solvation = -21340.735324 eV Core-core repulsion = 18121.516735 eV Total energy + Delta-G solvation = -3219.218589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.29342 -41.40550 -39.36245 -36.77049 -35.03727 -33.02928 -31.61915 -30.97466 -30.27895 -27.74560 -27.07268 -26.63847 -24.19513 -23.22694 -22.24518 -21.26188 -20.85604 -19.43000 -18.65175 -17.94316 -17.19180 -16.91688 -16.52193 -16.35052 -15.74462 -15.64372 -15.31525 -14.86128 -14.84489 -14.48093 -14.15699 -13.96455 -13.78863 -13.57073 -13.51276 -13.32407 -13.02859 -12.88511 -12.53035 -12.40265 -12.29651 -12.11206 -11.84594 -11.70669 -11.34954 -11.19918 -10.64844 -10.38861 -9.84645 -9.01409 -8.41696 -8.26035 -6.37214 0.16680 0.65392 1.38413 1.42137 1.50355 1.76560 2.05961 2.24849 2.38235 2.88939 3.06012 3.23165 3.33049 3.72434 3.80044 3.91673 4.02316 4.20775 4.36118 4.39823 4.41439 4.45896 4.54238 4.57062 4.63453 4.74505 4.79355 4.81236 4.81789 4.99380 5.02552 5.07880 5.15107 5.36469 5.49483 5.50711 5.68142 5.72758 5.90678 5.98829 6.06451 6.32118 6.49486 6.70401 6.76012 7.32303 8.85291 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.026429 B = 0.002952 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.196020 B = 9481.666268 C =10192.969238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.071 3.929 3 C -0.214 4.214 4 C -0.161 4.161 5 C -0.035 4.035 6 C -0.181 4.181 7 C 0.132 3.868 8 O -0.312 6.312 9 C 0.072 3.928 10 C 0.001 3.999 11 N -0.474 5.474 12 C 0.176 3.824 13 C -0.530 4.530 14 H 0.061 0.939 15 C 0.001 3.999 16 N -0.934 5.934 17 Si 0.974 3.026 18 H -0.280 1.280 19 H -0.266 1.266 20 H -0.268 1.268 21 C -0.008 4.008 22 C -0.235 4.235 23 C 0.115 3.885 24 N -0.591 5.591 25 H 0.423 0.577 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.165 0.835 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.006 0.994 36 H -0.020 1.020 37 H 0.266 0.734 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.886 15.846 6.247 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.036 4.036 3 C -0.238 4.238 4 C -0.166 4.166 5 C -0.054 4.054 6 C -0.200 4.200 7 C 0.086 3.914 8 O -0.225 6.225 9 C 0.015 3.985 10 C -0.128 4.128 11 N -0.198 5.198 12 C 0.049 3.951 13 C -0.568 4.568 14 H 0.079 0.921 15 C -0.197 4.197 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.205 1.205 19 H -0.191 1.191 20 H -0.193 1.193 21 C -0.138 4.138 22 C -0.256 4.256 23 C 0.006 3.994 24 N -0.196 5.196 25 H 0.262 0.738 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.118 0.882 29 H 0.182 0.818 30 H 0.173 0.827 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.025 0.975 36 H -0.002 1.002 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.883 15.145 6.364 27.363 hybrid contribution 0.981 -0.854 -0.921 1.593 sum -20.902 14.291 5.443 25.899 Atomic orbital electron populations 1.20573 0.84968 1.04944 1.04123 1.20919 0.94991 0.85138 1.02543 1.21723 0.89376 0.99053 1.13637 1.19561 0.94975 0.92195 1.09848 1.20353 0.89064 1.00616 0.95336 1.20206 1.00153 0.90199 1.09446 1.18875 0.84233 0.91882 0.96369 1.86170 1.29228 1.19835 1.87254 1.24145 1.00218 0.77049 0.97101 1.24083 0.96646 0.91946 1.00136 1.68902 1.18923 1.22440 1.09514 1.19939 0.87224 0.95221 0.92711 1.21372 0.96316 1.09843 1.29273 0.92061 1.25975 0.94597 1.01417 0.97756 1.70074 1.01861 1.41967 1.43479 0.85374 0.77604 0.78693 0.78585 1.20547 1.19123 1.19261 1.24290 1.00067 0.92987 0.96437 1.20054 0.89729 0.99961 1.15904 1.17971 0.84891 0.94222 1.02269 1.41872 1.03217 1.09241 1.65315 0.73826 0.89520 0.90278 0.88244 0.81777 0.82687 0.84293 0.85376 0.87524 0.91780 0.97544 1.00207 0.92478 0.92502 0.89367 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 10.39 71.24 0.74 0.08 16 2 C 0.07 1.13 7.08 40.83 0.29 1.42 16 3 C -0.21 -3.95 10.95 23.52 0.26 -3.69 16 4 C -0.16 -3.84 6.37 -20.17 -0.13 -3.97 16 5 C -0.04 -0.79 10.04 22.22 0.22 -0.57 16 6 C -0.18 -4.64 9.91 22.13 0.22 -4.42 16 7 C 0.13 3.91 6.67 22.51 0.15 4.06 16 8 O -0.31 -10.30 10.18 -92.91 -0.95 -11.24 16 9 C 0.07 2.34 3.99 30.94 0.12 2.46 16 10 C 0.00 0.03 7.52 83.57 0.63 0.66 16 11 N -0.47 -21.26 6.32 -932.99 -5.89 -27.15 16 12 C 0.18 9.69 4.57 85.56 0.39 10.08 16 13 C -0.53 -31.08 9.39 25.60 0.24 -30.84 16 14 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 15 C 0.00 0.05 5.46 84.65 0.46 0.51 16 16 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 17 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 C -0.01 -0.33 7.55 83.57 0.63 0.30 16 22 C -0.23 -6.38 9.03 22.47 0.20 -6.18 16 23 C 0.12 2.86 7.27 39.02 0.28 3.14 16 24 N -0.59 -11.01 6.08 -175.87 -1.07 -12.08 16 25 H 0.42 5.75 8.96 -92.71 -0.83 4.92 16 26 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.13 3.62 5.99 -2.39 -0.01 3.61 16 33 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.06 2.48 7.91 -2.39 -0.02 2.46 16 35 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 36 H -0.02 -1.17 7.30 -2.39 -0.02 -1.19 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.06 2.44 7.42 -2.39 -0.02 2.43 16 39 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.13 3.36 5.90 -2.91 -0.02 3.34 16 Total: -1.00 -71.11 335.50 -0.66 -71.77 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.22 Total: 15.55 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 4.71 Total: -26.95 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -6.68 Total: -96.10 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.95 Total: -11.24 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -71.11 -0.66 -71.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229829012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.571 kcal (2) G-P(sol) polarization free energy of solvation -71.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds