Wall clock time and date at job start Tue Mar 31 2020 07:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47051 * 2 1 4 4 C 1.52999 * 109.47163 * 240.00277 * 2 1 3 5 5 C 1.50707 * 109.47389 * 64.99755 * 4 2 1 6 6 O 1.21280 * 119.99568 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99872 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99639 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46905 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00069 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99855 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00020 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00045 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47053 * 90.00120 * 13 11 9 15 15 H 1.48501 * 109.46985 * 209.99781 * 13 11 9 16 16 H 1.48503 * 109.47103 * 330.00259 * 13 11 9 17 17 C 1.50695 * 109.47412 * 119.99706 * 2 1 3 18 18 C 1.34241 * 126.49588 * 59.97908 * 17 2 1 19 19 N 1.36833 * 109.93022 * 180.02562 * 18 17 2 20 20 H 0.97000 * 125.06652 * 179.97438 * 19 18 17 21 21 C 1.37688 * 109.87243 * 0.02562 * 19 18 17 22 22 C 1.39129 * 133.50461 * 179.71370 * 21 19 18 23 23 C 1.37746 * 119.77704 * 179.87274 * 22 21 19 24 24 C 1.38833 * 120.66487 * 0.46272 * 23 22 21 25 25 C 1.36628 * 120.53172 * 359.74671 * 24 23 22 26 26 C 1.39629 * 119.76327 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46944 * 300.00047 * 1 2 3 29 29 H 1.09005 * 109.46977 * 59.99538 * 1 2 3 30 30 H 1.09006 * 109.47372 * 184.99624 * 4 2 1 31 31 H 1.08999 * 109.47190 * 304.99428 * 4 2 1 32 32 H 0.96997 * 120.00219 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.46764 * 299.99410 * 8 7 5 34 34 H 1.09000 * 109.47647 * 59.99826 * 8 7 5 35 35 H 0.97001 * 119.99538 * 180.02562 * 12 11 9 36 36 H 1.08002 * 125.03847 * 0.02562 * 18 17 2 37 37 H 1.08001 * 120.10753 * 0.28870 * 22 21 19 38 38 H 1.07996 * 119.66446 * 180.25461 * 23 22 21 39 39 H 1.07999 * 119.73073 * 179.75936 * 24 23 22 40 40 H 1.07997 * 120.11646 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 8 1.0116 1.0875 -2.3633 7 7 1.9844 -0.3918 -3.7002 8 6 1.5973 0.3651 -4.8933 9 6 2.0985 -0.3461 -6.1239 10 1 2.6505 -1.2692 -6.0269 11 6 1.8522 0.1819 -7.3735 12 7 2.2900 -0.4384 -8.4474 13 14 0.8968 1.7783 -7.5413 14 1 1.8402 2.9249 -7.5159 15 1 0.1533 1.7774 -8.8268 16 1 -0.0627 1.9017 -6.4145 17 6 2.0324 -0.7103 1.2304 18 6 1.7895 -1.9859 1.5711 19 7 2.4103 -2.2788 2.7548 20 1 2.3795 -3.1388 3.2023 21 6 3.0844 -1.1706 3.2166 22 6 3.8574 -0.9215 4.3462 23 6 4.4161 0.3238 4.5318 24 6 4.2082 1.3381 3.6070 25 6 3.4490 1.1167 2.4929 26 6 2.8769 -0.1395 2.2824 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.1263 -0.7994 -1.2057 31 1 1.6054 -1.7198 -1.2952 32 1 2.4883 -1.2157 -3.7908 33 1 0.5110 0.4440 -4.9368 34 1 2.0326 1.3633 -4.8475 35 1 2.1171 -0.0667 -9.3265 36 1 1.1926 -2.6783 0.9961 37 1 4.0243 -1.7040 5.0717 38 1 5.0193 0.5139 5.4073 39 1 4.6503 2.3100 3.7696 40 1 3.2913 1.9107 1.7781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427633220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:32 Heat of formation + Delta-G solvation = 3.713918 kcal Electronic energy + Delta-G solvation = -21399.591639 eV Core-core repulsion = 18178.938345 eV Total energy + Delta-G solvation = -3220.653294 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42949 -39.09343 -37.09161 -35.20729 -34.11346 -32.33616 -31.41507 -29.50614 -28.94107 -28.11274 -26.77577 -23.19191 -22.96809 -21.97273 -21.63690 -19.81756 -18.77447 -17.98131 -17.18041 -16.51372 -15.84636 -15.54864 -15.27568 -14.97062 -14.60976 -14.19700 -14.11586 -13.90965 -13.53799 -13.37673 -12.86823 -12.79021 -12.50756 -12.19492 -12.08537 -11.80402 -11.75394 -11.30330 -11.09084 -10.95266 -10.83167 -10.69945 -10.56229 -9.95603 -9.68018 -9.47493 -9.05340 -8.75812 -8.34219 -8.08953 -7.73581 -6.20188 -4.22182 1.00801 1.51017 2.57226 2.98179 3.27188 3.32008 3.34663 3.43226 3.79684 4.07972 4.34854 4.59326 4.67250 4.87048 4.97540 5.09579 5.15181 5.17037 5.27683 5.35912 5.44957 5.52239 5.70696 5.72924 5.78289 5.82465 5.88387 6.05158 6.24989 6.30747 6.45159 6.50278 6.56160 6.64337 6.75148 6.85101 7.04430 7.10341 7.28158 7.38399 7.43197 8.16659 8.56256 8.77464 9.00185 9.40468 10.91845 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.030887 B = 0.002952 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.318953 B = 9481.790649 C = 9646.010423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.001 3.999 3 H 0.083 0.917 4 C -0.133 4.133 5 C 0.500 3.500 6 O -0.556 6.556 7 N -0.708 5.708 8 C 0.220 3.780 9 C -0.543 4.543 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.894 5.894 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.260 1.260 17 C -0.153 4.153 18 C 0.049 3.951 19 N -0.597 5.597 20 H 0.414 0.586 21 C 0.094 3.906 22 C -0.134 4.134 23 C -0.101 4.101 24 C -0.151 4.151 25 C -0.066 4.066 26 C -0.101 4.101 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.396 0.604 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.267 0.733 36 H 0.169 0.831 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -3.590 25.729 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.285 3.715 6 O -0.436 6.436 7 N -0.356 5.356 8 C 0.098 3.902 9 C -0.581 4.581 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.531 5.531 13 Si 0.704 3.296 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.185 1.185 17 C -0.160 4.160 18 C -0.076 4.076 19 N -0.200 5.200 20 H 0.250 0.750 21 C -0.013 4.013 22 C -0.155 4.155 23 C -0.120 4.120 24 C -0.170 4.170 25 C -0.085 4.085 26 C -0.106 4.106 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.229 0.771 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.077 0.923 36 H 0.186 0.814 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.191 -2.979 25.592 25.792 hybrid contribution -0.121 -0.188 -0.121 0.255 sum 1.070 -3.167 25.470 25.689 Atomic orbital electron populations 1.21955 0.94162 1.01222 1.03033 1.19171 0.95824 0.98768 0.88086 0.89821 1.21761 1.02730 0.99940 0.92891 1.20574 0.79987 0.85979 0.84944 1.90608 1.41070 1.25096 1.86845 1.46220 1.55828 1.27366 1.06207 1.19470 0.95858 0.92237 0.82683 1.21114 1.37308 1.10560 0.89096 0.90308 1.24809 0.95037 0.97378 0.95474 1.69888 1.45533 1.39512 0.98161 0.86808 0.80947 0.83784 0.78093 1.19860 1.20953 1.18472 1.20333 1.03924 0.93782 0.97973 1.21586 1.00438 0.97301 0.88320 1.41709 1.45196 1.12033 1.21037 0.74972 1.18263 0.98705 0.87554 0.96759 1.19987 1.01044 0.98128 0.96363 1.20780 0.99561 0.92422 0.99264 1.20625 1.01591 0.99402 0.95394 1.20362 0.95733 0.95216 0.97173 1.19141 1.01796 0.93892 0.95738 0.93620 0.93211 0.90084 0.89276 0.89493 0.77082 0.95771 0.96233 0.92296 0.81391 0.86546 0.86004 0.86148 0.85920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.81 37.16 0.33 -1.62 16 2 C 0.00 0.01 2.43 -91.78 -0.22 -0.21 16 3 H 0.08 1.24 7.95 -51.93 -0.41 0.83 16 4 C -0.13 -1.79 5.02 -27.88 -0.14 -1.93 16 5 C 0.50 9.25 7.55 -10.98 -0.08 9.17 16 6 O -0.56 -12.13 13.97 5.56 0.08 -12.06 16 7 N -0.71 -14.25 5.55 -61.47 -0.34 -14.59 16 8 C 0.22 5.42 4.50 -5.19 -0.02 5.39 16 9 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 10 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.89 -26.64 13.96 55.43 0.77 -25.86 16 13 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 16 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 17 C -0.15 -1.83 5.05 -102.72 -0.52 -2.35 16 18 C 0.05 0.47 11.26 -16.73 -0.19 0.28 16 19 N -0.60 -5.21 6.07 -10.65 -0.06 -5.28 16 20 H 0.41 2.27 8.96 -40.82 -0.37 1.90 16 21 C 0.09 1.03 7.28 -83.98 -0.61 0.42 16 22 C -0.13 -1.27 10.08 -39.43 -0.40 -1.66 16 23 C -0.10 -0.92 10.01 -39.54 -0.40 -1.32 16 24 C -0.15 -1.51 9.97 -39.94 -0.40 -1.91 16 25 C -0.07 -0.78 10.05 -39.64 -0.40 -1.18 16 26 C -0.10 -1.26 6.35 -105.14 -0.67 -1.93 16 27 H 0.04 0.52 8.02 -51.93 -0.42 0.10 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.30 5.95 -51.93 -0.31 0.99 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 0.98 8.13 -51.93 -0.42 0.55 16 32 H 0.40 7.03 8.32 -40.82 -0.34 6.69 16 33 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 34 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -33.32 336.25 -8.88 -42.20 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.57 Total: 5.68 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -4.15 Total: -12.03 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.37 Total: -45.73 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.32 -8.88 -42.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.911 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds