Wall clock time and date at job start Tue Mar 31 2020 05:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00092 * 2 1 4 4 N 1.46494 * 109.47166 * 125.00253 * 3 2 1 5 5 C 1.46504 * 119.99879 * 269.99927 * 4 3 2 6 6 C 1.50700 * 109.47258 * 270.00091 * 5 4 3 7 7 H 1.08003 * 119.99992 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99975 * 180.02562 * 6 5 4 9 9 N 1.31505 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99768 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47332 * 59.99747 * 10 8 6 12 12 H 1.48505 * 109.47098 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47404 * 299.99826 * 10 8 6 14 14 C 1.34778 * 120.00255 * 90.00322 * 4 3 2 15 15 O 1.21663 * 120.00160 * 179.97438 * 14 4 3 16 16 C 1.46651 * 120.00008 * 359.97438 * 14 4 3 17 17 C 1.34634 * 120.00373 * 180.02562 * 16 14 4 18 18 C 1.47399 * 120.00410 * 180.02562 * 17 16 14 19 19 C 1.40164 * 120.94596 * 359.97438 * 18 17 16 20 20 C 1.37979 * 118.96621 * 179.97438 * 19 18 17 21 21 N 1.31896 * 120.92674 * 0.02562 * 20 19 18 22 22 C 1.31874 * 122.11541 * 359.97438 * 21 20 19 23 23 C 1.38025 * 120.92062 * 0.02562 * 22 21 20 24 24 C 1.50704 * 120.51230 * 179.97438 * 23 22 21 25 25 H 1.08000 * 119.99849 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00186 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00186 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47087 * 4.99682 * 3 2 1 29 29 H 1.09010 * 109.47023 * 245.00313 * 3 2 1 30 30 H 1.09000 * 109.47134 * 30.00139 * 5 4 3 31 31 H 1.09003 * 109.46688 * 150.00087 * 5 4 3 32 32 H 0.97004 * 119.99821 * 179.97438 * 9 8 6 33 33 H 1.08003 * 119.99690 * 0.02562 * 16 14 4 34 34 H 1.08003 * 119.99937 * 359.97438 * 17 16 14 35 35 H 1.07995 * 120.51795 * 359.95015 * 19 18 17 36 36 H 1.07995 * 119.53453 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.53676 * 179.71982 * 22 21 20 38 38 H 1.08997 * 109.46450 * 90.00377 * 24 23 22 39 39 H 1.09001 * 109.46662 * 209.99873 * 24 23 22 40 40 H 1.08996 * 109.47507 * 330.00070 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3436 2.4804 7 1 3.3040 3.8369 1.6367 8 6 2.5194 4.0665 3.6086 9 7 1.9600 3.4657 4.6360 10 14 2.8738 5.8992 3.6777 11 1 2.1381 6.5872 2.5866 12 1 2.4329 6.4396 4.9888 13 1 4.3317 6.1281 3.5125 14 6 4.2497 0.8662 0.9823 15 8 5.0224 0.8888 1.9217 16 6 4.6849 0.3321 -0.3123 17 6 5.9394 -0.1335 -0.4612 18 6 6.3770 -0.6698 -1.7626 19 6 5.5035 -0.7049 -2.8582 20 6 5.9562 -1.2151 -4.0576 21 7 7.1898 -1.6654 -4.1803 22 6 8.0444 -1.6513 -3.1760 23 6 7.6779 -1.1589 -1.9397 24 6 8.6618 -1.1478 -0.7982 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6213 1.4026 -0.9315 30 1 1.4888 1.6966 2.5459 31 1 3.0990 1.3602 3.2259 32 1 1.7318 3.9742 5.4299 33 1 3.9991 0.3124 -1.1464 34 1 6.6253 -0.1134 0.3728 35 1 4.4918 -0.3387 -2.7649 36 1 5.2908 -1.2469 -4.9076 37 1 9.0435 -2.0348 -3.3216 38 1 9.2132 -0.2076 -0.8032 39 1 8.1250 -1.2492 0.1450 40 1 9.3586 -1.9783 -0.9109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493586962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:04 Heat of formation + Delta-G solvation = 35.954180 kcal Electronic energy + Delta-G solvation = -21522.192825 eV Core-core repulsion = 18302.937574 eV Total energy + Delta-G solvation = -3219.255251 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41548 -39.12744 -35.82524 -34.97495 -33.31373 -33.03514 -32.09942 -30.62678 -27.90124 -27.31649 -25.66757 -24.87703 -23.11327 -22.09989 -20.62409 -19.85503 -18.35813 -17.42542 -16.64028 -16.44802 -15.96465 -15.48354 -15.13462 -14.70961 -14.53273 -14.34213 -14.11033 -13.55863 -13.33829 -13.14505 -12.99772 -12.90067 -12.57377 -12.22925 -11.89654 -11.72702 -11.35979 -11.27511 -11.12508 -10.93966 -10.88626 -10.60636 -10.21557 -9.69605 -9.65946 -9.24103 -9.17180 -9.08998 -8.67623 -8.45446 -7.73449 -6.06541 -4.11722 0.43260 0.94001 2.09595 2.41290 3.30382 3.34916 3.37823 3.63162 3.85734 3.96954 4.25334 4.41145 4.52471 4.54991 4.66685 4.79608 4.99160 5.11509 5.26179 5.28300 5.29485 5.37832 5.43854 5.47193 5.59954 5.61413 5.73176 5.80894 5.97221 6.00920 6.15031 6.31465 6.45935 6.51801 6.75671 6.87538 7.06178 7.40669 7.48995 7.78547 7.89341 8.19879 8.33007 8.84907 9.00668 9.53300 11.01512 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.003856 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.078397 B = 7260.019801 C = 8170.299913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.170 4.170 3 C 0.134 3.866 4 N -0.584 5.584 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.531 3.469 15 O -0.539 6.539 16 C -0.166 4.166 17 C -0.066 4.066 18 C -0.015 4.015 19 C -0.160 4.160 20 C 0.091 3.909 21 N -0.486 5.486 22 C 0.096 3.904 23 C -0.122 4.122 24 C -0.117 4.117 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 -9.865 -15.437 19.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.189 4.189 3 C 0.010 3.990 4 N -0.314 5.314 5 C 0.128 3.872 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.319 3.681 15 O -0.418 6.418 16 C -0.187 4.187 17 C -0.085 4.085 18 C -0.023 4.023 19 C -0.179 4.179 20 C -0.065 4.065 21 N -0.195 5.195 22 C -0.060 4.060 23 C -0.124 4.124 24 C -0.174 4.174 25 H 0.113 0.887 26 H 0.118 0.882 27 H 0.123 0.877 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.687 -10.121 -15.532 19.391 hybrid contribution -0.351 1.365 0.849 1.645 sum 5.336 -8.756 -14.683 17.909 Atomic orbital electron populations 1.23829 0.95833 1.01811 1.00367 1.23440 0.96431 0.98966 1.00077 1.20642 0.93064 0.95495 0.89757 1.48153 1.10255 1.59289 1.13726 1.19308 0.95499 0.93803 0.78589 1.21391 1.40781 0.93242 1.01346 0.92461 1.24925 0.94992 0.98787 0.95293 1.69921 1.41882 1.36313 1.05163 0.86558 0.78856 0.84823 0.77183 1.20228 1.21141 1.20159 1.18179 0.82698 0.79270 0.87908 1.90779 1.52627 1.56701 1.41703 1.23473 0.97045 0.99999 0.98226 1.22245 0.96474 0.94933 0.94870 1.19340 0.93140 0.96099 0.93707 1.22426 1.00996 1.00968 0.93539 1.22633 0.92474 0.94621 0.96746 1.67563 1.03632 1.15342 1.32915 1.22583 0.99022 0.96541 0.87902 1.21145 0.94840 0.99098 0.97275 1.20816 0.97579 1.02900 0.96145 0.88738 0.88240 0.87725 0.89274 0.90708 0.94821 0.93772 0.92621 0.85472 0.84086 0.84350 0.82654 0.82747 0.90418 0.90489 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 29.02 0.42 -1.85 16 2 C -0.17 -2.34 9.85 -36.02 -0.35 -2.70 16 3 C 0.13 2.12 5.56 -5.20 -0.03 2.09 16 4 N -0.58 -12.20 2.44 -177.99 -0.43 -12.64 16 5 C 0.25 6.41 5.16 -5.19 -0.03 6.39 16 6 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 7 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 10 Si 0.90 21.73 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.53 10.97 7.61 -12.86 -0.10 10.87 16 15 O -0.54 -13.43 15.81 5.22 0.08 -13.35 16 16 C -0.17 -2.50 8.63 -37.46 -0.32 -2.83 16 17 C -0.07 -0.91 8.94 -37.13 -0.33 -1.24 16 18 C -0.01 -0.18 5.90 -104.74 -0.62 -0.80 16 19 C -0.16 -1.68 9.49 -38.95 -0.37 -2.05 16 20 C 0.09 0.93 11.17 -17.62 -0.20 0.73 16 21 N -0.49 -5.63 10.34 -13.35 -0.14 -5.77 16 22 C 0.10 1.00 10.85 -17.61 -0.19 0.81 16 23 C -0.12 -1.31 5.94 -104.00 -0.62 -1.92 16 24 C -0.12 -1.03 9.59 36.01 0.35 -0.69 16 25 H 0.09 1.02 8.06 -52.49 -0.42 0.60 16 26 H 0.10 1.23 7.84 -52.49 -0.41 0.82 16 27 H 0.10 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.09 1.46 7.72 -51.93 -0.40 1.06 16 29 H 0.07 0.97 6.09 -51.92 -0.32 0.65 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.13 1.53 4.32 -52.48 -0.23 1.30 16 34 H 0.14 2.07 5.96 -52.48 -0.31 1.76 16 35 H 0.14 1.20 6.30 -52.49 -0.33 0.87 16 36 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.16 1.18 8.06 -52.48 -0.42 0.76 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.73 6.45 -51.93 -0.34 0.40 16 40 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -33.65 345.36 -7.60 -41.26 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.22 Total: 1.00 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.82 Total: -6.71 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.16 Total: -44.10 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.08 Total: -13.35 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.65 -7.60 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493586962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.212 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds