Wall clock time and date at job start Tue Mar 31 2020 07:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47051 * 2 1 4 4 C 1.52999 * 109.47163 * 240.00277 * 2 1 3 5 5 C 1.50707 * 109.47389 * 64.99755 * 4 2 1 6 6 O 1.21280 * 119.99568 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99872 * 180.02562 * 5 4 2 8 8 C 1.46501 * 119.99639 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46905 * 180.02562 * 8 7 5 10 10 H 1.07997 * 120.00069 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99855 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00020 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 120.00045 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47053 * 90.00120 * 13 11 9 15 15 H 1.48501 * 109.46985 * 209.99781 * 13 11 9 16 16 H 1.48503 * 109.47103 * 330.00259 * 13 11 9 17 17 C 1.50695 * 109.47412 * 119.99706 * 2 1 3 18 18 C 1.34241 * 126.49588 * 59.97908 * 17 2 1 19 19 N 1.36833 * 109.93022 * 180.02562 * 18 17 2 20 20 H 0.97000 * 125.06652 * 179.97438 * 19 18 17 21 21 C 1.37688 * 109.87243 * 0.02562 * 19 18 17 22 22 C 1.39129 * 133.50461 * 179.71370 * 21 19 18 23 23 C 1.37746 * 119.77704 * 179.87274 * 22 21 19 24 24 C 1.38833 * 120.66487 * 0.46272 * 23 22 21 25 25 C 1.36628 * 120.53172 * 359.74671 * 24 23 22 26 26 C 1.39629 * 119.76327 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46944 * 300.00047 * 1 2 3 29 29 H 1.09005 * 109.46977 * 59.99538 * 1 2 3 30 30 H 1.09006 * 109.47372 * 184.99624 * 4 2 1 31 31 H 1.08999 * 109.47190 * 304.99428 * 4 2 1 32 32 H 0.96997 * 120.00219 * 359.97438 * 7 5 4 33 33 H 1.08998 * 109.46764 * 299.99410 * 8 7 5 34 34 H 1.09000 * 109.47647 * 59.99826 * 8 7 5 35 35 H 0.97001 * 119.99538 * 180.02562 * 12 11 9 36 36 H 1.08002 * 125.03847 * 0.02562 * 18 17 2 37 37 H 1.08001 * 120.10753 * 0.28870 * 22 21 19 38 38 H 1.07996 * 119.66446 * 180.25461 * 23 22 21 39 39 H 1.07999 * 119.73073 * 179.75936 * 24 23 22 40 40 H 1.07997 * 120.11646 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 8 1.0116 1.0875 -2.3633 7 7 1.9844 -0.3918 -3.7002 8 6 1.5973 0.3651 -4.8933 9 6 2.0985 -0.3461 -6.1239 10 1 2.6505 -1.2692 -6.0269 11 6 1.8522 0.1819 -7.3735 12 7 2.2900 -0.4384 -8.4474 13 14 0.8968 1.7783 -7.5413 14 1 1.8402 2.9249 -7.5159 15 1 0.1533 1.7774 -8.8268 16 1 -0.0627 1.9017 -6.4145 17 6 2.0324 -0.7103 1.2304 18 6 1.7895 -1.9859 1.5711 19 7 2.4103 -2.2788 2.7548 20 1 2.3795 -3.1388 3.2023 21 6 3.0844 -1.1706 3.2166 22 6 3.8574 -0.9215 4.3462 23 6 4.4161 0.3238 4.5318 24 6 4.2082 1.3381 3.6070 25 6 3.4490 1.1167 2.4929 26 6 2.8769 -0.1395 2.2824 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 3.1263 -0.7994 -1.2057 31 1 1.6054 -1.7198 -1.2952 32 1 2.4883 -1.2157 -3.7908 33 1 0.5110 0.4440 -4.9368 34 1 2.0326 1.3633 -4.8475 35 1 2.1171 -0.0667 -9.3265 36 1 1.1926 -2.6783 0.9961 37 1 4.0243 -1.7040 5.0717 38 1 5.0193 0.5139 5.4073 39 1 4.6503 2.3100 3.7696 40 1 3.2913 1.9107 1.7781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427633220.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:31 Heat of formation + Delta-G solvation = -17.783151 kcal Electronic energy + Delta-G solvation = -21400.523822 eV Core-core repulsion = 18178.938345 eV Total energy + Delta-G solvation = -3221.585477 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 286.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.18770 -40.60324 -37.84876 -36.49318 -35.72517 -34.38224 -32.24216 -30.56845 -30.20573 -29.06261 -28.21757 -24.57142 -23.70257 -23.39448 -22.59003 -21.38456 -19.66959 -19.12162 -18.69723 -17.66741 -17.12899 -16.94720 -16.45826 -16.27816 -15.91698 -15.39327 -15.12795 -14.89477 -14.72077 -14.55681 -14.52901 -14.10866 -13.90487 -13.49854 -13.27876 -13.00784 -12.73828 -12.54622 -12.54380 -12.29641 -12.08554 -11.92559 -11.71862 -11.64476 -11.53908 -10.91327 -10.62724 -10.45373 -9.84967 -9.09351 -8.49792 -8.39583 -6.46216 0.25869 0.74748 1.32925 1.35074 1.47840 1.77850 1.82921 2.28482 2.32133 2.58233 2.95932 3.03147 3.80058 3.85244 3.93876 4.21110 4.23468 4.28192 4.35748 4.48795 4.58457 4.60756 4.73600 4.77992 4.83354 4.94386 4.94939 5.02893 5.06374 5.16243 5.24096 5.28612 5.42946 5.47804 5.61864 5.64038 5.75078 5.84028 5.91470 6.10779 6.29643 6.55258 6.79633 6.91361 7.17211 7.49535 8.75206 Molecular weight = 286.14amu Principal moments of inertia in cm(-1) A = 0.030887 B = 0.002952 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.318953 B = 9481.790649 C = 9646.010423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.010 3.990 3 H 0.055 0.945 4 C -0.119 4.119 5 C 0.498 3.502 6 O -0.590 6.590 7 N -0.710 5.710 8 C 0.231 3.769 9 C -0.546 4.546 10 H 0.059 0.941 11 C 0.025 3.975 12 N -0.932 5.932 13 Si 0.938 3.062 14 H -0.266 1.266 15 H -0.273 1.273 16 H -0.260 1.260 17 C -0.185 4.185 18 C 0.069 3.931 19 N -0.584 5.584 20 H 0.431 0.569 21 C 0.079 3.921 22 C -0.134 4.134 23 C -0.107 4.107 24 C -0.154 4.154 25 C -0.097 4.097 26 C -0.129 4.129 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.408 0.592 33 H 0.012 0.988 34 H 0.008 0.992 35 H 0.272 0.728 36 H 0.200 0.800 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.135 0.865 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.667 -4.816 27.940 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.010 4.010 3 H 0.074 0.926 4 C -0.158 4.158 5 C 0.286 3.714 6 O -0.472 6.472 7 N -0.359 5.359 8 C 0.107 3.893 9 C -0.584 4.584 10 H 0.077 0.923 11 C -0.175 4.175 12 N -0.571 5.571 13 Si 0.761 3.239 14 H -0.191 1.191 15 H -0.198 1.198 16 H -0.184 1.184 17 C -0.191 4.191 18 C -0.058 4.058 19 N -0.188 5.188 20 H 0.271 0.729 21 C -0.029 4.029 22 C -0.154 4.154 23 C -0.126 4.126 24 C -0.173 4.173 25 C -0.115 4.115 26 C -0.134 4.134 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.243 0.757 33 H 0.030 0.970 34 H 0.026 0.974 35 H 0.081 0.919 36 H 0.217 0.783 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.153 0.847 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.208 -4.242 27.843 28.190 hybrid contribution -0.076 0.149 -0.722 0.741 sum 1.132 -4.093 27.120 27.451 Atomic orbital electron populations 1.21878 0.94347 1.02195 1.01394 1.18965 0.95578 0.97556 0.88888 0.92636 1.21763 1.03727 1.00453 0.89878 1.21472 0.78656 0.85695 0.85543 1.90601 1.42440 1.26851 1.87327 1.46099 1.56485 1.27701 1.05643 1.19063 0.94798 0.91893 0.83496 1.21319 1.36685 1.09988 0.90360 0.92283 1.25612 0.96015 1.00591 0.95269 1.69987 1.47016 1.41280 0.98822 0.85855 0.79745 0.79938 0.78331 1.19132 1.19791 1.18426 1.20150 1.06043 0.94987 0.97966 1.21987 0.98998 0.96711 0.88105 1.41715 1.44126 1.12317 1.20647 0.72937 1.18488 0.99448 0.87836 0.97085 1.20365 0.99915 0.98903 0.96220 1.21149 0.99589 0.92084 0.99812 1.20905 1.00859 1.00558 0.94949 1.20482 0.97467 0.95385 0.98188 1.19434 1.02527 0.94662 0.96740 0.91269 0.93140 0.93312 0.87862 0.86193 0.75663 0.96972 0.97400 0.91878 0.78350 0.83857 0.83275 0.84671 0.86954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.81 71.98 0.63 -3.02 16 2 C 0.01 0.26 2.43 -11.54 -0.03 0.23 16 3 H 0.06 1.73 7.95 -2.39 -0.02 1.71 16 4 C -0.12 -2.99 5.02 29.85 0.15 -2.84 16 5 C 0.50 18.28 7.55 87.66 0.66 18.95 16 6 O -0.59 -26.20 13.97 -3.03 -0.04 -26.24 16 7 N -0.71 -28.36 5.55 -466.78 -2.59 -30.95 16 8 C 0.23 11.47 4.50 85.63 0.39 11.86 16 9 C -0.55 -30.37 9.83 25.60 0.25 -30.12 16 10 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 11 C 0.03 1.44 5.47 84.65 0.46 1.90 16 12 N -0.93 -56.05 13.96 21.45 0.30 -55.75 16 13 Si 0.94 44.56 27.47 68.60 1.88 46.45 16 14 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 17 C -0.18 -4.14 5.05 -18.63 -0.09 -4.24 16 18 C 0.07 1.10 11.26 83.00 0.93 2.04 16 19 N -0.58 -8.36 6.07 -187.60 -1.14 -9.50 16 20 H 0.43 3.11 8.96 -92.71 -0.83 2.28 16 21 C 0.08 1.55 7.28 39.03 0.28 1.84 16 22 C -0.13 -2.17 10.08 22.37 0.23 -1.94 16 23 C -0.11 -1.73 10.01 22.30 0.22 -1.50 16 24 C -0.15 -2.97 9.97 22.04 0.22 -2.75 16 25 C -0.10 -2.31 10.05 22.23 0.22 -2.09 16 26 C -0.13 -3.13 6.35 -20.20 -0.13 -3.26 16 27 H 0.07 1.42 8.02 -2.39 -0.02 1.40 16 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.05 1.58 5.95 -2.38 -0.01 1.57 16 30 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.12 2.28 8.13 -2.39 -0.02 2.26 16 32 H 0.41 14.20 8.32 -92.71 -0.77 13.43 16 33 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 34 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.20 1.85 8.06 -2.91 -0.02 1.83 16 37 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 40 H 0.11 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -73.41 336.25 2.22 -71.19 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.59 Total: 19.75 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 4.41 Total: -14.95 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -3.43 Total: -96.19 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.04 Total: -26.24 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.45 kcal Total: -73.41 2.22 -71.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427633220.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.407 kcal (2) G-P(sol) polarization free energy of solvation -73.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds