Wall clock time and date at job start Tue Mar 31 2020 05:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50700 * 120.00092 * 2 1 4 4 N 1.46494 * 109.47166 * 125.00253 * 3 2 1 5 5 C 1.46504 * 119.99879 * 269.99927 * 4 3 2 6 6 C 1.50700 * 109.47258 * 270.00091 * 5 4 3 7 7 H 1.08003 * 119.99992 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99975 * 180.02562 * 6 5 4 9 9 N 1.31505 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99768 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47332 * 59.99747 * 10 8 6 12 12 H 1.48505 * 109.47098 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47404 * 299.99826 * 10 8 6 14 14 C 1.34778 * 120.00255 * 90.00322 * 4 3 2 15 15 O 1.21663 * 120.00160 * 179.97438 * 14 4 3 16 16 C 1.46651 * 120.00008 * 359.97438 * 14 4 3 17 17 C 1.34634 * 120.00373 * 180.02562 * 16 14 4 18 18 C 1.47399 * 120.00410 * 180.02562 * 17 16 14 19 19 C 1.40164 * 120.94596 * 359.97438 * 18 17 16 20 20 C 1.37979 * 118.96621 * 179.97438 * 19 18 17 21 21 N 1.31896 * 120.92674 * 0.02562 * 20 19 18 22 22 C 1.31874 * 122.11541 * 359.97438 * 21 20 19 23 23 C 1.38025 * 120.92062 * 0.02562 * 22 21 20 24 24 C 1.50704 * 120.51230 * 179.97438 * 23 22 21 25 25 H 1.08000 * 119.99849 * 180.02562 * 1 2 3 26 26 H 1.07999 * 120.00186 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00186 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47087 * 4.99682 * 3 2 1 29 29 H 1.09010 * 109.47023 * 245.00313 * 3 2 1 30 30 H 1.09000 * 109.47134 * 30.00139 * 5 4 3 31 31 H 1.09003 * 109.46688 * 150.00087 * 5 4 3 32 32 H 0.97004 * 119.99821 * 179.97438 * 9 8 6 33 33 H 1.08003 * 119.99690 * 0.02562 * 16 14 4 34 34 H 1.08003 * 119.99937 * 359.97438 * 17 16 14 35 35 H 1.07995 * 120.51795 * 359.95015 * 19 18 17 36 36 H 1.07995 * 119.53453 * 179.97438 * 20 19 18 37 37 H 1.08003 * 119.53676 * 179.71982 * 22 21 20 38 38 H 1.08997 * 109.46450 * 90.00377 * 24 23 22 39 39 H 1.09001 * 109.46662 * 209.99873 * 24 23 22 40 40 H 1.08996 * 109.47507 * 330.00070 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 2.5589 1.8649 2.4248 6 6 2.8442 3.3436 2.4804 7 1 3.3040 3.8369 1.6367 8 6 2.5194 4.0665 3.6086 9 7 1.9600 3.4657 4.6360 10 14 2.8738 5.8992 3.6777 11 1 2.1381 6.5872 2.5866 12 1 2.4329 6.4396 4.9888 13 1 4.3317 6.1281 3.5125 14 6 4.2497 0.8662 0.9823 15 8 5.0224 0.8888 1.9217 16 6 4.6849 0.3321 -0.3123 17 6 5.9394 -0.1335 -0.4612 18 6 6.3770 -0.6698 -1.7626 19 6 5.5035 -0.7049 -2.8582 20 6 5.9562 -1.2151 -4.0576 21 7 7.1898 -1.6654 -4.1803 22 6 8.0444 -1.6513 -3.1760 23 6 7.6779 -1.1589 -1.9397 24 6 8.6618 -1.1478 -0.7982 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3585 2.1316 0.0895 29 1 2.6213 1.4026 -0.9315 30 1 1.4888 1.6966 2.5459 31 1 3.0990 1.3602 3.2259 32 1 1.7318 3.9742 5.4299 33 1 3.9991 0.3124 -1.1464 34 1 6.6253 -0.1134 0.3728 35 1 4.4918 -0.3387 -2.7649 36 1 5.2908 -1.2469 -4.9076 37 1 9.0435 -2.0348 -3.3216 38 1 9.2132 -0.2076 -0.8032 39 1 8.1250 -1.2492 0.1450 40 1 9.3586 -1.9783 -0.9109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493586962.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:03 Heat of formation + Delta-G solvation = 15.793388 kcal Electronic energy + Delta-G solvation = -21523.067062 eV Core-core repulsion = 18302.937574 eV Total energy + Delta-G solvation = -3220.129489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.29630 -40.66673 -37.32238 -36.03228 -35.11315 -33.94347 -33.68431 -31.70523 -29.67384 -28.17449 -26.98844 -26.27555 -24.64208 -23.06589 -21.86604 -20.95970 -19.69497 -18.76579 -18.50303 -17.68314 -17.09705 -16.92757 -16.23075 -16.11004 -15.92751 -15.53320 -15.30725 -14.68354 -14.36959 -14.31822 -14.23610 -14.16669 -13.70171 -13.58784 -13.32558 -13.00414 -12.92928 -12.72887 -12.58756 -12.27400 -12.23160 -12.20936 -11.94373 -11.70210 -10.78714 -10.65484 -10.46751 -10.31778 -9.98293 -9.74568 -9.42299 -8.23279 -6.38550 -0.58437 0.17242 1.00062 1.32707 1.36846 1.40509 1.48165 2.27121 2.42122 2.46629 2.90101 3.06327 3.39569 3.56862 3.71288 3.86686 3.92574 4.01796 4.07746 4.13674 4.26780 4.43101 4.55096 4.67728 4.74722 4.79205 4.85734 4.88009 4.90993 5.02959 5.06221 5.18719 5.22659 5.33509 5.47030 5.50646 5.71600 5.73600 5.75325 5.94612 6.04319 6.66661 6.73447 7.00017 7.24991 7.40857 8.83747 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.003856 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.078397 B = 7260.019801 C = 8170.299913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.185 4.185 3 C 0.130 3.870 4 N -0.590 5.590 5 C 0.264 3.736 6 C -0.546 4.546 7 H 0.054 0.946 8 C 0.009 3.991 9 N -0.928 5.928 10 Si 0.967 3.033 11 H -0.259 1.259 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.523 3.477 15 O -0.599 6.599 16 C -0.179 4.179 17 C -0.038 4.038 18 C -0.040 4.040 19 C -0.154 4.154 20 C 0.086 3.914 21 N -0.502 5.502 22 C 0.091 3.909 23 C -0.122 4.122 24 C -0.118 4.118 25 H 0.116 0.884 26 H 0.099 0.901 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.023 0.977 31 H -0.003 1.003 32 H 0.268 0.732 33 H 0.164 0.836 34 H 0.126 0.874 35 H 0.159 0.841 36 H 0.184 0.816 37 H 0.180 0.820 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -9.926 -18.177 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C 0.009 3.991 4 N -0.319 5.319 5 C 0.143 3.857 6 C -0.584 4.584 7 H 0.072 0.928 8 C -0.190 4.190 9 N -0.567 5.567 10 Si 0.791 3.209 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.315 3.685 15 O -0.482 6.482 16 C -0.200 4.200 17 C -0.058 4.058 18 C -0.048 4.048 19 C -0.173 4.173 20 C -0.069 4.069 21 N -0.211 5.211 22 C -0.065 4.065 23 C -0.124 4.124 24 C -0.175 4.175 25 H 0.135 0.865 26 H 0.118 0.882 27 H 0.131 0.869 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.041 0.959 31 H 0.015 0.985 32 H 0.076 0.924 33 H 0.181 0.819 34 H 0.144 0.856 35 H 0.177 0.823 36 H 0.201 0.799 37 H 0.197 0.803 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.715 -10.195 -18.324 21.734 hybrid contribution -0.317 1.283 1.644 2.109 sum 5.399 -8.912 -16.680 19.667 Atomic orbital electron populations 1.24057 0.95512 1.02908 0.98070 1.23325 0.96801 0.98153 1.02083 1.20910 0.92619 0.96504 0.89112 1.48115 1.11489 1.58961 1.13307 1.18720 0.93956 0.92765 0.80284 1.21680 1.40844 0.94361 1.01547 0.92762 1.25851 0.94560 1.03798 0.94784 1.70045 1.42666 1.38251 1.05755 0.85475 0.78507 0.78926 0.77955 1.18374 1.20283 1.20344 1.19036 0.81881 0.78281 0.89329 1.90736 1.54113 1.59227 1.44146 1.23165 0.98309 1.02312 0.96259 1.22299 0.95569 0.92468 0.95489 1.19331 0.94384 0.97935 0.93126 1.22674 1.01611 1.00036 0.92997 1.23115 0.92462 0.93851 0.97508 1.67622 1.04390 1.15570 1.33476 1.22984 1.00006 0.96180 0.87361 1.21373 0.94681 0.98331 0.98032 1.20868 0.97608 1.04150 0.94909 0.86548 0.88244 0.86852 0.90256 0.87323 0.95870 0.98511 0.92350 0.81920 0.85628 0.82332 0.79860 0.80301 0.89953 0.91779 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 14.32 67.78 0.97 -2.92 16 2 C -0.18 -4.83 9.85 25.65 0.25 -4.57 16 3 C 0.13 4.02 5.56 85.63 0.48 4.50 16 4 N -0.59 -25.33 2.44 -835.28 -2.04 -27.37 16 5 C 0.26 14.42 5.16 85.63 0.44 14.87 16 6 C -0.55 -31.68 9.39 25.60 0.24 -31.44 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.54 5.46 84.66 0.46 1.00 16 9 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 10 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 11 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 14 C 0.52 22.33 7.61 86.44 0.66 22.99 16 15 O -0.60 -31.66 15.81 -4.23 -0.07 -31.73 16 16 C -0.18 -5.29 8.63 23.64 0.20 -5.09 16 17 C -0.04 -1.05 8.94 23.86 0.21 -0.83 16 18 C -0.04 -0.88 5.90 -19.94 -0.12 -1.00 16 19 C -0.15 -2.78 9.49 22.68 0.22 -2.57 16 20 C 0.09 1.49 11.17 84.62 0.95 2.43 16 21 N -0.50 -10.25 10.34 -196.14 -2.03 -12.27 16 22 C 0.09 1.66 10.85 84.64 0.92 2.58 16 23 C -0.12 -2.40 5.94 -19.46 -0.12 -2.52 16 24 C -0.12 -1.93 9.59 71.24 0.68 -1.25 16 25 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 26 H 0.10 2.30 7.84 -2.91 -0.02 2.28 16 27 H 0.11 2.78 8.06 -2.91 -0.02 2.76 16 28 H 0.08 2.58 7.72 -2.39 -0.02 2.56 16 29 H 0.11 2.56 6.09 -2.38 -0.01 2.54 16 30 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 31 H 0.00 -0.20 7.42 -2.39 -0.02 -0.22 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.16 3.48 4.32 -2.91 -0.01 3.47 16 34 H 0.13 3.82 5.96 -2.91 -0.02 3.81 16 35 H 0.16 2.13 6.30 -2.91 -0.02 2.11 16 36 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.22 6.45 -2.39 -0.02 1.20 16 40 H 0.09 1.09 8.10 -2.39 -0.02 1.07 16 Total: -1.00 -76.52 345.36 5.66 -70.86 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.04 Total: 13.49 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 6.45 Total: -3.84 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -3.78 Total: -95.73 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.07 Total: -31.73 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -76.52 5.66 -70.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493586962.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.652 kcal (2) G-P(sol) polarization free energy of solvation -76.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds