Wall clock time and date at job start Tue Mar 31 2020 05:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47279 * 2 1 4 4 N 1.46505 * 109.47183 * 184.98423 * 3 2 1 5 5 C 1.38151 * 125.60763 * 94.49756 * 4 3 2 6 6 C 1.46895 * 125.44477 * 359.95638 * 5 4 3 7 7 O 1.21707 * 119.99613 * 353.10465 * 6 5 4 8 8 N 1.34778 * 120.00627 * 173.10034 * 6 5 4 9 9 C 1.46500 * 119.99548 * 4.39969 * 8 6 5 10 10 C 1.36802 * 120.00177 * 184.39055 * 8 6 5 11 11 H 1.07995 * 120.00488 * 22.54621 * 10 8 6 12 12 C 1.39063 * 119.99975 * 202.53747 * 10 8 6 13 13 N 1.31361 * 119.99712 * 15.85940 * 12 10 8 14 14 Si 1.86805 * 120.00269 * 195.85137 * 12 10 8 15 15 H 1.48503 * 109.46591 * 90.00487 * 14 12 10 16 16 H 1.48499 * 109.47142 * 210.00300 * 14 12 10 17 17 H 1.48500 * 109.46876 * 330.00750 * 14 12 10 18 18 C 1.36008 * 109.12019 * 179.97438 * 5 4 3 19 19 C 1.41551 * 107.72245 * 0.02562 * 18 5 4 20 20 C 1.40119 * 133.36762 * 180.02562 * 19 18 5 21 21 C 1.36446 * 119.82634 * 179.31414 * 20 19 18 22 22 C 1.38937 * 120.61665 * 0.54651 * 21 20 19 23 23 C 1.37698 * 120.64688 * 359.63730 * 22 21 20 24 24 C 1.37526 * 125.60821 * 274.18358 * 4 3 2 25 25 H 1.09001 * 109.47220 * 175.02204 * 1 2 3 26 26 H 1.09003 * 109.46804 * 295.01602 * 1 2 3 27 27 H 1.08993 * 109.46707 * 55.02107 * 1 2 3 28 28 H 1.08999 * 109.47165 * 120.00632 * 2 1 3 29 29 H 1.09003 * 109.46827 * 239.99516 * 2 1 3 30 30 H 1.09003 * 109.47456 * 304.98724 * 3 2 1 31 31 H 1.08998 * 109.47155 * 64.98388 * 3 2 1 32 32 H 1.08998 * 109.47739 * 64.08131 * 9 8 6 33 33 H 1.08998 * 109.47245 * 184.08306 * 9 8 6 34 34 H 1.09000 * 109.46898 * 304.07833 * 9 8 6 35 35 H 0.97004 * 119.99903 * 180.02562 * 13 12 10 36 36 H 1.07995 * 126.14494 * 180.02562 * 18 5 4 37 37 H 1.07996 * 120.08890 * 359.95672 * 20 19 18 38 38 H 1.08007 * 119.69357 * 180.18900 * 21 20 19 39 39 H 1.07997 * 119.67387 * 179.66350 * 22 21 20 40 40 H 1.07997 * 120.09255 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5002 1.4441 -0.1200 5 6 4.2102 1.5655 -1.2988 6 6 3.6215 1.7131 -2.6366 7 8 2.4181 1.6103 -2.7865 8 7 4.4139 1.9623 -3.6979 9 6 5.8695 1.9905 -3.5346 10 6 3.8590 2.1888 -4.9277 11 1 2.8364 2.5274 -5.0046 12 6 4.6118 1.9832 -6.0787 13 7 5.7249 1.2882 -6.0200 14 14 4.0399 2.6950 -7.7084 15 1 4.6070 4.0567 -7.8799 16 1 4.5013 1.8232 -8.8185 17 1 2.5569 2.7710 -7.7221 18 6 5.5415 1.5262 -1.0231 19 6 5.6873 1.3742 0.3766 20 6 6.7996 1.2754 1.2230 21 6 6.6187 1.1457 2.5692 22 6 5.3397 1.0991 3.1100 23 6 4.2308 1.1903 2.2987 24 6 4.3895 1.3312 0.9230 25 1 -0.3634 -1.0238 -0.0892 26 1 -0.3633 0.4346 0.9313 27 1 -0.3632 0.5891 -0.8420 28 1 1.8934 -0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.6056 1.9814 -0.8419 31 1 1.7515 1.9298 0.9312 32 1 6.2215 1.0016 -3.2408 33 1 6.3355 2.2766 -4.4775 34 1 6.1347 2.7143 -2.7640 35 1 6.2502 1.1451 -6.8229 36 1 6.3434 1.5980 -1.7429 37 1 7.7977 1.3123 0.8120 38 1 7.4776 1.0728 3.2199 39 1 5.2141 0.9906 4.1771 40 1 3.2408 1.1526 2.7285 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190701607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:28 Heat of formation + Delta-G solvation = 48.023845 kcal Electronic energy + Delta-G solvation = -22718.808284 eV Core-core repulsion = 19500.076413 eV Total energy + Delta-G solvation = -3218.731871 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19644 -38.34895 -36.66816 -35.03159 -34.41947 -32.12138 -31.38369 -29.49724 -28.82002 -26.72700 -25.40844 -25.08495 -22.78965 -21.83203 -20.99272 -20.28041 -19.06699 -17.24491 -16.55257 -16.01501 -15.84767 -15.08936 -14.89465 -14.68034 -14.15693 -13.98025 -13.75228 -13.66315 -13.41842 -12.98647 -12.89438 -12.40642 -11.95679 -11.91034 -11.78656 -11.51177 -11.41761 -11.34499 -11.24913 -10.76704 -10.69952 -10.57984 -10.47548 -10.43500 -10.05793 -9.38205 -9.06183 -8.56925 -7.86286 -7.72362 -7.24862 -6.48544 -4.01124 1.25409 1.94710 2.72868 3.08377 3.13684 3.18363 3.24351 4.02148 4.16945 4.30372 4.74404 4.96794 4.99679 5.02595 5.15879 5.22869 5.32828 5.42659 5.45366 5.58545 5.72606 5.75666 5.82574 5.93639 6.03340 6.07750 6.17526 6.27181 6.36611 6.38817 6.40461 6.46014 6.63703 6.73365 6.89073 7.11517 7.13399 7.21708 7.42860 7.55322 7.71289 7.99850 8.34781 9.00064 9.22400 9.82347 10.50725 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.018402 B = 0.005231 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.246888 B = 5351.292627 C = 6684.315024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.453 5.453 5 C 0.073 3.927 6 C 0.487 3.513 7 O -0.593 6.593 8 N -0.412 5.412 9 C 0.068 3.932 10 C -0.298 4.298 11 H 0.104 0.896 12 C 0.029 3.971 13 N -0.865 5.865 14 Si 0.932 3.068 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.205 4.205 19 C -0.107 4.107 20 C -0.070 4.070 21 C -0.157 4.157 22 C -0.110 4.110 23 C -0.127 4.127 24 C 0.094 3.906 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.041 0.959 35 H 0.272 0.728 36 H 0.175 0.825 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -0.034 12.582 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C -0.012 4.012 4 N -0.134 5.134 5 C -0.038 4.038 6 C 0.276 3.724 7 O -0.480 6.480 8 N -0.127 5.127 9 C -0.076 4.076 10 C -0.426 4.426 11 H 0.122 0.878 12 C -0.175 4.175 13 N -0.504 5.504 14 Si 0.758 3.242 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.230 4.230 19 C -0.112 4.112 20 C -0.089 4.089 21 C -0.176 4.176 22 C -0.129 4.129 23 C -0.148 4.148 24 C -0.015 4.015 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.192 0.808 37 H 0.137 0.863 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.423 -0.131 12.287 12.295 hybrid contribution -0.075 0.121 -0.653 0.668 sum -0.498 -0.010 11.634 11.645 Atomic orbital electron populations 1.21648 0.94850 1.01953 1.01795 1.21795 0.96381 0.96340 1.02579 1.21989 0.76779 0.98550 1.03922 1.44078 1.05612 1.59695 1.03983 1.20452 0.90823 1.04904 0.87610 1.16963 0.86950 0.85596 0.82872 1.90592 1.14279 1.57834 1.85311 1.43286 1.05600 1.56889 1.06900 1.22508 0.82084 0.99221 1.03747 1.19770 1.00113 1.41695 0.80989 0.87833 1.25430 0.96291 0.95751 1.00015 1.69906 1.15209 1.35134 1.30143 0.85826 0.79463 0.78718 0.80189 1.20063 1.20721 1.19152 1.22203 0.95907 1.10224 0.94689 1.18341 0.92279 1.06548 0.94025 1.20340 0.97103 0.98697 0.92753 1.20484 0.96756 1.05443 0.94906 1.20678 0.92018 1.01566 0.98680 1.19956 0.98896 1.06168 0.89730 1.18398 0.89270 1.04303 0.89521 0.92531 0.93062 0.91866 0.92413 0.90837 0.86810 0.90941 0.93016 0.86946 0.94099 0.91717 0.80819 0.86296 0.86647 0.86416 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.91 37.16 0.37 -1.49 16 2 C -0.13 -2.07 6.26 -26.73 -0.17 -2.23 16 3 C 0.11 1.84 5.54 -4.05 -0.02 1.82 16 4 N -0.45 -8.74 2.82 -110.37 -0.31 -9.05 16 5 C 0.07 1.58 6.76 -82.31 -0.56 1.02 16 6 C 0.49 12.26 7.58 -12.76 -0.10 12.16 16 7 O -0.59 -16.05 14.28 5.18 0.07 -15.97 16 8 N -0.41 -10.54 3.01 -123.62 -0.37 -10.91 16 9 C 0.07 1.50 7.45 59.85 0.45 1.94 16 10 C -0.30 -8.04 9.25 -15.03 -0.14 -8.18 16 11 H 0.10 2.90 7.47 -52.49 -0.39 2.51 16 12 C 0.03 0.74 5.01 -17.45 -0.09 0.66 16 13 N -0.87 -22.10 10.61 55.50 0.59 -21.51 16 14 Si 0.93 19.79 29.58 -169.99 -5.03 14.77 16 15 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 18 C -0.20 -4.01 8.75 -39.12 -0.34 -4.36 16 19 C -0.11 -1.92 6.16 -106.93 -0.66 -2.58 16 20 C -0.07 -1.05 10.06 -39.52 -0.40 -1.44 16 21 C -0.16 -2.05 9.97 -39.97 -0.40 -2.45 16 22 C -0.11 -1.42 10.02 -39.52 -0.40 -1.82 16 23 C -0.13 -1.87 10.00 -39.42 -0.39 -2.26 16 24 C 0.09 1.67 6.81 -83.95 -0.57 1.10 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.11 2.20 6.15 -51.93 -0.32 1.88 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.12 6.81 -51.93 -0.35 0.76 16 33 H 0.11 2.64 5.31 -51.93 -0.28 2.36 16 34 H 0.04 0.80 6.09 -51.93 -0.32 0.49 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 36 H 0.17 3.19 3.89 -52.49 -0.20 2.99 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -29.68 326.24 -8.77 -38.45 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.22 Total: 7.42 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -3.41 Total: -8.11 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.09 Total: -41.47 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.07 Total: -15.97 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.68 -8.77 -38.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190701607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.469 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds