Wall clock time and date at job start Tue Mar 31 2020 07:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.50181 * 2 1 4 4 C 1.53036 * 109.50746 * 239.88413 * 2 1 3 5 5 N 1.46844 * 109.52543 * 180.87784 * 4 2 1 6 6 C 1.46900 * 111.00069 * 185.83589 * 5 4 2 7 7 C 1.46849 * 111.19644 * 61.73693 * 5 4 2 8 8 C 1.53037 * 109.52739 * 298.25923 * 7 5 4 9 9 C 1.53115 * 109.27771 * 59.17936 * 8 7 5 10 10 H 1.09005 * 109.57628 * 62.28238 * 9 8 7 11 11 N 1.46495 * 109.52422 * 182.44132 * 9 8 7 12 12 C 1.46506 * 120.00081 * 59.68267 * 11 9 8 13 13 C 1.34773 * 120.00357 * 239.68225 * 11 9 8 14 14 O 1.21287 * 120.00030 * 0.02562 * 13 11 9 15 15 C 1.50704 * 120.00266 * 179.97438 * 13 11 9 16 16 S 1.80996 * 109.47087 * 180.02562 * 15 13 11 17 17 C 1.76199 * 99.99917 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00415 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99716 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00435 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99769 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 60.00524 * 21 19 17 23 23 H 1.48503 * 109.47399 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47295 * 300.00621 * 21 19 17 25 25 H 1.08996 * 109.47200 * 299.91989 * 1 2 3 26 26 H 1.08996 * 109.47128 * 59.92771 * 1 2 3 27 27 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.45667 * 300.89203 * 4 2 1 29 29 H 1.08995 * 109.46266 * 60.85647 * 4 2 1 30 30 H 1.08992 * 109.46930 * 59.99913 * 6 5 4 31 31 H 1.08996 * 109.46913 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.46628 * 299.99836 * 6 5 4 33 33 H 1.09004 * 109.46503 * 58.27664 * 7 5 4 34 34 H 1.09000 * 109.46304 * 178.24120 * 7 5 4 35 35 H 1.08998 * 109.50103 * 299.23776 * 8 7 5 36 36 H 1.08997 * 109.50459 * 179.12153 * 8 7 5 37 37 H 1.08998 * 109.47151 * 270.00695 * 12 11 9 38 38 H 1.09003 * 109.46747 * 29.99774 * 12 11 9 39 39 H 1.09003 * 109.47193 * 149.99740 * 12 11 9 40 40 H 1.09001 * 109.46841 * 60.00041 * 15 13 11 41 41 H 1.08996 * 109.46854 * 300.00149 * 15 13 11 42 42 H 0.97000 * 119.99818 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7238 -1.2478 5 7 3.5093 -0.7424 -1.2376 6 6 4.0374 -1.3066 -2.4869 7 6 4.0230 -1.4728 -0.0718 8 6 3.5712 -0.7713 1.2111 9 6 2.0412 -0.7233 1.2490 10 1 1.6444 -1.7383 1.2702 11 7 1.6036 -0.0015 2.4464 12 6 2.0116 1.3904 2.6526 13 6 0.8257 -0.6178 3.3582 14 8 0.4883 -1.7703 3.1877 15 6 0.3760 0.1246 4.5902 16 16 -0.6467 -0.9649 5.6114 17 6 -1.0228 0.1271 6.9421 18 1 -0.6370 1.1357 6.9384 19 6 -1.8158 -0.3088 7.9945 20 7 -2.2865 -1.5381 7.9989 21 14 -2.2139 0.8486 9.4056 22 1 -2.9338 2.0376 8.8825 23 1 -3.0703 0.1467 10.3952 24 1 -0.9538 1.2817 10.0612 25 1 -0.3633 0.5126 0.8907 26 1 -0.3633 0.5149 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6649 -1.7468 -1.2537 29 1 1.6906 -0.2030 -2.1388 30 1 3.7013 -0.7019 -3.3292 31 1 5.1268 -1.3081 -2.4529 32 1 3.6757 -2.3280 -2.6057 33 1 3.6376 -2.4924 -0.0832 34 1 5.1121 -1.4960 -0.1088 35 1 3.9678 0.2438 1.2298 36 1 3.9395 -1.3225 2.0763 37 1 2.9519 1.4157 3.2033 38 1 2.1433 1.8774 1.6864 39 1 1.2431 1.9138 3.2215 40 1 -0.2052 0.9985 4.2958 41 1 1.2482 0.4436 5.1607 42 1 -2.0789 -2.1395 7.2667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247216412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:41 Heat of formation + Delta-G solvation = -41.206336 kcal Electronic energy + Delta-G solvation = -21173.653357 eV Core-core repulsion = 18086.496126 eV Total energy + Delta-G solvation = -3087.157231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.35388 -38.54784 -35.70689 -33.38903 -32.52229 -32.02052 -29.27613 -27.21864 -27.04210 -25.82870 -24.80238 -23.01297 -21.84620 -19.95681 -19.19467 -18.18752 -16.85552 -16.30088 -15.83546 -15.37740 -15.33165 -14.74385 -14.51789 -14.22235 -13.84206 -13.47971 -13.20253 -13.18422 -12.72757 -12.65518 -12.63596 -12.42071 -12.23078 -12.08129 -12.03548 -11.88871 -11.69333 -11.34330 -10.95383 -10.91794 -10.76419 -10.57339 -10.17262 -9.55356 -9.41110 -9.00943 -8.64545 -8.50685 -8.20992 -6.66535 -6.61730 -3.99376 2.84266 2.98054 3.33363 3.38041 3.46877 3.58203 3.62154 4.24995 4.43094 4.59209 4.72453 4.83570 4.92186 5.02142 5.09926 5.15735 5.18222 5.22689 5.23921 5.30154 5.39113 5.43150 5.49871 5.51249 5.54313 5.56937 5.68503 5.71053 5.76036 5.82057 5.90193 5.97708 6.02781 6.12402 6.25469 6.64007 6.76010 6.77050 7.50955 7.92172 8.49601 8.50654 9.27696 10.82245 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.041420 B = 0.003314 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.836312 B = 8446.531262 C = 8486.867027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.081 0.919 4 C 0.063 3.937 5 N -0.545 5.545 6 C 0.025 3.975 7 C 0.058 3.942 8 C -0.125 4.125 9 C 0.145 3.855 10 H 0.098 0.902 11 N -0.615 5.615 12 C 0.078 3.922 13 C 0.533 3.467 14 O -0.519 6.519 15 C -0.127 4.127 16 S -0.118 6.118 17 C -0.607 4.607 18 H 0.065 0.935 19 C 0.035 3.965 20 N -0.884 5.884 21 Si 1.084 2.916 22 H -0.285 1.285 23 H -0.278 1.278 24 H -0.285 1.285 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.025 0.975 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.628 5.417 -19.278 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.100 0.900 4 C -0.065 4.065 5 N -0.269 5.269 6 C -0.123 4.123 7 C -0.070 4.070 8 C -0.163 4.163 9 C 0.041 3.959 10 H 0.116 0.884 11 N -0.350 5.350 12 C -0.066 4.066 13 C 0.321 3.679 14 O -0.393 6.393 15 C -0.278 4.278 16 S 0.108 5.892 17 C -0.755 4.755 18 H 0.083 0.917 19 C -0.175 4.175 20 N -0.518 5.518 21 Si 0.910 3.090 22 H -0.211 1.211 23 H -0.203 1.203 24 H -0.211 1.211 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.469 4.276 -18.052 21.810 hybrid contribution 1.065 0.709 -1.266 1.800 sum 12.534 4.985 -19.317 23.561 Atomic orbital electron populations 1.21738 0.94203 1.02376 1.01845 1.21492 0.96078 1.00495 0.93516 0.90044 1.22125 0.86853 0.99274 0.98264 1.61946 1.08291 1.54167 1.02536 1.22340 1.00504 0.97605 0.91847 1.22063 0.99960 0.95159 0.89832 1.21937 0.95405 1.02026 0.96981 1.21096 0.93667 0.97513 0.83641 0.88402 1.47813 1.51963 1.13383 1.21796 1.21761 1.00631 0.82055 1.02107 1.20308 0.77185 0.86898 0.83553 1.90680 1.54937 1.17171 1.76540 1.23342 1.04011 1.03399 0.97030 1.84811 1.62744 1.19594 1.22048 1.23694 1.41426 1.01248 1.09108 0.91656 1.26054 0.92752 0.98803 0.99927 1.70798 1.41449 1.05582 1.34012 0.83335 0.76606 0.74264 0.74819 1.21136 1.20282 1.21138 0.92119 0.92673 0.92495 0.94540 0.90446 0.91351 0.91358 0.95640 0.94577 0.90424 0.90706 0.90936 0.92722 0.91050 0.90792 0.89053 0.89062 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.07 37.16 0.34 -1.31 16 2 C -0.10 -1.02 2.28 -90.54 -0.21 -1.22 16 3 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16 4 C 0.06 0.60 4.75 -3.84 -0.02 0.58 16 5 N -0.55 -5.01 4.91 -242.97 -1.19 -6.20 16 6 C 0.03 0.18 9.59 60.06 0.58 0.76 16 7 C 0.06 0.55 5.46 -3.83 -0.02 0.53 16 8 C -0.12 -1.32 5.41 -26.65 -0.14 -1.47 16 9 C 0.14 1.82 2.01 -67.81 -0.14 1.69 16 10 H 0.10 1.51 6.90 -51.93 -0.36 1.15 16 11 N -0.61 -8.69 2.12 -173.79 -0.37 -9.05 16 12 C 0.08 0.84 9.25 59.85 0.55 1.39 16 13 C 0.53 10.14 7.69 -10.99 -0.08 10.05 16 14 O -0.52 -11.81 15.19 5.55 0.08 -11.72 16 15 C -0.13 -2.61 4.71 36.01 0.17 -2.44 16 16 S -0.12 -3.22 19.60 -107.50 -2.11 -5.33 16 17 C -0.61 -17.59 9.50 30.94 0.29 -17.29 16 18 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 19 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 20 N -0.88 -27.69 13.67 55.49 0.76 -26.93 16 21 Si 1.08 25.02 29.92 -169.99 -5.09 19.93 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.06 0.80 7.68 -51.93 -0.40 0.40 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 35 H 0.07 0.75 7.59 -51.93 -0.39 0.35 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.63 6.39 -51.93 -0.33 0.30 16 39 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 40 H 0.09 1.75 7.40 -51.92 -0.38 1.37 16 41 H 0.09 1.77 8.11 -51.92 -0.42 1.34 16 42 H 0.28 8.89 7.13 -40.82 -0.29 8.59 16 LS Contribution 343.39 15.07 5.17 5.17 Total: -1.00 -34.05 343.39 -8.62 -42.67 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.10 Total: -0.73 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 1.22 Total: -7.81 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.80 Total: -42.19 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.72 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.11 Total: -5.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.05 -8.62 -42.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247216412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.460 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds