Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.50181 * 2 1 4 4 C 1.53036 * 109.50746 * 239.88413 * 2 1 3 5 5 N 1.46844 * 109.52543 * 180.87784 * 4 2 1 6 6 C 1.46900 * 111.00069 * 185.83589 * 5 4 2 7 7 C 1.46849 * 111.19644 * 61.73693 * 5 4 2 8 8 C 1.53037 * 109.52739 * 298.25923 * 7 5 4 9 9 C 1.53115 * 109.27771 * 59.17936 * 8 7 5 10 10 H 1.09005 * 109.57628 * 62.28238 * 9 8 7 11 11 N 1.46495 * 109.52422 * 182.44132 * 9 8 7 12 12 C 1.46506 * 120.00081 * 59.68267 * 11 9 8 13 13 C 1.34773 * 120.00357 * 239.68225 * 11 9 8 14 14 O 1.21287 * 120.00030 * 0.02562 * 13 11 9 15 15 C 1.50704 * 120.00266 * 179.97438 * 13 11 9 16 16 S 1.80996 * 109.47087 * 180.02562 * 15 13 11 17 17 C 1.76199 * 99.99917 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00415 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99716 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00435 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99769 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46845 * 60.00524 * 21 19 17 23 23 H 1.48503 * 109.47399 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47295 * 300.00621 * 21 19 17 25 25 H 1.08996 * 109.47200 * 299.91989 * 1 2 3 26 26 H 1.08996 * 109.47128 * 59.92771 * 1 2 3 27 27 H 1.09001 * 109.46804 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.45667 * 300.89203 * 4 2 1 29 29 H 1.08995 * 109.46266 * 60.85647 * 4 2 1 30 30 H 1.08992 * 109.46930 * 59.99913 * 6 5 4 31 31 H 1.08996 * 109.46913 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.46628 * 299.99836 * 6 5 4 33 33 H 1.09004 * 109.46503 * 58.27664 * 7 5 4 34 34 H 1.09000 * 109.46304 * 178.24120 * 7 5 4 35 35 H 1.08998 * 109.50103 * 299.23776 * 8 7 5 36 36 H 1.08997 * 109.50459 * 179.12153 * 8 7 5 37 37 H 1.08998 * 109.47151 * 270.00695 * 12 11 9 38 38 H 1.09003 * 109.46747 * 29.99774 * 12 11 9 39 39 H 1.09003 * 109.47193 * 149.99740 * 12 11 9 40 40 H 1.09001 * 109.46841 * 60.00041 * 15 13 11 41 41 H 1.08996 * 109.46854 * 300.00149 * 15 13 11 42 42 H 0.97000 * 119.99818 * 0.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7238 -1.2478 5 7 3.5093 -0.7424 -1.2376 6 6 4.0374 -1.3066 -2.4869 7 6 4.0230 -1.4728 -0.0718 8 6 3.5712 -0.7713 1.2111 9 6 2.0412 -0.7233 1.2490 10 1 1.6444 -1.7383 1.2702 11 7 1.6036 -0.0015 2.4464 12 6 2.0116 1.3904 2.6526 13 6 0.8257 -0.6178 3.3582 14 8 0.4883 -1.7703 3.1877 15 6 0.3760 0.1246 4.5902 16 16 -0.6467 -0.9649 5.6114 17 6 -1.0228 0.1271 6.9421 18 1 -0.6370 1.1357 6.9384 19 6 -1.8158 -0.3088 7.9945 20 7 -2.2865 -1.5381 7.9989 21 14 -2.2139 0.8486 9.4056 22 1 -2.9338 2.0376 8.8825 23 1 -3.0703 0.1467 10.3952 24 1 -0.9538 1.2817 10.0612 25 1 -0.3633 0.5126 0.8907 26 1 -0.3633 0.5149 -0.8893 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6649 -1.7468 -1.2537 29 1 1.6906 -0.2030 -2.1388 30 1 3.7013 -0.7019 -3.3292 31 1 5.1268 -1.3081 -2.4529 32 1 3.6757 -2.3280 -2.6057 33 1 3.6376 -2.4924 -0.0832 34 1 5.1121 -1.4960 -0.1088 35 1 3.9678 0.2438 1.2298 36 1 3.9395 -1.3225 2.0763 37 1 2.9519 1.4157 3.2033 38 1 2.1433 1.8774 1.6864 39 1 1.2431 1.9138 3.2215 40 1 -0.2052 0.9985 4.2958 41 1 1.2482 0.4436 5.1607 42 1 -2.0789 -2.1395 7.2667 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000247216412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = -64.040489 kcal Electronic energy + Delta-G solvation = -21174.643520 eV Core-core repulsion = 18086.496126 eV Total energy + Delta-G solvation = -3088.147394 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 286.146 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.50289 -39.67810 -36.85206 -34.75427 -34.38512 -32.94272 -30.75734 -28.13193 -27.90065 -27.19465 -26.62731 -23.91462 -22.67932 -21.15384 -20.46361 -20.07627 -18.23955 -17.51858 -17.00526 -16.64768 -16.27595 -16.03735 -15.70128 -15.48986 -15.30522 -14.81619 -14.49019 -14.42218 -14.21102 -13.81372 -13.66869 -13.57461 -13.44357 -13.36478 -13.15714 -12.89148 -12.73798 -12.45616 -12.20052 -11.95698 -11.84771 -11.67021 -11.58297 -11.47701 -11.10060 -10.93516 -10.32862 -9.68588 -9.37025 -8.93330 -8.88795 -6.28708 1.16739 1.47713 1.51498 1.60551 1.80671 2.01093 2.33863 2.90692 3.01755 3.09276 3.46398 3.70994 3.75862 3.87728 4.04525 4.08182 4.19111 4.28182 4.32459 4.37551 4.43564 4.50593 4.51479 4.59915 4.64047 4.71264 4.76212 4.84109 4.87395 4.92126 5.02899 5.03566 5.08043 5.17307 5.31928 5.54212 5.63276 6.02591 6.05558 6.13744 6.22895 7.05073 7.06739 8.50118 Molecular weight = 286.15amu Principal moments of inertia in cm(-1) A = 0.041420 B = 0.003314 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.836312 B = 8446.531262 C = 8486.867027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.098 0.902 4 C 0.066 3.934 5 N -0.547 5.547 6 C 0.024 3.976 7 C 0.060 3.940 8 C -0.117 4.117 9 C 0.142 3.858 10 H 0.062 0.938 11 N -0.599 5.599 12 C 0.068 3.932 13 C 0.531 3.469 14 O -0.568 6.568 15 C -0.102 4.102 16 S -0.199 6.199 17 C -0.612 4.612 18 H 0.075 0.925 19 C -0.019 4.019 20 N -0.914 5.914 21 Si 1.137 2.863 22 H -0.262 1.262 23 H -0.280 1.280 24 H -0.263 1.263 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.034 0.966 28 H 0.023 0.977 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.384 8.388 -20.464 26.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 H 0.116 0.884 4 C -0.062 4.062 5 N -0.271 5.271 6 C -0.124 4.124 7 C -0.068 4.068 8 C -0.155 4.155 9 C 0.038 3.962 10 H 0.080 0.920 11 N -0.331 5.331 12 C -0.074 4.074 13 C 0.318 3.682 14 O -0.447 6.447 15 C -0.253 4.253 16 S 0.028 5.972 17 C -0.760 4.760 18 H 0.094 0.906 19 C -0.222 4.222 20 N -0.549 5.549 21 Si 0.954 3.046 22 H -0.187 1.187 23 H -0.206 1.206 24 H -0.187 1.187 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.276 7.286 -19.296 24.529 hybrid contribution 0.610 -0.193 -1.047 1.227 sum 13.886 7.093 -20.343 25.631 Atomic orbital electron populations 1.21707 0.95053 1.01055 1.02053 1.21432 0.95241 1.01083 0.92809 0.88372 1.22099 0.87347 0.98611 0.98191 1.61990 1.07801 1.54184 1.03139 1.22416 1.01194 0.97580 0.91186 1.22054 1.00953 0.94337 0.89476 1.21869 0.93360 1.02938 0.97373 1.21234 0.95191 0.95946 0.83804 0.91965 1.47811 1.49843 1.14640 1.20831 1.22090 1.01360 0.79728 1.04179 1.20085 0.77910 0.86268 0.83926 1.90667 1.57259 1.19182 1.77596 1.23225 1.03307 1.02126 0.96685 1.85072 1.65076 1.23069 1.23959 1.24023 1.41083 1.01596 1.09295 0.90639 1.27864 0.92122 0.99387 1.02867 1.70918 1.43333 1.06765 1.33867 0.82721 0.77529 0.72744 0.71588 1.18699 1.20558 1.18726 0.93977 0.90287 0.94646 0.95883 0.88631 0.90175 0.90208 0.95931 0.95848 0.88611 0.89076 0.92061 0.90959 0.88213 0.90653 0.87281 0.87388 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 9.07 71.98 0.65 -2.46 16 2 C -0.09 -1.66 2.28 -10.74 -0.02 -1.69 16 3 H 0.10 1.62 6.58 -2.39 -0.02 1.60 16 4 C 0.07 1.12 4.75 86.33 0.41 1.53 16 5 N -0.55 -8.63 4.91 -922.61 -4.53 -13.16 16 6 C 0.02 0.28 9.59 127.69 1.22 1.51 16 7 C 0.06 1.02 5.46 86.33 0.47 1.50 16 8 C -0.12 -2.28 5.41 30.65 0.17 -2.11 16 9 C 0.14 3.48 2.01 45.07 0.09 3.57 16 10 H 0.06 2.01 6.90 -2.38 -0.02 2.00 16 11 N -0.60 -16.30 2.12 -822.13 -1.74 -18.04 16 12 C 0.07 1.26 9.25 127.77 1.18 2.44 16 13 C 0.53 20.43 7.69 87.66 0.67 21.11 16 14 O -0.57 -27.16 15.19 -3.05 -0.05 -27.20 16 15 C -0.10 -4.18 4.71 71.24 0.34 -3.84 16 16 S -0.20 -11.15 19.60 -56.49 -1.11 -12.26 16 17 C -0.61 -35.66 9.50 67.96 0.65 -35.02 16 18 H 0.08 4.10 7.80 -2.91 -0.02 4.08 16 19 C -0.02 -1.14 5.49 84.86 0.47 -0.67 16 20 N -0.91 -58.69 13.67 21.65 0.30 -58.39 16 21 Si 1.14 49.47 29.92 68.60 2.05 51.52 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H 0.04 1.08 7.68 -2.39 -0.02 1.06 16 26 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 1.31 8.12 -2.39 -0.02 1.29 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 32 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 33 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.10 1.31 8.09 -2.39 -0.02 1.29 16 35 H 0.09 1.50 7.59 -2.39 -0.02 1.49 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.33 6.39 -2.39 -0.02 1.31 16 39 H 0.07 1.41 6.44 -2.39 -0.02 1.40 16 40 H 0.11 4.06 7.40 -2.39 -0.02 4.04 16 41 H 0.11 4.04 8.11 -2.40 -0.02 4.02 16 42 H 0.26 17.40 7.13 -92.71 -0.66 16.74 16 Total: -1.00 -77.22 343.39 2.30 -74.92 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 1.09 Total: 16.76 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 6.29 Total: -14.15 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -5.98 Total: -89.59 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.20 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Atomic # 16 Polarization: -11.15 SS G_CDS: -1.11 Total: -12.26 kcal Total: -77.22 2.30 -74.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247216412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.877 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds